Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g029540 Solanum pennellii HOM05D008200 ORTHO05D010849 9.6e-126 453.4 207 100.0
Solyc03g020060.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 6.4e-122 440.7 207 96.1
PGSC0003DMG400015289 Solanum tuberosum HOM05D008200 ORTHO05D010849 4.3e-110 401.4 207 87.0
PGSC0003DMG400004548 Solanum tuberosum HOM05D008200 ORTHO05D010849 2.1e-109 399.1 207 87.9
CAN.G2197.1 Capsicum annuum HOM05D008200 ORTHO05D010849 1.2e-96 356.7 207 78.3
Solyc03g020050.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 2.1e-96 355.9 207 80.7
PGSC0003DMG400015290 Solanum tuberosum HOM05D008200 ORTHO05D010849 3.9e-95 351.7 207 78.3
Sopen03g029570 Solanum pennellii HOM05D008200 ORTHO05D010849 1.1e-92 343.6 189 81.5
Sopen03g029560 Solanum pennellii HOM05D008200 ORTHO05D010849 6.7e-87 324.3 147 99.3
Nitab4.5_0003324g0100 Nicotiana tabacum HOM05D008200 ORTHO05D010849 7.4e-86 320.9 202 72.8
Nitab4.5_0000363g0010 Nicotiana tabacum HOM05D008200 ORTHO05D010849 1.3e-85 320.1 202 73.3
Solyc03g020080.4 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.7e-82 309.7 147 94.6
Solyc03g020070.4 Solanum lycopersicum HOM05D008200 ORTHO05D010849 2.2e-82 309.3 147 93.9
CAN.G861.42 Capsicum annuum HOM05D008200 ORTHO05D010849 4.2e-81 305.1 204 69.1
CAN.G861.41 Capsicum annuum HOM05D008200 ORTHO05D010849 6.7e-79 297.7 228 61.4
PGSC0003DMG400015287 Solanum tuberosum HOM05D008200 ORTHO05D010849 9.7e-78 293.9 203 66.0
Solyc03g020040.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.3e-77 293.5 203 66.0
Solyc03g020030.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 8.2e-77 290.8 203 65.0
PGSC0003DMG400004547 Solanum tuberosum HOM05D008200 ORTHO05D010849 4.5e-75 285.0 148 84.5
Sopen03g029600 Solanum pennellii HOM05D008200 ORTHO05D010849 2.2e-74 282.7 170 70.6
PGSC0003DMG400039762 Solanum tuberosum HOM05D008200 ORTHO05D010849 4.2e-73 278.5 181 67.4
Sopen03g029530 Solanum pennellii HOM05D008200 ORTHO05D010849 5.3e-68 261.5 148 77.7
Nitab4.5_0014015g0010 Nicotiana tabacum HOM05D008200 ORTHO05D010849 2.7e-56 222.6 195 55.9
PGSC0003DMG400030593 Solanum tuberosum HOM05D008200 ORTHO05D010849 7.5e-54 214.5 148 66.2
CAN.G861.46 Capsicum annuum HOM05D008200 ORTHO05D010849 9.8e-54 214.2 244 47.1
Nitab4.5_0010009g0010 Nicotiana tabacum HOM05D008200 ORTHO05D010849 9.8e-54 214.2 181 53.6
CAN.G861.44 Capsicum annuum HOM05D008200 ORTHO05D010849 2.9e-50 202.6 203 51.7
Peaxi162Scf00391g00728 Petunia axillaris HOM05D008200 ORTHO05D010849 2.5e-49 199.5 228 48.7
Solyc11g020990.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 2.2e-45 186.4 225 45.3
Nitab4.5_0004437g0040 Nicotiana tabacum HOM05D008200 ORTHO05D010849 4.1e-44 182.2 219 40.6
Solyc11g021060.2 Solanum lycopersicum HOM05D008200 ORTHO05D010849 6.1e-40 168.3 215 41.4
Sopen11g011140 Solanum pennellii HOM05D008200 ORTHO05D010849 7.5e-38 161.4 140 56.4
Peaxi162Scf00391g00620 Petunia axillaris HOM05D008200 ORTHO05D010849 2.0e-35 153.3 215 41.9
Nitab4.5_0005255g0020 Nicotiana tabacum HOM05D008200 ORTHO05D010849 7.8e-35 151.4 129 55.0
Solyc03g098795.1 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.7e-34 150.2 152 50.7
Sopen03g029590 Solanum pennellii HOM05D008200 ORTHO05D010849 1.7e-34 150.2 141 54.6
PGSC0003DMG400009267 Solanum tuberosum HOM05D008200 ORTHO05D010849 2.4e-28 129.8 151 49.0
Solyc11g020960.2 Solanum lycopersicum HOM05D008200 ORTHO05D010849 3.2e-28 129.4 150 48.7
Sopen11g011150 Solanum pennellii HOM05D008200 ORTHO05D010849 2.3e-26 123.2 128 47.7
Sopen03g029580 Solanum pennellii HOM05D008200 ORTHO05D010849 1.2e-24 117.5 77 62.3
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 4.7e-24 115.5 132 42.4
