Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g029430 Solanum pennellii HOM05D025152 ORTHO05D011982 1.1e-133 479.9 232 100.0
Solyc03g098720.3 Solanum lycopersicum HOM05D025152 ORTHO05D011982 9.4e-114 413.7 214 93.9
PGSC0003DMG400010170 Solanum tuberosum HOM05D000535 ORTHO05D011982 4.9e-62 241.9 223 64.1
CAN.G929.8 Capsicum annuum HOM05D000535 ORTHO05D011982 9.0e-56 221.1 225 56.4
PGSC0003DMG400010148 Solanum tuberosum HOM05D025152 ORTHO05D011982 6.0e-52 208.4 225 52.9
Solyc03g098680.3 Solanum lycopersicum HOM05D025152 ORTHO05D011982 3.3e-50 202.6 230 51.3
Sopen03g029400 Solanum pennellii HOM05D025152 ORTHO05D011982 1.6e-49 200.3 230 50.9
Nitab4.5_0001495g0130 Nicotiana tabacum HOM05D000535 ORTHO05D011982 8.4e-38 161.4 224 44.2
Nitab4.5_0004423g0010 Nicotiana tabacum HOM05D000535 ORTHO05D011982 1.6e-36 157.1 224 44.2
CAN.G929.7 Capsicum annuum HOM05D000535 ORTHO05D011982 9.0e-32 141.4 213 44.1
Nitab4.5_0000425g0210 Nicotiana tabacum HOM05D000535 ORTHO05D011982 3.4e-31 139.4 218 41.7
Nitab4.5_0000425g0230 Nicotiana tabacum HOM05D000535 ORTHO05D011982 7.6e-31 138.3 218 41.7
Nitab4.5_0001486g0010 Nicotiana tabacum HOM05D000535 ORTHO05D011982 2.9e-30 136.3 220 42.3
PGSC0003DMG400008546 Solanum tuberosum HOM05D000535 ORTHO05D011982 2.8e-25 119.8 218 37.6
DCAR_011686 Daucus carota HOM05D000535 ORTHO05D000427 1.4e-19 100.9 215 33.0
CAN.G765.30 Capsicum annuum HOM05D000535 ORTHO05D011982 1.8e-19 100.5 215 36.3
CAN.G765.29 Capsicum annuum HOM05D000535 ORTHO05D011982 2.3e-19 100.1 216 34.7
CAN.G765.33 Capsicum annuum HOM05D000535 ORTHO05D011982 1.9e-18 97.1 216 35.2
HanXRQChr05g0161361 Helianthus annuus HOM05D000535 ORTHO05D000427 1.7e-17 94.0 224 29.9
DCAR_011412 Daucus carota HOM05D000535 ORTHO05D000427 6.3e-17 92.0 184 33.7
DCAR_011414 Daucus carota HOM05D000535 ORTHO05D000427 1.4e-16 90.9 216 29.6
ECA238G3099 Erigeron canadensis HOM05D000535 ORTHO05D000427 6.9e-16 88.6 172 33.7
Atru.chr6.1195 Acer truncatum HOM05D000535 ORTHO05D000427 2.0e-15 87.0 213 31.0
Atru.chr6.1198 Acer truncatum HOM05D000535 ORTHO05D000427 2.6e-15 86.7 213 30.5
Lsat_1_v5_gn_2_112140 Lactuca sativa HOM05D000535 ORTHO05D000427 4.5e-15 85.9 181 32.0
Cc00_g19300 Coffea canephora HOM05D000535 ORTHO05D000427 7.7e-15 85.1 219 30.6
Cc00_g28720 Coffea canephora HOM05D000535 ORTHO05D000427 7.7e-15 85.1 217 30.9
HanXRQChr16g0506311 Helianthus annuus HOM05D000535 ORTHO05D000427 1.0e-14 84.7 203 32.0
HanXRQChr16g0506331 Helianthus annuus HOM05D000535 ORTHO05D000427 1.0e-14 84.7 203 32.0
GSVIVG01012920001 Vitis vinifera HOM05D000535 ORTHO05D000427 1.0e-14 84.7 217 30.9
Cc00_g23760 Coffea canephora HOM05D000535 ORTHO05D000427 1.7e-14 84.0 195 29.7
Cc04_g08350 Coffea canephora HOM05D000535 ORTHO05D000427 1.7e-14 84.0 200 31.0
Cc00_g28730 Coffea canephora HOM05D000535 ORTHO05D000427 2.2e-14 83.6 195 29.2
Cc00_g34040 Coffea canephora HOM05D000535 ORTHO05D000427 3.8e-14 82.8 195 29.2
Cc00_g28690 Coffea canephora HOM05D000535 ORTHO05D000427 5.0e-14 82.4 195 29.2
