Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g098120.3 Solanum lycopersicum HOM05D006309 ORTHO05D007937 1.8e-50 202.2 97 100.0
Sopen03g028820 Solanum pennellii HOM05D006309 ORTHO05D007937 1.8e-50 202.2 97 100.0
PGSC0003DMG400031051 Solanum tuberosum HOM05D006309 ORTHO05D007937 5.2e-50 200.7 97 99.0
CAN.G637.25 Capsicum annuum HOM05D006309 ORTHO05D007937 5.8e-49 197.2 97 95.9
Nitab4.5_0000936g0050 Nicotiana tabacum HOM05D006309 ORTHO05D007937 1.7e-48 195.7 97 93.8
Peaxi162Scf00171g00731 Petunia axillaris HOM05D006309 ORTHO05D007937 3.8e-48 194.5 97 92.8
Nitab4.5_0004454g0020 Nicotiana tabacum HOM05D006309 ORTHO05D007937 6.4e-48 193.7 96 92.7
Cc02_g35850 Coffea canephora HOM05D006309 ORTHO05D007937 9.2e-47 189.9 95 91.6
Psat6g155680 Pisum sativum HOM05D006309 ORTHO05D007937 2.7e-46 188.3 95 91.6
Ca_10200_v3 Cicer arietinum L. HOM05D006309 ORTHO05D007937 3.5e-46 188.0 95 90.5
Dinv24513 Davidia involucrata HOM05D006309 ORTHO05D007937 4.6e-46 187.6 95 91.6
Oeu061901.1 Olea europaea HOM05D006309 ORTHO05D007937 4.6e-46 187.6 95 91.6
Duzib205G1677 Durio zibethinus HOM05D006309 ORTHO05D007937 7.8e-46 186.8 94 91.5
Rhsim11G0104500 Rhododendron simsii HOM05D006309 ORTHO05D007937 7.8e-46 186.8 95 90.5
Manes.09G181100 Manihot esculenta HOM05D006309 ORTHO05D007937 1.3e-45 186.0 94 90.4
Ah.06g190700 Amaranthus hybridus HOM05D006309 ORTHO05D007937 1.7e-45 185.7 95 89.5
arahy.Tifrunner.gnm1.ann1.RC3JIS Arachis hypogaea HOM05D006309 ORTHO05D007937 1.7e-45 185.7 95 89.5
Lalb_Chr02g0147551 Lupinus albus HOM05D006309 ORTHO05D007937 1.7e-45 185.7 95 88.4
QL03p010963 Quercus lobata HOM05D006309 ORTHO05D007937 1.7e-45 185.7 94 91.5
vmacro16416 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 1.7e-45 185.7 95 90.5
Rhsim11G0105200 Rhododendron simsii HOM05D006309 ORTHO05D007937 2.3e-45 185.3 95 90.5
Prupe.6G304700 Prunus persica HOM05D006309 ORTHO05D007937 3.0e-45 184.9 94 91.5
arahy.Tifrunner.gnm1.ann1.P9U7KY Arachis hypogaea HOM05D006309 ORTHO05D007937 3.9e-45 184.5 95 88.4
arahy.Tifrunner.gnm1.ann1.VGN228 Arachis hypogaea HOM05D006309 ORTHO05D007937 3.9e-45 184.5 95 88.4
Cpa.g.sc48.50 Carica papaya HOM05D006309 ORTHO05D007937 3.9e-45 184.5 94 89.4
AUR62000475 Chenopodium quinoa HOM05D006309 ORTHO05D007937 5.1e-45 184.1 95 87.4
Lalb_Chr21g0310061 Lupinus albus HOM05D006309 ORTHO05D007937 5.1e-45 184.1 95 87.4
MD12G1199900 Malus domestica HOM05D006309 ORTHO05D007937 5.1e-45 184.1 94 90.4
VMungo0720G0633 Vigna mungo HOM05D006309 ORTHO05D007937 5.1e-45 184.1 95 90.5
Hund05518 Selenicereus undatus HOM05D006309 ORTHO05D007937 6.6e-45 183.7 95 89.5
Gohir.D08G174300 Gossypium hirsutum HOM05D006309 ORTHO05D007937 8.6e-45 183.3 95 89.5
