Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 3.2e-262 907.9 462 100.0
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 2.0e-240 835.5 465 91.8
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.8e-204 716.1 466 78.5
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 2.4e-201 705.7 458 79.0
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.7e-199 699.5 457 78.1
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 1.7e-191 672.9 462 78.4
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 2.4e-132 476.5 491 53.6
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 1.4e-129 467.2 495 54.5
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 6.0e-128 461.8 514 52.7
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 6.0e-128 461.8 479 55.1
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 2.8e-125 453.0 478 55.4
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.4e-124 449.9 474 53.0
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 4.9e-122 442.2 483 52.0
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 6.4e-122 441.8 475 52.4
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 1.9e-121 440.3 475 52.2
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 1.9e-121 440.3 491 54.2
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 1.9e-121 440.3 473 52.6
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 7.1e-121 438.3 476 52.5
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 6.0e-120 435.3 471 53.3
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 3.0e-119 433.0 475 50.9
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 3.9e-119 432.6 468 51.9
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 5.1e-119 432.2 479 51.1
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 7.4e-118 428.3 515 47.8
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 7.4e-118 428.3 473 50.5
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 1.3e-117 427.6 473 53.1
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 1.8e-116 423.7 422 56.2
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 5.3e-116 422.2 476 49.8
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 6.9e-116 421.8 512 48.6
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 2.0e-115 420.2 474 51.9
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.4e-115 419.5 485 49.5
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 7.6e-115 418.3 506 48.8
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 1.3e-114 417.5 505 47.1
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 1.7e-114 417.2 497 49.7
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 1.7e-114 417.2 502 48.0
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 2.9e-114 416.4 501 49.1
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 3.8e-114 416.0 479 50.3
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 4.9e-114 415.6 508 47.6
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 6.4e-114 415.2 471 49.5
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.1e-113 414.5 467 52.2
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.4e-113 414.1 465 51.8
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 3.2e-113 412.9 467 50.7
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 1.2e-112 411.0 473 49.9
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 2.1e-112 410.2 498 49.2
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 4.6e-112 409.1 467 51.8
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 4.6e-112 409.1 466 51.7
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 6.0e-112 408.7 486 48.8
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 1.3e-111 407.5 517 46.8
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.8e-111 407.1 482 49.6
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 3.0e-111 406.4 482 49.8
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 3.9e-111 406.0 468 49.8
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 6.7e-111 405.2 482 49.6
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 8.7e-111 404.8 463 49.0
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 8.7e-111 404.8 485 48.7
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 1.1e-110 404.4 479 49.5
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 1.9e-110 403.7 468 48.5
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 9.6e-110 401.4 510 45.5
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 2.1e-109 400.2 482 46.7
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 3.4e-107 392.9 472 47.5
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 3.4e-107 392.9 514 45.9
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 2.2e-106 390.2 473 46.9
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 1.9e-105 387.1 494 46.2
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 1.1e-102 377.9 481 45.7
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 9.6e-102 374.8 550 43.1
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 2.1e-101 373.6 423 48.2
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 6.3e-101 372.1 469 46.1
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 1.4e-100 370.9 464 48.7
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 1.4e-100 370.9 469 47.5
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 2.4e-100 370.2 467 48.2
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 9.0e-100 368.2 464 49.6
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 2.6e-99 366.7 463 49.2
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 3.4e-99 366.3 492 43.5
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 1.0e-98 364.8 481 47.2
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 1.7e-98 364.0 467 48.2
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 2.2e-98 363.6 462 47.6
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 8.5e-98 361.7 493 44.2
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 1.9e-97 360.5 463 46.9
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 9.3e-97 358.2 465 46.9
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 2.7e-96 356.7 464 46.3
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 1.8e-95 354.0 470 46.8
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 1.8e-95 354.0 457 47.3
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 2.3e-95 353.6 427 45.7
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 1.5e-94 350.9 462 45.9
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 4.3e-94 349.4 462 45.7
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 9.7e-94 348.2 224 79.5
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 6.5e-90 335.5 454 43.2
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 2.3e-87 327.0 456 44.1
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 4.8e-85 319.3 467 42.4
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 2.2e-82 310.5 412 48.3
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 4.7e-80 302.8 363 47.4
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 4.7e-80 302.8 391 46.5
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 1.5e-78 297.7 382 47.6
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 4.8e-77 292.7 418 42.3
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 2.9e-74 283.5 457 39.4
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.2e-69 267.3 349 46.4
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 2.0e-67 260.8 467 37.5
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 6.5e-66 255.8 205 61.5
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 9.8e-62 241.9 200 61.0
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 1.8e-60 237.7 339 42.8
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 1.6e-59 234.6 205 57.1
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 1.1e-57 228.4 515 33.8
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 4.2e-57 226.5 548 32.5
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.2e-46 191.8 298 41.6
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 5.7e-46 189.5 253 45.1
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 7.5e-46 189.1 123 73.2
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 2.9e-45 187.2 422 30.6
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 1.2e-43 181.8 496 28.6
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 5.9e-43 179.5 280 38.6
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.1e-41 175.3 123 69.1
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 8.0e-40 169.1 201 47.8
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 6.6e-34 149.4 171 43.9
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 1.5e-25 121.7 91 64.8
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 1.2e-24 118.6 73 75.3
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 5.2e-23 113.2 91 58.2
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 1.5e-17 95.1 162 40.7
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 3.4e-14 84.0 132 41.7
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 7.6e-14 82.8 48 79.2
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 8.4e-13 79.3 130 38.5
CAN.G473.140 Capsicum annuum HOM05D006388 ORTHO05D008026 2.1e-11 74.7 90 52.2
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 2.7e-11 74.3 54 66.7
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 3.0e-10 70.9 51 64.7
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 4.8e-08 63.5 90 46.7
Zm00001eb135490 Zea mays HOM05D006388 ORTHO05D008026 6.2e-08 63.2 61 55.7
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 7.6e-06 56.2 171 28.7


User provided reference genes

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