Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 3.5e-244 847.8 418 100.0
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 6.4e-238 827.0 418 97.8
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 2.8e-225 785.0 407 94.1
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 9.7e-202 706.8 414 84.3
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 6.5e-198 694.1 417 81.1
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 1.2e-183 646.7 423 77.1
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 5.8e-138 495.0 309 80.3
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 6.2e-116 421.8 431 54.3
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 4.9e-113 412.1 413 53.0
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 1.4e-112 410.6 456 50.0
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 1.1e-107 394.4 454 46.7
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 2.2e-105 386.7 452 47.6
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 2.9e-105 386.3 422 50.9
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 3.8e-105 386.0 421 48.9
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 4.9e-105 385.6 411 48.9
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 6.5e-105 385.2 406 48.8
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 2.5e-104 383.3 418 49.3
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 6.0e-103 378.6 420 49.3
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 6.7e-102 375.2 431 46.6
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 1.5e-101 374.0 421 46.8
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 1.9e-101 373.6 422 48.8
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 2.8e-100 369.8 412 48.3
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 8.2e-100 368.2 419 48.7
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 1.4e-99 367.5 450 43.6
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 5.3e-99 365.5 410 48.8
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 6.9e-99 365.2 423 47.5
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 1.5e-98 364.0 425 45.9
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.9e-97 359.8 410 49.3
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 5.0e-97 359.0 420 49.0
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 6.5e-97 358.6 435 44.6
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 6.5e-97 358.6 420 49.0
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 1.1e-96 357.8 434 45.6
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 1.6e-95 354.0 445 44.0
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 1.6e-95 354.0 425 45.6
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.7e-95 353.2 409 49.1
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 3.6e-95 352.8 413 46.0
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 6.1e-95 352.1 411 49.1
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 2.3e-94 350.1 424 46.0
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 3.9e-94 349.4 421 44.9
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 4.3e-93 345.9 405 46.9
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 7.4e-93 345.1 418 43.8
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 9.7e-93 344.7 423 44.2
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 6.3e-92 342.0 400 48.0
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 1.8e-91 340.5 428 44.6
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 3.1e-91 339.7 428 46.5
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 3.1e-91 339.7 418 46.4
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 2.6e-90 336.7 422 44.5
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 2.6e-90 336.7 428 43.9
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 7.7e-90 335.1 427 44.3
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 7.7e-90 335.1 427 44.3
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 1.3e-89 334.3 429 43.4
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 1.3e-89 334.3 415 48.2
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 1.3e-89 334.3 420 45.0
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 1.7e-89 334.0 407 44.7
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 2.5e-88 330.1 435 43.9
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 5.5e-88 328.9 435 42.3
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 7.2e-88 328.6 423 46.3
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 1.2e-87 327.8 391 45.5
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 3.0e-86 323.2 377 47.5
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 3.9e-86 322.8 422 43.8
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 6.7e-86 322.0 423 43.0
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 6.7e-86 322.0 416 43.5
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 6.7e-86 322.0 418 43.8
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 1.3e-84 317.8 401 44.9
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 1.2e-82 311.2 412 42.5
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 2.6e-82 310.1 421 42.8
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 3.4e-82 309.7 412 42.7
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 4.5e-82 309.3 427 41.9
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 2.2e-81 307.0 419 43.9
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 8.5e-81 305.1 427 41.9
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 5.5e-80 302.4 428 41.8
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 2.3e-78 297.0 408 40.7
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 6.7e-78 295.4 516 36.2
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 8.8e-78 295.0 407 42.5
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 2.2e-76 290.4 436 40.6
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 1.6e-74 284.3 407 41.5
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 8.5e-73 278.5 411 39.4
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.1e-72 278.1 405 40.0
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 1.5e-72 277.7 413 41.4
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 9.4e-72 275.0 428 38.6
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 6.1e-71 272.3 428 38.6
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 2.3e-70 270.4 426 39.4
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 1.2e-69 268.1 433 39.0
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 1.3e-68 264.6 424 38.9
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 2.7e-66 256.9 421 39.0
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 3.5e-66 256.5 253 51.0
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 6.1e-63 245.7 257 47.5
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 2.4e-59 233.8 443 34.5
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.0e-57 228.4 260 46.5
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 2.9e-57 226.9 201 54.7
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 6.5e-57 225.7 305 44.3
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 4.2e-56 223.0 414 35.7
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 1.5e-53 214.5 206 52.4
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 2.0e-53 214.2 305 43.9
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 3.6e-47 193.4 152 55.3
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 1.4e-46 191.4 413 31.5
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 5.2e-46 189.5 152 53.9
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 2.2e-44 184.1 151 54.3
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 6.0e-42 176.0 156 57.7
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 3.9e-41 173.3 123 59.3
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.5e-40 171.4 198 42.9
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.5e-40 171.4 198 42.9
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 2.5e-40 170.6 155 50.3
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 1.2e-39 168.3 187 44.9
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 3.1e-38 163.7 287 36.2
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 4.0e-38 163.3 112 59.8
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 5.2e-38 162.9 153 56.2
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 5.2e-38 162.9 177 50.3
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 8.9e-38 162.2 148 56.8
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 5.8e-37 159.5 148 56.1
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 3.7e-36 156.8 129 52.7
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 1.9e-35 154.5 474 27.2
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 4.1e-35 153.3 159 52.2
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 5.4e-35 152.9 266 38.7
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 5.4e-35 152.9 407 29.7
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 1.6e-34 151.4 140 55.0
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 7.8e-34 149.1 162 48.1
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 6.6e-33 146.0 163 48.5
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 1.1e-30 138.7 163 47.9
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 1.8e-30 137.9 184 41.8
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 5.2e-30 136.3 145 41.4
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 4.4e-29 133.3 182 42.3
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 1.9e-27 127.9 288 35.1
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 1.2e-26 125.2 151 46.4
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 4.3e-24 116.7 340 31.2
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 7.3e-24 115.9 130 36.9
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 2.1e-23 114.4 139 50.4
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 4.7e-23 113.2 112 50.9
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 6.8e-22 109.4 138 46.4
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.2e-15 88.6 132 39.4
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 2.0e-13 81.3 122 37.7
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 3.4e-13 80.5 168 34.5
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 3.3e-08 63.9 122 36.9
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 5.6e-08 63.2 48 60.4


User provided reference genes

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