Potri.004G067900 Populus trichocarpa HOM05D000535 ORTHO05D000427 6.5e-14 82.0 203 29.1
Cc04_g08380 Coffea canephora HOM05D000535 ORTHO05D000427 8.5e-14 81.6 198 29.3
Cc04_g08360 Coffea canephora HOM05D000535 ORTHO05D000427 1.1e-13 81.3 211 28.0
Dinv04609 Davidia involucrata HOM05D000535 ORTHO05D000427 1.1e-13 81.3 211 29.4
Hma1.2p1_0460F.1_g157635 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 1.4e-13 80.9 176 33.5
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 3.2e-13 79.7 202 30.2
Actinidia26771 Actinidia chinensis HOM05D000535 ORTHO05D000427 4.2e-13 79.3 187 31.0
CAN.G765.31 Capsicum annuum HOM05D000002 ORTHO05D000001 4.2e-13 79.3 201 33.3
Hma1.2p1_0807F.1_g221410 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 4.2e-13 79.3 187 33.7
SGA_v2.0_scaffold25G10739 Striga asiatica HOM05D000535 ORTHO05D000427 5.5e-13 79.0 213 28.2
CSS0015346 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 7.2e-13 78.6 213 29.6
Hma1.2p1_0807F.1_g221390 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 7.2e-13 78.6 186 31.2
PGSC0003DMG400008536 Solanum tuberosum HOM05D000535 ORTHO05D011982 7.2e-13 78.6 197 34.0
arahy.Tifrunner.gnm1.ann1.M82AL9 Arachis hypogaea HOM05D000535 ORTHO05D000427 9.4e-13 78.2 204 31.4
Atru.chr10.1154 Acer truncatum HOM05D000535 ORTHO05D000427 1.2e-12 77.8 215 28.8
BolC2t09133H Brassica oleracea HOM05D000535 ORTHO05D000427 1.2e-12 77.8 189 31.2
Aa31LG4G3600 Aethionema arabicum HOM05D000535 ORTHO05D000427 1.6e-12 77.4 193 28.5
CSS0016167 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 1.6e-12 77.4 218 28.9
Lj9C411T7 Lonicera japonica HOM05D000535 ORTHO05D000427 1.6e-12 77.4 202 29.7
A02p18600 Brassica napus HOM05D000535 ORTHO05D000427 2.1e-12 77.0 187 31.6
Ciclev10022211m.g Citrus clementina HOM05D000535 ORTHO05D000427 2.1e-12 77.0 205 28.8
Nitab4.5_0000477g0200 Nicotiana tabacum HOM05D000535 ORTHO05D000427 2.1e-12 77.0 186 32.8
THA.LOC104814040 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 2.1e-12 77.0 201 30.8
AL2G33090 Arabidopsis lyrata HOM05D000535 ORTHO05D000427 2.7e-12 76.6 202 29.7
AUR62028778 Chenopodium quinoa HOM05D000535 ORTHO05D000427 2.7e-12 76.6 173 28.3
THA.LOC104813935 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 2.7e-12 76.6 201 29.9
Dinv12307 Davidia involucrata HOM05D000535 ORTHO05D000006 4.7e-12 75.9 206 29.6
Ah.03g135120 Amaranthus hybridus HOM05D000535 ORTHO05D000427 6.1e-12 75.5 213 27.7
BraA02t06900Z Brassica rapa HOM05D000535 ORTHO05D000427 6.1e-12 75.5 187 31.6
PSO170G2432 Papaver somniferum HOM05D000535 ORTHO05D000427 6.1e-12 75.5 174 31.6
Rhsim08G0010100 Rhododendron simsii HOM05D000535 ORTHO05D000427 6.1e-12 75.5 210 30.0
Lsat_1_v5_gn_2_112040 Lactuca sativa HOM05D000535 ORTHO05D000427 7.9e-12 75.1 220 30.5
CSS0047130 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 1.0e-11 74.7 217 29.0
vmacro18605 Vaccinium macrocarpon HOM05D000535 ORTHO05D000427 1.0e-11 74.7 206 29.6
DCAR_011411 Daucus carota HOM05D000535 ORTHO05D000427 1.4e-11 74.3 198 27.8
Dinv10710 Davidia involucrata HOM05D000535 ORTHO05D000427 1.4e-11 74.3 185 31.4