PGSC0003DMG400009268 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.4e-15 87.4 126 43.7
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.8e-15 87.0 54 70.4
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 5.2e-15 85.5 54 68.5
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 5.2e-15 85.5 60 65.0
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 8.9e-15 84.7 56 67.9
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.0e-14 83.6 56 66.1
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 5.8e-14 82.0 55 65.5
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 1.3e-13 80.9 51 70.6
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 2.2e-13 80.1 53 64.2
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 3.8e-13 79.3 54 61.1
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 4.9e-13 79.0 51 68.6
Solyc11g021020.1 Solanum lycopersicum HOM05D008200 ORTHO05D010849 8.4e-13 78.2 81 43.2
Solyc06g065073.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 1.4e-12 77.4 56 60.7
Sopen06g023600 Solanum pennellii HOM05D008200 ORTHO05D010849 1.4e-12 77.4 56 60.7
PGSC0003DMG400031328 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.4e-12 77.4 56 60.7
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 2.4e-12 76.6 55 63.6
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 4.2e-12 75.9 56 57.1
Peaxi162Scf00268g00024 Petunia axillaris HOM05D008200 ORTHO05D007342 4.6e-11 72.4 56 57.1
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 4.6e-11 72.4 56 57.1
Nitab4.5_0006133g0030 Nicotiana tabacum HOM05D008200 ORTHO05D007342 6.6e-10 68.6 51 58.8
Solyc06g061210.4 Solanum lycopersicum HOM05D001063 ORTHO05D000986 1.1e-09 67.8 41 73.2
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 5.6e-09 65.5 161 31.1
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 7.3e-09 65.1 56 51.8
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 4.7e-08 62.4 51 56.9
Solyc07g054720.2 Solanum lycopersicum HOM05D008200 ORTHO05D007342 1.8e-07 60.5 60 48.3
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 3.1e-07 59.7 55 52.7
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 4.0e-07 59.3 63 49.2
PGSC0003DMG400018328 Solanum tuberosum HOM05D008200 ORTHO05D007342 4.0e-07 59.3 52 51.9
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 5.3e-07 58.9 55 50.9
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 9.0e-07 58.2 55 52.7
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 1.2e-06 57.8 64 48.4
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 1.2e-06 57.8 57 50.9
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 1.2e-06 57.8 55 52.7
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 2.0e-06 57.0 50 54.0
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 2.0e-06 57.0 51 58.8
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 2.0e-06 57.0 52 50.0
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 2.0e-06 57.0 51 54.9
Sopen07g028650 Solanum pennellii HOM05D008200 ORTHO05D010849 2.0e-06 57.0 52 50.0
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 4.4e-06 55.8 64 46.9
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 7.6e-06 55.1 54 55.6
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 7.6e-06 55.1 53 54.7
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 9.9e-06 54.7 53 52.8
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 9.9e-06 54.7 53 52.8
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 9.9e-06 54.7 53 56.6
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 9.9e-06 54.7 53 56.6
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 9.9e-06 54.7 52 48.1


User provided reference genes

Program Settings