Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g029400 Solanum pennellii HOM05D025152 ORTHO05D011982 6.3e-131 470.7 227 100.0
Solyc03g098680.3 Solanum lycopersicum HOM05D025152 ORTHO05D011982 3.2e-122 441.8 227 95.2
PGSC0003DMG400010148 Solanum tuberosum HOM05D025152 ORTHO05D011982 4.3e-111 404.8 228 88.2
CAN.G929.8 Capsicum annuum HOM05D000535 ORTHO05D011982 2.5e-55 219.5 229 53.7
PGSC0003DMG400010170 Solanum tuberosum HOM05D000535 ORTHO05D011982 4.3e-55 218.8 225 54.2
Sopen03g029430 Solanum pennellii HOM05D025152 ORTHO05D011982 6.1e-49 198.4 230 50.9
Solyc03g098720.3 Solanum lycopersicum HOM05D025152 ORTHO05D011982 1.5e-44 183.7 230 48.7
Nitab4.5_0001495g0130 Nicotiana tabacum HOM05D000535 ORTHO05D011982 2.6e-39 166.4 224 49.1
Nitab4.5_0004423g0010 Nicotiana tabacum HOM05D000535 ORTHO05D011982 3.7e-38 162.5 233 49.4
Nitab4.5_0000425g0210 Nicotiana tabacum HOM05D000535 ORTHO05D011982 3.8e-27 125.9 225 40.0
Nitab4.5_0001486g0010 Nicotiana tabacum HOM05D000535 ORTHO05D011982 5.0e-27 125.6 229 38.9
Nitab4.5_0000425g0230 Nicotiana tabacum HOM05D000535 ORTHO05D011982 1.5e-26 124.0 227 37.4
PGSC0003DMG400008546 Solanum tuberosum HOM05D000535 ORTHO05D011982 3.7e-22 109.4 227 37.4
CAN.G929.7 Capsicum annuum HOM05D000535 ORTHO05D011982 7.0e-21 105.1 219 36.1
CAN.G765.33 Capsicum annuum HOM05D000535 ORTHO05D011982 7.7e-20 101.7 235 34.0
CAN.G765.31 Capsicum annuum HOM05D000002 ORTHO05D000001 8.6e-19 98.2 205 35.1
CAN.G765.34 Capsicum annuum HOM05D000535 ORTHO05D011982 1.9e-18 97.1 233 36.5
CAN.G765.29 Capsicum annuum HOM05D000535 ORTHO05D011982 2.8e-17 93.2 227 33.5
PGSC0003DMG400008536 Solanum tuberosum HOM05D000535 ORTHO05D011982 2.3e-16 90.1 181 34.3
Ciclev10023465m.g Citrus clementina HOM05D000535 ORTHO05D000427 5.2e-16 89.0 224 32.6
Ciclev10022276m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.2e-15 87.8 224 32.6
Ciclev10023257m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.2e-15 87.8 224 33.0
Ciclev10023320m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.2e-15 87.8 224 33.0
Ciclev10023572m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.2e-15 87.8 224 33.0
Ciclev10022282m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.5e-15 87.4 224 33.0
CAN.G1156.34 Capsicum annuum HOM05D000535 ORTHO05D011982 2.0e-15 87.0 229 31.9
Ciclev10021858m.g Citrus clementina HOM05D000535 ORTHO05D000427 2.6e-15 86.7 224 31.7
Nitab4.5_0000477g0200 Nicotiana tabacum HOM05D000535 ORTHO05D000427 3.4e-15 86.3 168 36.9
Cc00_g31050 Coffea canephora HOM05D000535 ORTHO05D000427 4.4e-15 85.9 228 33.8