Glyma.08G341500 Glycine max HOM05D010343 ORTHO05D011300 1.4e-11 74.3 218 28.9
Peaxi162Scf00643g00055 Petunia axillaris HOM05D000535 ORTHO05D000427 1.4e-11 74.3 220 28.2
BcaB03g15701 Brassica carinata HOM05D000535 ORTHO05D000427 1.8e-11 73.9 179 30.2
Peaxi162Scf00643g00538 Petunia axillaris HOM05D000535 ORTHO05D000427 1.8e-11 73.9 206 30.6
Nitab4.5_0002771g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 2.3e-11 73.6 182 30.2
BcaC08g45655 Brassica carinata HOM05D000535 ORTHO05D000427 3.0e-11 73.2 179 30.2
Ciclev10022129m.g Citrus clementina HOM05D000535 ORTHO05D000427 3.0e-11 73.2 203 25.6
Sp5g28260 Schrenkiella parvula HOM05D000535 ORTHO05D009010 3.0e-11 73.2 209 27.8
Aa31LG4G3540 Aethionema arabicum HOM05D000535 ORTHO05D000427 3.9e-11 72.8 188 29.8
Duzib205G1520 Durio zibethinus HOM05D000535 ORTHO05D000427 3.9e-11 72.8 184 32.1
Hma1.2p1_0807F.1_g221420 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 3.9e-11 72.8 186 31.2
Hma1.2p1_0989F.1_g244860 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 3.9e-11 72.8 212 30.7
Dinv10702 Davidia involucrata HOM05D000535 ORTHO05D000427 8.8e-11 71.6 207 29.5
PSO017G0167 Papaver somniferum HOM05D000535 ORTHO05D000427 8.8e-11 71.6 162 30.2
Hma1.2p1_0989F.1_g244870 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 1.5e-10 70.9 215 30.2
Gohir.D09G052700 Gossypium hirsutum HOM05D000535 ORTHO05D000427 2.0e-10 70.5 185 29.7
BcaC08g45656 Brassica carinata HOM05D000535 ORTHO05D000427 2.6e-10 70.1 179 29.6
C06p34120 Brassica napus HOM05D000535 ORTHO05D000427 2.6e-10 70.1 179 29.6
Dinv04608 Davidia involucrata HOM05D000535 ORTHO05D000427 3.3e-10 69.7 156 29.5
Thecc.03G051800 Theobroma cacao HOM05D000535 ORTHO05D000427 3.3e-10 69.7 174 32.2
Glyma.08G341400 Glycine max HOM05D000535 ORTHO05D011300 4.4e-10 69.3 167 26.3
EL10Ac6g13199 Beta vulgaris HOM05D000535 ORTHO05D000427 5.7e-10 68.9 207 26.6
PGSC0003DMG400027054 Solanum tuberosum HOM05D000535 ORTHO05D000427 5.7e-10 68.9 202 28.7
Aa31LG4G3570 Aethionema arabicum HOM05D000535 ORTHO05D000427 7.4e-10 68.6 242 26.9
AUR62005428 Chenopodium quinoa HOM05D000535 ORTHO05D000427 9.7e-10 68.2 147 33.3
Gohir.D10G223900 Gossypium hirsutum HOM05D000535 ORTHO05D000427 9.7e-10 68.2 212 28.3
THA.LOC104814041 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 9.7e-10 68.2 176 27.3
Dinv08278 Davidia involucrata HOM05D000535 ORTHO05D000427 1.3e-09 67.8 172 28.5
Dinv10703 Davidia involucrata HOM05D000535 ORTHO05D000427 1.3e-09 67.8 202 27.2
Dinv10707 Davidia involucrata HOM05D000535 ORTHO05D000427 1.3e-09 67.8 202 27.2
HanXRQChr06g0165011 Helianthus annuus HOM05D000535 ORTHO05D000427 1.3e-09 67.8 181 34.3
PSO017G1606 Papaver somniferum HOM05D000535 ORTHO05D000427 1.3e-09 67.8 175 29.1
SalBow5G3406 Salvia bowleyana HOM05D000535 ORTHO05D000427 1.3e-09 67.8 184 27.2
DCAR_011421 Daucus carota HOM05D000535 ORTHO05D000427 1.7e-09 67.4 182 29.1
HanXRQChr16g0506341 Helianthus annuus HOM05D000535 ORTHO05D000427 1.7e-09 67.4 183 30.6
