Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 2.0e-127 459.1 234 100.0
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 4.5e-124 448.0 234 97.9
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 2.9e-123 445.3 234 96.6
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 7.5e-111 404.1 233 88.8
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.6e-103 379.0 231 84.0
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.7e-102 376.3 231 83.1
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 5.4e-101 371.3 243 78.6
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.2e-71 273.9 240 64.2
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 8.4e-70 267.7 233 62.7
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 1.4e-69 266.9 220 63.6
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 1.0e-67 260.8 234 59.8
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 2.3e-67 259.6 237 60.8
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 1.1e-66 257.3 237 59.5
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.5e-66 256.9 237 60.3
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 2.8e-65 252.7 285 52.3
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 6.2e-65 251.5 234 60.3
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 1.4e-64 250.4 220 64.1
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 1.8e-64 250.0 206 64.1
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 5.3e-64 248.4 233 57.5
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 5.3e-64 248.4 225 58.7
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 5.3e-64 248.4 214 62.6
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 6.9e-64 248.1 203 61.6
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 9.0e-64 247.7 232 60.3
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 9.0e-64 247.7 265 55.5
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.5e-63 246.9 240 58.8
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.5e-63 246.9 217 61.3
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 3.4e-63 245.7 221 57.9
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 5.8e-63 245.0 225 58.2
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 1.9e-61 240.0 240 54.6
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.5e-61 239.6 224 58.5
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 2.5e-61 239.6 217 59.4
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 3.2e-61 239.2 242 58.3
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 5.5e-61 238.4 235 54.9
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 7.1e-61 238.0 230 55.2
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 2.1e-60 236.5 217 57.6
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 7.9e-60 234.6 221 56.6
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.0e-59 232.6 220 60.0
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 3.0e-59 232.6 230 58.7
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 3.9e-59 232.3 240 54.6
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.5e-58 230.3 217 57.6
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 3.3e-58 229.2 223 60.1
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 9.6e-58 227.6 231 56.7
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 9.6e-58 227.6 206 57.8
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 1.6e-57 226.9 214 55.1
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 4.8e-57 225.3 240 57.5
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 6.3e-57 224.9 235 57.0
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 1.8e-56 223.4 209 55.5
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 5.3e-56 221.9 235 51.1
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 6.9e-56 221.5 225 53.3
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 1.2e-55 220.7 233 53.6
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 1.5e-55 220.3 238 52.1
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 2.6e-55 219.5 200 55.5
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 3.4e-55 219.2 235 55.3
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 5.9e-55 218.4 221 55.7
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 5.9e-55 218.4 233 53.6
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 1.1e-53 214.2 218 53.2
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 1.1e-53 214.2 229 51.5
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.9e-53 213.4 226 51.3
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.2e-53 212.2 223 52.0
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.2e-53 212.2 223 52.0
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 4.2e-53 212.2 215 54.9
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 5.5e-53 211.8 226 51.8
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.5e-53 211.8 226 51.3
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.5e-53 211.8 226 51.3
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 9.3e-53 211.1 201 55.7
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 9.3e-53 211.1 200 54.0
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.3e-53 211.1 221 52.0
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 9.3e-53 211.1 214 56.1
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-52 210.3 201 55.7
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 6.1e-52 208.4 154 68.2
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 6.1e-52 208.4 236 52.1
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 7.9e-52 208.0 240 51.2
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.3e-51 207.2 176 60.2
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 2.3e-51 206.5 232 50.9
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 3.0e-51 206.1 233 51.9
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.7e-51 204.9 225 50.7
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 1.1e-50 204.1 200 62.0
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 1.1e-50 204.1 234 51.7
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 1.1e-50 204.1 237 49.4
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.5e-50 203.8 211 51.2
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 1.9e-50 203.4 244 50.0
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 5.7e-50 201.8 219 53.0
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 7.4e-50 201.4 236 50.0
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 9.7e-50 201.1 232 53.0
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 1.6e-49 200.3 234 51.7
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.7e-49 199.1 201 53.2
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 6.9e-48 194.9 226 48.7
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 3.4e-47 192.6 230 49.6
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 5.9e-47 191.8 213 54.0
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 2.2e-46 189.9 202 51.0
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 1.9e-45 186.8 226 47.3
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 4.2e-45 185.7 243 48.1
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 9.4e-45 184.5 238 46.6
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 6.1e-44 181.8 240 49.6
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 3.0e-43 179.5 234 48.3
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 8.8e-43 177.9 236 45.8
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.5e-42 177.2 209 54.1
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 2.0e-42 176.8 238 45.8
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 5.7e-42 175.3 224 46.4
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 2.8e-41 172.9 218 45.4
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 2.8e-41 172.9 121 70.2
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 1.1e-40 171.0 140 62.9
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 1.8e-40 170.2 232 46.6
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 4.1e-40 169.1 235 45.1
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 6.9e-40 168.3 185 56.2
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-39 167.5 202 49.0
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 3.4e-39 166.0 169 55.6
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 5.9e-39 165.2 232 46.6
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.3e-38 164.1 235 45.1
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 2.9e-38 162.9 238 43.3
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 5.0e-38 162.2 230 45.2
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.5e-38 161.8 173 49.7
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 8.5e-38 161.4 241 44.4
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 2.5e-37 159.8 227 44.5
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 5.5e-37 158.7 231 44.6
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 6.1e-36 155.2 235 44.7
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 7.9e-36 154.8 140 60.0
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 7.9e-36 154.8 168 47.0
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 7.9e-36 154.8 198 44.4
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 5.2e-35 152.1 222 45.0
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.8e-35 151.4 190 46.3
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 3.3e-34 149.4 238 39.1
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 2.2e-33 146.7 232 44.0
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 9.1e-32 141.4 243 39.1
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 3.5e-31 139.4 246 41.1
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 3.5e-31 139.4 107 61.7
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 6.5e-30 135.2 237 40.5
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.5e-29 134.0 99 73.7
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 2.5e-29 133.3 196 40.8
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 3.6e-28 129.4 179 43.0
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 5.2e-27 125.6 203 37.4
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 8.8e-27 124.8 226 42.0
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.2e-26 124.4 223 41.3
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 2.0e-26 123.6 156 48.1
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 3.7e-25 119.4 172 44.2
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.7e-25 119.4 80 67.5
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 8.2e-25 118.2 170 42.4
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.7e-18 95.5 137 42.3
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 7.0e-16 88.6 150 38.0
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 9.1e-16 88.2 155 37.4
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 5.9e-15 85.5 176 32.4
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.0e-14 82.4 93 45.2
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 5.5e-13 79.0 93 44.1
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 7.2e-13 78.6 159 34.0
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.8e-12 76.6 116 36.2
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-11 74.3 113 42.5
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.0e-11 73.2 55 72.7
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.0e-11 72.8 39 94.9
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.8e-11 72.0 113 41.6
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 1.5e-10 70.9 88 45.5
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.8e-09 66.6 98 42.9
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 3.7e-09 66.2 224 31.2
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-08 63.9 90 42.2
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 2.4e-08 63.5 105 38.1
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-07 61.2 90 40.0
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 8.6e-06 55.1 60 48.3


User provided reference genes

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