Ciclev10022284m.g Citrus clementina HOM05D000535 ORTHO05D000427 5.7e-15 85.5 212 32.5
Cc00_g04330 Coffea canephora HOM05D000535 ORTHO05D000427 5.7e-15 85.5 229 32.8
Cc00_g30520 Coffea canephora HOM05D000535 ORTHO05D000427 5.7e-15 85.5 229 33.2
Sabra04G0045700 Salix brachista HOM05D000535 ORTHO05D000427 7.5e-15 85.1 208 31.2
Potri.004G067900 Populus trichocarpa HOM05D000535 ORTHO05D000427 9.8e-15 84.7 188 30.9
CAN.G765.30 Capsicum annuum HOM05D000535 ORTHO05D011982 2.2e-14 83.6 228 32.5
Ciclev10023371m.g Citrus clementina HOM05D000535 ORTHO05D000427 4.9e-14 82.4 224 31.7
Cc10_g11700 Coffea canephora HOM05D000535 ORTHO05D000427 4.9e-14 82.4 227 32.2
Cc10_g11720 Coffea canephora HOM05D000535 ORTHO05D000427 4.9e-14 82.4 226 31.4
DCAR_011412 Daucus carota HOM05D000535 ORTHO05D000427 6.4e-14 82.0 194 32.0
PGSC0003DMG400046234 Solanum tuberosum HOM05D000535 ORTHO05D011982 6.4e-14 82.0 164 35.4
Nitab4.5_0002771g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 8.3e-14 81.6 175 34.3
Actinidia26771 Actinidia chinensis HOM05D000535 ORTHO05D000427 1.1e-13 81.3 207 32.4
ECA238G3099 Erigeron canadensis HOM05D000535 ORTHO05D000427 1.1e-13 81.3 156 35.3
Ah.03g132920 Amaranthus hybridus HOM05D000535 ORTHO05D000427 2.4e-13 80.1 165 37.0
Glyma.16G212500 Glycine max HOM05D000535 ORTHO05D000427 2.4e-13 80.1 189 33.3
TPR.G27457 Trifolium pratense HOM05D000535 ORTHO05D000427 3.2e-13 79.7 194 32.5
VMungo0464G1147 Vigna mungo HOM05D000535 ORTHO05D000427 3.2e-13 79.7 193 34.2
ECA238G4632 Erigeron canadensis HOM05D000535 ORTHO05D000427 4.1e-13 79.3 195 32.8
Medtr6g078100 Medicago truncatula HOM05D000535 ORTHO05D000427 4.1e-13 79.3 193 31.6
Oeu057516.1 Olea europaea HOM05D000535 ORTHO05D000427 4.1e-13 79.3 198 31.3
AUR62005785 Chenopodium quinoa HOM05D000535 ORTHO05D000427 9.2e-13 78.2 157 33.1
Psat1g122280 Pisum sativum HOM05D000535 ORTHO05D000427 9.2e-13 78.2 214 30.4
Hma1.2p1_0060F.1_g032810 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 1.2e-12 77.8 166 34.9
Thecc.05G198000 Theobroma cacao HOM05D000535 ORTHO05D000427 1.2e-12 77.8 195 30.8
Psat1g122080 Pisum sativum HOM05D000535 ORTHO05D000427 1.6e-12 77.4 216 31.5
HanXRQChr05g0161361 Helianthus annuus HOM05D000535 ORTHO05D000427 2.0e-12 77.0 194 30.9
Hma1.2p1_0135F.1_g061615 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 2.0e-12 77.0 156 34.6
Hma1.2p1_0135F.1_g061660 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 2.0e-12 77.0 156 34.6
Hma1.2p1_1624F.1_g294266 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 2.0e-12 77.0 156 34.6
COL.COLO4_08721 Corchorus olitorius HOM05D000535 ORTHO05D000427 2.7e-12 76.6 184 32.1