Gorai.004G182000 Gossypium raimondii HOM05D006309 ORTHO05D007937 8.6e-45 183.3 95 89.5
Atru.chr12.1543 Acer truncatum HOM05D006309 ORTHO05D007937 1.1e-44 183.0 94 90.4
Phvul.007G205000 Phaseolus vulgaris HOM05D006309 ORTHO05D007937 1.5e-44 182.6 95 89.5
Migut.H01672 Erythranthe guttata HOM05D006309 ORTHO05D007937 1.9e-44 182.2 95 88.4
vmacro01669 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 1.9e-44 182.2 97 89.7
CSS0019637 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 2.5e-44 181.8 95 88.4
CSS0033999 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 2.5e-44 181.8 95 88.4
Gohir.A08G153400 Gossypium hirsutum HOM05D006309 ORTHO05D007937 2.5e-44 181.8 95 89.5
PGR083G2709 Punica granatum HOM05D006309 ORTHO05D007937 3.3e-44 181.4 93 89.2
Glyma.20G090800 Glycine max HOM05D006309 ORTHO05D007937 4.3e-44 181.0 97 86.6
Glyma.20G092200 Glycine max HOM05D006309 ORTHO05D007937 4.3e-44 181.0 97 86.6
CiPaw.04G111200 Carya illinoinensis HOM05D006309 ORTHO05D007937 7.3e-44 180.3 95 88.4
Ciclev10013195m.g Citrus clementina HOM05D006309 ORTHO05D007937 7.3e-44 180.3 94 87.2
Hma1.2p1_0759F.1_g213920 Hydrangea macrophylla HOM05D006309 ORTHO05D007937 7.3e-44 180.3 93 89.2
Medtr1g484930 Medicago truncatula HOM05D006309 ORTHO05D007937 9.6e-44 179.9 95 85.3
AUR62017099 Chenopodium quinoa HOM05D006309 ORTHO05D007937 1.2e-43 179.5 97 84.5
Thecc.03G310900 Theobroma cacao HOM05D006309 ORTHO05D007937 1.2e-43 179.5 93 88.2
Nn7g36656 Nelumbo nucifera HOM05D006309 ORTHO05D007937 1.6e-43 179.1 94 86.2
Sc16g0009400 Simmondsia chinensis HOM05D006309 ORTHO05D007937 1.6e-43 179.1 94 85.1
ECA233G1704 Erigeron canadensis HOM05D006309 ORTHO05D007937 2.8e-43 178.3 95 86.3
Lj5g0003279 Lotus japonicus HOM05D006309 ORTHO05D007937 2.8e-43 178.3 97 87.6
TPR.G2591 Trifolium pratense HOM05D006309 ORTHO05D007937 2.8e-43 178.3 95 84.2
Haze_03988 Corylus avellana HOM05D006309 ORTHO05D007937 4.7e-43 177.6 94 87.2
Potri.005G002900 Populus trichocarpa HOM05D006309 ORTHO05D007937 4.7e-43 177.6 94 87.2
GSVIVG01031328001 Vitis vinifera HOM05D006309 ORTHO05D007937 4.7e-43 177.6 95 85.3
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 6.2e-43 177.2 95 85.3
Os01g0250600 Oryza sativa ssp. japonica HOM05D006309 ORTHO05D007937 6.2e-43 177.2 96 82.3
CiPaw.07G036200 Carya illinoinensis HOM05D006309 ORTHO05D007937 8.1e-43 176.8 93 87.1
SalBow5G3054 Salvia bowleyana HOM05D006309 ORTHO05D007937 8.1e-43 176.8 95 86.3
AL1G67090 Arabidopsis lyrata HOM05D006309 ORTHO05D007937 1.1e-42 176.4 93 86.0
EL10Ac4g09558 Beta vulgaris HOM05D006309 ORTHO05D007937 1.1e-42 176.4 95 87.4
Carub.0002s0712 Capsella rubella HOM05D006309 ORTHO05D007937 1.1e-42 176.4 93 86.0
