Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g028940 Solanum pennellii HOM05D005071 ORTHO05D006069 6.0e-39 163.7 82 100.0
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 7.8e-31 136.7 69 97.1
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 7.8e-31 136.7 69 97.1
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 7.8e-31 136.7 69 97.1
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.4e-27 125.9 69 89.9
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.4e-27 125.9 69 89.9
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 1.5e-26 122.5 69 85.5
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 5.4e-24 114.0 71 77.5
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.2e-23 112.8 72 75.0
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 2.7e-23 111.7 69 73.9
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 2.7e-23 111.7 69 78.3
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 3.5e-23 111.3 76 75.0
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 3.5e-23 111.3 72 73.6
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 4.6e-23 110.9 69 78.3
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 6.0e-23 110.5 69 78.3
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 7.9e-23 110.2 69 75.4
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 1.3e-22 109.4 69 73.9
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 1.3e-22 109.4 69 73.9
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 1.8e-22 109.0 69 75.4
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 1.8e-22 109.0 71 77.5
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 1.8e-22 109.0 71 77.5
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 1.8e-22 109.0 69 76.8
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 1.8e-22 109.0 76 72.4
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 2.3e-22 108.6 69 75.4
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 2.3e-22 108.6 69 75.4
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 2.3e-22 108.6 69 75.4
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 3.0e-22 108.2 69 75.4
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 3.0e-22 108.2 72 70.8
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 3.9e-22 107.8 69 75.4
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 3.9e-22 107.8 69 78.3
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 3.9e-22 107.8 69 75.4
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 3.9e-22 107.8 69 75.4
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 3.9e-22 107.8 69 75.4
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 3.9e-22 107.8 69 73.9
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 3.9e-22 107.8 69 73.9
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 3.9e-22 107.8 69 76.8
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 3.9e-22 107.8 70 74.3
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 5.1e-22 107.5 69 73.9
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 5.1e-22 107.5 69 73.9
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 5.1e-22 107.5 69 73.9
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 5.1e-22 107.5 69 71.0
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 5.1e-22 107.5 69 76.8
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 6.7e-22 107.1 69 73.9
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 6.7e-22 107.1 67 73.1
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 6.7e-22 107.1 69 76.8
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 6.7e-22 107.1 69 76.8
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 8.7e-22 106.7 69 72.5
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 8.7e-22 106.7 69 73.9
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 8.7e-22 106.7 69 75.4
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 1.1e-21 106.3 69 73.9
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.1e-21 106.3 69 73.9
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.5e-21 105.9 72 69.4
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 1.5e-21 105.9 69 72.5
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 1.9e-21 105.5 69 73.9
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 1.9e-21 105.5 70 71.4
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 1.9e-21 105.5 69 75.4
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 2.5e-21 105.1 69 71.0
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 3.3e-21 104.8 69 73.9
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 3.3e-21 104.8 69 72.5
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 3.3e-21 104.8 69 75.4
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 3.3e-21 104.8 69 69.6
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 4.3e-21 104.4 69 72.5
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 4.3e-21 104.4 69 73.9
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 4.3e-21 104.4 69 71.0
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 4.3e-21 104.4 69 71.0
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 5.6e-21 104.0 69 72.5
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 5.6e-21 104.0 69 72.5
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 5.6e-21 104.0 70 72.9
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 7.4e-21 103.6 69 73.9
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 9.6e-21 103.2 69 72.5
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 1.3e-20 102.8 69 69.6
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 1.6e-20 102.4 69 71.0
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 1.6e-20 102.4 69 71.0
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 2.1e-20 102.1 69 71.0
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 2.8e-20 101.7 69 71.0
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 3.7e-20 101.3 67 70.1
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 3.7e-20 101.3 69 69.6
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 3.7e-20 101.3 69 69.6
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 3.7e-20 101.3 69 69.6
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 3.7e-20 101.3 69 69.6
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 4.8e-20 100.9 69 72.5
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 6.2e-20 100.5 69 69.6
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 6.2e-20 100.5 69 69.6
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 6.2e-20 100.5 69 69.6
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 6.2e-20 100.5 69 69.6
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 8.1e-20 100.1 69 68.1
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 1.4e-19 99.4 81 61.7
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.4e-19 99.4 76 67.1
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 1.8e-19 99.0 81 61.7
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 3.1e-19 98.2 75 70.7
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 4.0e-19 97.8 76 65.8
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 6.9e-19 97.1 76 65.8
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.5e-18 95.9 94 53.2
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 1.5e-18 95.9 70 70.0
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 2.6e-18 95.1 69 68.1
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 7.6e-18 93.6 75 64.0
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 7.6e-18 93.6 78 62.8
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 2.2e-17 92.0 78 59.0
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 2.9e-17 91.7 94 53.2
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 3.8e-17 91.3 52 80.8
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.4e-16 89.4 67 64.2
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 1.4e-16 89.4 64 67.2
QL10p032921 Quercus lobata HOM05D005071 ORTHO05D006069 1.9e-16 89.0 52 78.8
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.9e-16 89.0 74 56.8
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 1.6e-15 85.9 48 83.3
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 2.7e-15 85.1 116 45.7
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 4.6e-15 84.3 69 66.7
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 4.3e-13 77.8 65 55.4
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 4.3e-13 77.8 65 55.4
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 5.7e-13 77.4 72 50.0
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 4.0e-11 71.2 92 45.7
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 7.6e-10 67.0 47 68.1
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 7.6e-10 67.0 47 68.1
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 7.6e-10 67.0 47 68.1
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 1.0e-09 66.6 69 50.7
SMO112G0110 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 2.9e-09 65.1 59 52.5
SMO364G0565 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.2e-07 59.7 69 49.3
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 7.9e-07 57.0 44 63.6
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 3.9e-06 54.7 66 43.9


User provided reference genes

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