Peaxi162Scf00643g00538 Petunia axillaris HOM05D000535 ORTHO05D000427 2.7e-12 76.6 193 31.6
AUR62028776 Chenopodium quinoa HOM05D000535 ORTHO05D000427 3.5e-12 76.3 197 29.4
Lj9C411T7 Lonicera japonica HOM05D000535 ORTHO05D000427 3.5e-12 76.3 214 33.6
Dinv04608 Davidia involucrata HOM05D000535 ORTHO05D000427 5.9e-12 75.5 167 32.3
SGA_v2.0_scaffold25G10739 Striga asiatica HOM05D000535 ORTHO05D000427 5.9e-12 75.5 226 29.6
Lj5P167T32 Lonicera japonica HOM05D000535 ORTHO05D000427 7.8e-12 75.1 199 32.2
Peaxi162Scf00643g00055 Petunia axillaris HOM05D000535 ORTHO05D000427 7.8e-12 75.1 230 30.4
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 7.8e-12 75.1 200 29.5
Duzib205G0258 Durio zibethinus HOM05D000535 ORTHO05D000427 1.0e-11 74.7 225 28.4
Medtr6g078070 Medicago truncatula HOM05D000535 ORTHO05D000427 1.0e-11 74.7 194 33.0
Rhsim08G0010100 Rhododendron simsii HOM05D000535 ORTHO05D000427 1.0e-11 74.7 218 30.3
TPR.G27452 Trifolium pratense HOM05D000535 ORTHO05D000427 1.0e-11 74.7 218 31.2
Ah.03g135120 Amaranthus hybridus HOM05D000535 ORTHO05D000427 1.3e-11 74.3 216 27.8
Gohir.A05G392100 Gossypium hirsutum HOM05D000535 ORTHO05D000427 1.7e-11 73.9 167 34.7
Gohir.D04G025000 Gossypium hirsutum HOM05D000535 ORTHO05D000427 1.7e-11 73.9 167 34.7
Gorai.012G027600 Gossypium raimondii HOM05D000535 ORTHO05D000427 1.7e-11 73.9 167 34.7
Sabra17G0126000 Salix brachista HOM05D000535 ORTHO05D000427 1.7e-11 73.9 204 31.4
Cc00_g19300 Coffea canephora HOM05D000535 ORTHO05D000427 2.3e-11 73.6 220 29.1
Cc00_g23760 Coffea canephora HOM05D000535 ORTHO05D000427 2.3e-11 73.6 211 31.3
Cc00_g28720 Coffea canephora HOM05D000535 ORTHO05D000427 3.0e-11 73.2 218 29.4
Duzib128G1043 Durio zibethinus HOM05D000535 ORTHO05D000427 3.0e-11 73.2 155 34.2
Lalb_Chr14g0370191 Lupinus albus HOM05D000535 ORTHO05D000427 3.0e-11 73.2 186 31.7
MELO3C002176.2 Cucumis melo HOM05D000535 ORTHO05D000427 3.9e-11 72.8 222 32.4
Glyma.16G212400 Glycine max HOM05D000535 ORTHO05D000427 3.9e-11 72.8 169 33.1
Hma1.2p1_0816F.1_g222920 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 3.9e-11 72.8 175 32.6
Lsat_1_v5_gn_2_112040 Lactuca sativa HOM05D000535 ORTHO05D000427 3.9e-11 72.8 192 31.2
Nitab4.5_0000339g0140 Nicotiana tabacum HOM05D000535 ORTHO05D000427 3.9e-11 72.8 207 29.5
HanXRQChr16g0506311 Helianthus annuus HOM05D000535 ORTHO05D000427 6.6e-11 72.0 156 32.1
HanXRQChr16g0506331 Helianthus annuus HOM05D000535 ORTHO05D000427 6.6e-11 72.0 156 32.1
Aa31LG7G2680 Aethionema arabicum HOM05D000535 ORTHO05D000427 8.6e-11 71.6 199 31.2
Lj2g0000790 Lotus japonicus HOM05D000535 ORTHO05D000427 8.6e-11 71.6 170 33.5