FvH4_6g08490 Fragaria vesca HOM05D006309 ORTHO05D007937 1.1e-42 176.4 94 86.2
FAN02G0285 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.1e-42 176.4 94 86.2
FAN05G1622 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.1e-42 176.4 94 86.2
FAN09G1610 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.1e-42 176.4 94 86.2
FAN14G3239 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.1e-42 176.4 94 86.2
THA.LOC104820476 Tarenaya hassleriana HOM05D006309 ORTHO05D007937 1.8e-42 175.6 93 83.9
TAR636G2194 Trochodendron aralioides HOM05D006309 ORTHO05D007937 1.8e-42 175.6 94 86.2
CARHR288700 Cardamine hirsuta HOM05D006309 ORTHO05D007937 2.4e-42 175.3 93 84.9
ClCG02G014650 Citrullus lanatus HOM05D006309 ORTHO05D007937 3.1e-42 174.9 95 83.2
Sed0021183 Sechium edule HOM05D006309 ORTHO05D007937 3.1e-42 174.9 95 83.2
Sc09g0002420 Simmondsia chinensis HOM05D006309 ORTHO05D007937 3.1e-42 174.9 95 81.1
TWI36G0052 Tripterygium wilfordii HOM05D006309 ORTHO05D007937 3.1e-42 174.9 95 84.2
Actinidia22855 Actinidia chinensis HOM05D006309 ORTHO05D007937 5.2e-42 174.1 95 84.2
AT1G57540 Arabidopsis thaliana HOM05D006309 ORTHO05D007937 5.2e-42 174.1 93 83.9
BcaB07g31141 Brassica carinata HOM05D006309 ORTHO05D007937 5.2e-42 174.1 94 83.0
BcaC04g22081 Brassica carinata HOM05D006309 ORTHO05D007937 5.2e-42 174.1 94 83.0
C09p23680 Brassica napus HOM05D006309 ORTHO05D007937 5.2e-42 174.1 94 83.0
BraA09t37510Z Brassica rapa HOM05D006309 ORTHO05D007937 5.2e-42 174.1 94 83.0
RcHm_v2.0_Chr3g0458531 Rosa chinensis HOM05D006309 ORTHO05D007937 5.2e-42 174.1 94 85.1
Sp1g28800 Schrenkiella parvula HOM05D006309 ORTHO05D007937 5.2e-42 174.1 94 83.0
ATR0796G010 Amborella trichopoda HOM05D006309 ORTHO05D007937 6.9e-42 173.7 95 85.3
Sp2g05970 Schrenkiella parvula HOM05D006309 ORTHO05D007937 9.0e-42 173.3 94 81.9
Aa31LG2G11310 Aethionema arabicum HOM05D006309 ORTHO05D007937 1.2e-41 172.9 94 83.0
BolC9t55290H Brassica oleracea HOM05D006309 ORTHO05D007937 1.2e-41 172.9 94 81.9
MELO3C004152.2 Cucumis melo HOM05D006309 ORTHO05D007937 1.2e-41 172.9 94 81.9
CDE09G0003 Ceratophyllum demersum HOM05D006309 ORTHO05D007937 1.5e-41 172.6 94 80.9
HanXRQChr08g0212181 Helianthus annuus HOM05D006309 ORTHO05D007937 1.5e-41 172.6 90 86.7
Thhalv10010969m.g Eutrema salsugineum HOM05D006309 ORTHO05D007937 2.0e-41 172.2 94 83.0
A09p18900 Brassica napus HOM05D006309 ORTHO05D007937 2.6e-41 171.8 94 81.9
FvH4_2g19190 Fragaria vesca HOM05D006309 ORTHO05D007937 4.4e-41 171.0 94 84.0
FAN24G3038 Fragaria x ananassa HOM05D006309 ORTHO05D007937 4.4e-41 171.0 94 84.0
CsaV3_2G007320 Cucumis sativus L. HOM05D006309 ORTHO05D007937 9.9e-41 169.9 95 81.1
DCAR_007528 Daucus carota HOM05D006309 ORTHO05D007937 1.3e-40 169.5 110 75.5