Hma1.2p1_0135F.1_g061615 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 1.7e-09 67.4 185 30.8
Hma1.2p1_0135F.1_g061660 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 1.7e-09 67.4 185 30.8
Hma1.2p1_1624F.1_g294266 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 1.7e-09 67.4 185 30.8
BraA07t30625Z Brassica rapa HOM05D000535 ORTHO05D000427 2.2e-09 67.0 180 31.1
CAN.G1954.2 Capsicum annuum HOM05D000535 ORTHO05D011982 2.2e-09 67.0 108 42.6
Gohir.A09G051800 Gossypium hirsutum HOM05D000535 ORTHO05D000427 2.2e-09 67.0 185 28.6
A07p29870 Brassica napus HOM05D000535 ORTHO05D000427 2.8e-09 66.6 180 31.1
COL.COLO4_29947 Corchorus olitorius HOM05D000535 ORTHO05D000427 2.8e-09 66.6 184 28.8
Gorai.011G254900 Gossypium raimondii HOM05D000535 ORTHO05D000427 3.7e-09 66.2 211 28.9
Nitab4.5_0000477g0210 Nicotiana tabacum HOM05D000535 ORTHO05D000427 3.7e-09 66.2 185 29.7
PSO017G6542 Papaver somniferum HOM05D000535 ORTHO05D000427 3.7e-09 66.2 187 29.9
BolC6t38525H Brassica oleracea HOM05D000535 ORTHO05D000427 4.8e-09 65.9 180 31.1
Lj2g0000790 Lotus japonicus HOM05D000535 ORTHO05D000427 4.8e-09 65.9 204 26.0
Lj2g0002029 Lotus japonicus HOM05D000535 ORTHO05D000427 4.8e-09 65.9 204 26.0
Aa31LG4G3550 Aethionema arabicum HOM05D000535 ORTHO05D000427 6.3e-09 65.5 191 27.2
Nn3g18573 Nelumbo nucifera HOM05D000535 ORTHO05D000427 6.3e-09 65.5 210 29.0
Sp5g28240 Schrenkiella parvula HOM05D000535 ORTHO05D000427 6.3e-09 65.5 187 27.3
THA.LOC104811423 Tarenaya hassleriana HOM05D000535 ORTHO05D000427 6.3e-09 65.5 185 29.7
Nitab4.5_0000339g0140 Nicotiana tabacum HOM05D000535 ORTHO05D000427 8.2e-09 65.1 219 26.0
BcaC08g45653 Brassica carinata HOM05D000535 ORTHO05D000427 1.1e-08 64.7 180 32.2
C06p34110 Brassica napus HOM05D000535 ORTHO05D000427 1.1e-08 64.7 180 32.2
CAN.G65.70 Capsicum annuum HOM05D000535 ORTHO05D000427 1.1e-08 64.7 201 26.4
TAR629G0176 Trochodendron aralioides HOM05D000535 ORTHO05D000427 1.1e-08 64.7 184 28.8
Ah.02g129700 Amaranthus hybridus HOM05D000535 ORTHO05D000427 1.4e-08 64.3 187 27.3
A09p37590 Brassica napus HOM05D007344 ORTHO05D009010 1.8e-08 63.9 152 29.6
AUR62028777 Chenopodium quinoa HOM05D000535 ORTHO05D000427 1.8e-08 63.9 186 28.0
Dinv10705 Davidia involucrata HOM05D000535 ORTHO05D000427 1.8e-08 63.9 140 31.4
PSO170G4576 Papaver somniferum HOM05D000535 ORTHO05D000427 1.8e-08 63.9 175 28.0
BcaC05g26866 Brassica carinata HOM05D007344 ORTHO05D009010 2.4e-08 63.5 175 28.0
Ah.03g132920 Amaranthus hybridus HOM05D000535 ORTHO05D000427 3.1e-08 63.2 150 30.7
Dinv10701 Davidia involucrata HOM05D000535 ORTHO05D000427 3.1e-08 63.2 205 27.3
Nitab4.5_0000339g0150 Nicotiana tabacum HOM05D000535 ORTHO05D000427 3.1e-08 63.2 207 27.1
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 4.1e-08 62.8 171 28.1
BcaB03g15038 Brassica carinata HOM05D000535 ORTHO05D000427 4.1e-08 62.8 177 31.6
BraA09t39269Z Brassica rapa HOM05D007344 ORTHO05D009010 4.1e-08 62.8 152 28.9
BcaB03g15702 Brassica carinata HOM05D000535 ORTHO05D000427 5.3e-08 62.4 180 31.1
C06p47400 Brassica napus HOM05D000535 ORTHO05D000427 5.3e-08 62.4 180 31.1