Lj2g0002029 Lotus japonicus HOM05D000535 ORTHO05D000427 8.6e-11 71.6 170 33.5
Oeu020484.1 Olea europaea HOM05D000535 ORTHO05D000427 8.6e-11 71.6 200 29.5
Potri.004G067800 Populus trichocarpa HOM05D000535 ORTHO05D000427 8.6e-11 71.6 224 29.0
SalBow5G1184 Salvia bowleyana HOM05D000535 ORTHO05D000427 1.1e-10 71.2 206 30.6
AUR62005428 Chenopodium quinoa HOM05D000535 ORTHO05D000427 1.5e-10 70.9 136 34.6
DCAR_011413 Daucus carota HOM05D000535 ORTHO05D000427 1.5e-10 70.9 222 31.1
CAN.G65.71 Capsicum annuum HOM05D000535 ORTHO05D000427 3.3e-10 69.7 169 30.8
Cc04_g08350 Coffea canephora HOM05D000535 ORTHO05D000427 3.3e-10 69.7 215 29.3
Nitab4.5_0012105g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 3.3e-10 69.7 183 32.2
Thecc.05G197900 Theobroma cacao HOM05D000535 ORTHO05D000427 3.3e-10 69.7 166 32.5
Ah.03g132930 Amaranthus hybridus HOM05D000535 ORTHO05D000427 4.3e-10 69.3 199 33.7
HanXRQChr16g0506341 Helianthus annuus HOM05D000535 ORTHO05D000427 4.3e-10 69.3 194 29.9
Nitab4.5_0003040g0040 Nicotiana tabacum HOM05D000535 ORTHO05D000427 5.6e-10 68.9 218 28.4
ECA238G1670 Erigeron canadensis HOM05D000535 ORTHO05D000427 7.3e-10 68.6 203 31.0
EL10Ac3g06172 Beta vulgaris HOM05D000535 ORTHO05D000427 9.5e-10 68.2 174 29.9
Lsat_1_v5_gn_2_112140 Lactuca sativa HOM05D000535 ORTHO05D000427 9.5e-10 68.2 164 30.5
Nn3g18575 Nelumbo nucifera HOM05D000535 ORTHO05D000427 9.5e-10 68.2 218 28.9
Duzib268G0791 Durio zibethinus HOM05D000535 ORTHO05D000427 1.2e-09 67.8 219 29.7
Ciclev10024584m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.6e-09 67.4 167 34.1
Atru.chr10.1154 Acer truncatum HOM05D000535 ORTHO05D000427 2.1e-09 67.0 190 31.6
Peaxi162Scf00171g00131 Petunia axillaris HOM05D000535 ORTHO05D000427 3.6e-09 66.2 204 29.9
PGSC0003DMG400029534 Solanum tuberosum HOM05D000535 ORTHO05D000427 3.6e-09 66.2 196 30.1
AUR62028781 Chenopodium quinoa HOM05D000535 ORTHO05D012047 4.7e-09 65.9 169 30.8
Ciclev10023581m.g Citrus clementina HOM05D000535 ORTHO05D000427 4.7e-09 65.9 173 32.4
CSS0003160 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 6.2e-09 65.5 157 33.8
DCAR_011421 Daucus carota HOM05D000535 ORTHO05D000427 6.2e-09 65.5 217 28.1
Duzib268G0985 Durio zibethinus HOM05D000535 ORTHO05D000427 6.2e-09 65.5 193 29.0
CSS0030185 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 8.0e-09 65.1 196 29.1
SalBow5G3210 Salvia bowleyana HOM05D000535 ORTHO05D000427 8.0e-09 65.1 206 29.1
AUR62028784 Chenopodium quinoa HOM05D000535 ORTHO05D012047 1.0e-08 64.7 169 30.8
AUR62044109 Chenopodium quinoa HOM05D000535 ORTHO05D012047 1.0e-08 64.7 169 30.8