arahy.Tifrunner.gnm1.ann1.01IKZ7 Arachis hypogaea HOM05D006309 ORTHO05D007937 2.2e-40 168.7 128 66.4
unitig_62.g23615 Utricularia gibba HOM05D006309 ORTHO05D007937 2.2e-40 168.7 93 83.9
CANSAT54G2801 Cannabis sativa HOM05D006309 ORTHO05D007937 3.8e-40 167.9 94 83.0
FAN15G2822 Fragaria x ananassa HOM05D006309 ORTHO05D007937 8.4e-40 166.8 94 81.9
Lj4g0016187 Lotus japonicus HOM05D006309 ORTHO05D007937 2.4e-39 165.2 95 82.1
Prupe.8G045300 Prunus persica HOM05D006309 ORTHO05D007937 4.2e-39 164.5 94 83.0
Sabra13G0001700 Salix brachista HOM05D006309 ORTHO05D007937 4.2e-39 164.5 112 72.3
Aqoxy2G02488 Aquilegia oxysepala HOM05D006309 ORTHO05D007937 9.3e-39 163.3 93 76.3
PSO210G0390 Papaver somniferum HOM05D006309 ORTHO05D007937 1.6e-38 162.5 96 78.1
PSO761G0726 Papaver somniferum HOM05D006309 ORTHO05D007937 1.6e-38 162.5 96 78.1
SalBow4G0401 Salvia bowleyana HOM05D006309 ORTHO05D007937 7.8e-38 160.2 118 68.6
SalBow4G1963 Salvia bowleyana HOM05D006309 ORTHO05D007937 7.8e-38 160.2 118 68.6
SalBow4G2407 Salvia bowleyana HOM05D006309 ORTHO05D007937 7.8e-38 160.2 118 68.6
Sabra05G0000300 Salix brachista HOM05D006309 ORTHO05D007937 2.5e-36 155.2 137 59.1
Sabra05G0014400 Salix brachista HOM05D006309 ORTHO05D007937 2.5e-36 155.2 137 59.1
Cfa012394 Carpinus fangiana HOM05D006309 ORTHO05D007937 1.3e-35 152.9 84 83.3
EL10Ac4g07573 Beta vulgaris HOM05D006309 ORTHO05D007937 2.8e-35 151.8 95 77.9
Dinv30948 Davidia involucrata HOM05D006309 ORTHO05D007937 8.4e-32 140.2 71 91.5
MBI18_g10373_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 1.4e-31 139.4 94 74.5
Mapoly0075s0044 Marchantia polymorpha HOM05D006309 ORTHO05D007937 1.4e-23 112.8 95 52.6
Pp3c8_1240 Physcomitrium patens HOM05D006309 ORTHO05D007937 2.1e-22 109.0 95 52.6
HanXRQChr06g0180851 Helianthus annuus HOM05D006309 ORTHO05D007937 1.5e-20 102.8 50 92.0
HanXRQChr16g0506271 Helianthus annuus HOM05D006309 ORTHO05D007937 1.5e-20 102.8 50 92.0
Zm00001eb239560 Zea mays HOM05D006309 ORTHO05D007937 5.8e-17 90.9 50 78.0
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 7.6e-17 90.5 49 81.6
Glyma.09G093300 Glycine max HOM05D006309 ORTHO05D000504 7.6e-17 90.5 59 69.5
COL.COLO4_16932 Corchorus olitorius HOM05D006309 ORTHO05D007937 1.3e-16 89.7 45 91.1
MBI06_g06498_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 2.9e-16 88.6 51 78.4
BNapus_Darmor_BZH_scaffold_223p00020 Brassica napus HOM05D006309 ORTHO05D007937 1.1e-10 70.1 39 82.1
Potri.013G002301 Populus trichocarpa HOM05D006309 ORTHO05D007937 3.1e-10 68.6 41 78.0
TAR627G1128 Trochodendron aralioides HOM05D006309 ORTHO05D007937 4.6e-06 54.7 37 73.0


User provided reference genes

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