Hma1.2p1_0816F.1_g222920 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 5.3e-08 62.4 183 29.0
Ah.03g135110 Amaranthus hybridus HOM05D000535 ORTHO05D000427 9.1e-08 61.6 221 28.5
Lj5P167T32 Lonicera japonica HOM05D000535 ORTHO05D000427 9.1e-08 61.6 184 28.3
Lj2g0003621 Lotus japonicus HOM05D000535 ORTHO05D000427 1.2e-07 61.2 174 29.3
AL2G33060 Arabidopsis lyrata HOM05D000535 ORTHO05D000427 1.5e-07 60.8 183 27.3
A07p39210 Brassica napus HOM05D000535 ORTHO05D000427 1.5e-07 60.8 180 31.1
BraA07t31470Z Brassica rapa HOM05D000535 ORTHO05D000427 1.5e-07 60.8 180 31.1
Carub.0002s2005 Capsella rubella HOM05D000535 ORTHO05D000427 2.0e-07 60.5 183 27.9
Lsat_1_v5_gn_2_111441 Lactuca sativa HOM05D000535 ORTHO05D000427 2.0e-07 60.5 207 27.1
Sc14g0008170 Simmondsia chinensis HOM05D000535 ORTHO05D000427 2.0e-07 60.5 188 26.6
Thhalv10019129m.g Eutrema salsugineum HOM05D000535 ORTHO05D000427 2.6e-07 60.1 178 26.4
AT1G73260 Arabidopsis thaliana HOM05D000535 ORTHO05D000427 3.4e-07 59.7 183 27.3
BcaB03g15704 Brassica carinata HOM05D000535 ORTHO05D000427 3.4e-07 59.7 180 31.1
Thhalv10019151m.g Eutrema salsugineum HOM05D000535 ORTHO05D000427 3.4e-07 59.7 180 30.0
HanXRQChr06g0164731 Helianthus annuus HOM05D000535 ORTHO05D000427 4.5e-07 59.3 184 31.0
Thecc.02G055600 Theobroma cacao HOM05D000535 ORTHO05D000427 4.5e-07 59.3 148 32.4
CARHR066270 Cardamine hirsuta HOM05D000535 ORTHO05D000427 5.9e-07 58.9 182 27.5
Ciclev10023287m.g Citrus clementina HOM05D000535 ORTHO05D000427 5.9e-07 58.9 144 26.4
Ciclev10024002m.g Citrus clementina HOM05D000535 ORTHO05D000427 5.9e-07 58.9 212 29.2
DCAR_026808 Daucus carota HOM05D000535 ORTHO05D000427 5.9e-07 58.9 196 26.0
HanXRQChr16g0527271 Helianthus annuus HOM05D000535 ORTHO05D000427 5.9e-07 58.9 180 26.1
AUR62014089 Chenopodium quinoa HOM05D000535 ORTHO05D000427 7.7e-07 58.5 160 30.0
Glyma.01G095000 Glycine max HOM05D000535 ORTHO05D011300 7.7e-07 58.5 208 26.4
Glyma.08G342000 Glycine max HOM05D000535 ORTHO05D011300 7.7e-07 58.5 220 30.5
Sabra19G0101900 Salix brachista HOM05D003420 ORTHO05D003970 7.7e-07 58.5 202 29.2
Ah.03g132930 Amaranthus hybridus HOM05D000535 ORTHO05D000427 1.0e-06 58.2 184 29.3
CARHR066280 Cardamine hirsuta HOM05D000535 ORTHO05D000427 1.0e-06 58.2 170 26.5
PGSC0003DMG400029534 Solanum tuberosum HOM05D000535 ORTHO05D000427 1.0e-06 58.2 177 26.6
Sabra19G0098500 Salix brachista HOM05D000535 ORTHO05D050455 1.7e-06 57.4 202 28.7
Thecc.02G055700 Theobroma cacao HOM05D000535 ORTHO05D000427 1.7e-06 57.4 150 31.3
ECA234G1726 Erigeron canadensis HOM05D000535 ORTHO05D000427 2.2e-06 57.0 187 26.7
LjContig00385g0003813 Lotus japonicus HOM05D000535 ORTHO05D000427 2.9e-06 56.6 203 24.6
Dinv10709 Davidia involucrata HOM05D000535 ORTHO05D000427 5.0e-06 55.8 179 29.1
Dinv10704 Davidia involucrata HOM05D000535 ORTHO05D000427 6.5e-06 55.5 134 27.6
Peaxi162Scf00171g00131 Petunia axillaris HOM05D000535 ORTHO05D000427 6.5e-06 55.5 193 24.4


User provided reference genes

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