AUR62044112 Chenopodium quinoa HOM05D000535 ORTHO05D012047 1.0e-08 64.7 169 30.8
AUR62044115 Chenopodium quinoa HOM05D000535 ORTHO05D012047 1.0e-08 64.7 169 30.8
AUR62044169 Chenopodium quinoa HOM05D000535 ORTHO05D012047 1.0e-08 64.7 169 30.8
AUR62044481 Chenopodium quinoa HOM05D000535 ORTHO05D012047 1.0e-08 64.7 169 30.8
DCAR_011411 Daucus carota HOM05D000535 ORTHO05D000427 1.4e-08 64.3 171 31.6
Solyc04g150105.1 Solanum lycopersicum HOM05D000535 ORTHO05D000427 1.4e-08 64.3 184 28.8
CAN.G65.70 Capsicum annuum HOM05D000535 ORTHO05D000427 1.8e-08 63.9 224 29.0
Nitab4.5_0007717g0030 Nicotiana tabacum HOM05D000535 ORTHO05D010923 1.8e-08 63.9 189 30.2
SalBow5G3406 Salvia bowleyana HOM05D000535 ORTHO05D000427 1.8e-08 63.9 215 27.4
AUR62005777 Chenopodium quinoa HOM05D000535 ORTHO05D012047 2.3e-08 63.5 180 29.4
AUR62043779 Chenopodium quinoa HOM05D009425 ORTHO05D012047 2.3e-08 63.5 169 30.2
Thecc.03G051800 Theobroma cacao HOM05D000535 ORTHO05D000427 2.3e-08 63.5 199 29.1
AL1G30220 Arabidopsis lyrata HOM05D000535 ORTHO05D000427 3.1e-08 63.2 206 29.1
CSS0021540 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 4.0e-08 62.8 196 29.1
Duzib268G0986 Durio zibethinus HOM05D000535 ORTHO05D000427 4.0e-08 62.8 221 28.5
Duzib268G1310 Durio zibethinus HOM05D000535 ORTHO05D000427 4.0e-08 62.8 199 28.1
COL.COLO4_29947 Corchorus olitorius HOM05D000535 ORTHO05D000427 5.2e-08 62.4 222 27.9
Duzib268G0452 Durio zibethinus HOM05D000535 ORTHO05D000427 5.2e-08 62.4 193 28.5
Sp5g28230 Schrenkiella parvula HOM05D000535 ORTHO05D000427 5.2e-08 62.4 210 29.5
AUR62014089 Chenopodium quinoa HOM05D000535 ORTHO05D000427 2.0e-07 60.5 128 34.4
Dinv10710 Davidia involucrata HOM05D000535 ORTHO05D000427 2.0e-07 60.5 193 30.1
DCAR_011416 Daucus carota HOM05D000535 ORTHO05D000427 2.6e-07 60.1 188 28.2
Duzib268G1738 Durio zibethinus HOM05D000535 ORTHO05D000427 3.4e-07 59.7 199 29.1
Solyc03g098740.1 Solanum lycopersicum HOM05D000535 ORTHO05D000427 3.4e-07 59.7 156 30.1
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 4.4e-07 59.3 183 29.0
BcaB03g15701 Brassica carinata HOM05D000535 ORTHO05D000427 1.7e-06 57.4 207 31.4
BcaC08g45655 Brassica carinata HOM05D000535 ORTHO05D000427 1.7e-06 57.4 207 31.4
Thecc.02G055700 Theobroma cacao HOM05D000535 ORTHO05D000427 1.7e-06 57.4 154 31.2
CAN.G128.72 Capsicum annuum HOM05D000535 ORTHO05D000427 2.9e-06 56.6 198 24.7
Nitab4.5_0003884g0060 Nicotiana tabacum HOM05D000535 ORTHO05D000427 4.9e-06 55.8 140 32.9
Phvul.004G130400 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 4.9e-06 55.8 179 30.2


User provided reference genes

Program Settings