Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g028660 Solanum pennellii HOM05D005870 ORTHO05D007216 1.3e-80 303.1 169 100.0
Solyc03g097950.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 6.5e-80 300.8 169 99.4
PGSC0003DMG400033691 Solanum tuberosum HOM05D005870 ORTHO05D007216 4.8e-75 284.6 169 95.9
Nitab4.5_0006110g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 9.1e-66 253.8 170 87.6
Nitab4.5_0000430g0130 Nicotiana tabacum HOM05D005870 ORTHO05D007216 2.9e-64 248.8 170 85.9
Nitab4.5_0000033g0220 Nicotiana tabacum HOM05D005870 ORTHO05D007216 3.2e-63 245.4 169 82.2
Nitab4.5_0004855g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 1.2e-62 243.4 169 82.8
Peaxi162Scf00171g00927 Petunia axillaris HOM05D005870 ORTHO05D007216 3.0e-61 238.8 169 84.0
PGSC0003DMG400026946 Solanum tuberosum HOM05D005870 ORTHO05D007216 3.9e-61 238.4 171 81.9
Solyc06g072470.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 1.1e-60 236.9 168 82.7
Sopen06g028840 Solanum pennellii HOM05D005870 ORTHO05D007216 1.1e-60 236.9 168 82.7
CAN.G65.97 Capsicum annuum HOM05D005870 ORTHO05D007216 8.5e-56 220.7 170 78.2
Dinv13195 Davidia involucrata HOM05D005870 ORTHO05D007216 3.6e-54 215.3 172 75.6
Cc07_g15090 Coffea canephora HOM05D005870 ORTHO05D007216 1.8e-53 213.0 171 73.7
Migut.H02353 Erythranthe guttata HOM05D005870 ORTHO05D007216 7.5e-52 207.6 172 73.8
MSTRG.3774 Avicennia marina HOM05D005870 ORTHO05D007216 1.3e-51 206.8 173 72.8
Hma1.2p1_0308F.1_g120250 Hydrangea macrophylla HOM05D005870 ORTHO05D007216 1.3e-51 206.8 176 72.7
Oeu002170.1 Olea europaea HOM05D005870 ORTHO05D007216 1.8e-50 203.0 172 71.5
TAR381G0757 Trochodendron aralioides HOM05D005870 ORTHO05D007216 2.4e-50 202.6 171 69.0
SalBow3G2704 Salvia bowleyana HOM05D005870 ORTHO05D007216 7.7e-49 197.6 173 69.9
Thecc.01G100700 Theobroma cacao HOM05D005870 ORTHO05D007216 2.9e-48 195.7 170 67.6
AL8G42760 Arabidopsis lyrata HOM05D005870 ORTHO05D007216 8.5e-48 194.1 171 66.7
Nn5g30105 Nelumbo nucifera HOM05D005870 ORTHO05D007216 8.5e-48 194.1 170 66.5
COL.COLO4_27254 Corchorus olitorius HOM05D005870 ORTHO05D007216 1.5e-47 193.4 170 67.6
Lsat_1_v5_gn_4_141420 Lactuca sativa HOM05D005870 ORTHO05D007216 1.5e-47 193.4 171 67.3
AT5G65220 Arabidopsis thaliana HOM05D005870 ORTHO05D007216 2.5e-47 192.6 171 66.1
PGR004G1211 Punica granatum HOM05D005870 ORTHO05D007216 2.5e-47 192.6 169 68.6
DCAR_014215 Daucus carota HOM05D005870 ORTHO05D007216 4.2e-47 191.8 166 66.3
Nn1g05359 Nelumbo nucifera HOM05D005870 ORTHO05D007216 4.2e-47 191.8 171 66.1
Carub.0008s2608 Capsella rubella HOM05D005870 ORTHO05D007216 9.4e-47 190.7 172 66.9
CiPaw.04G100500 Carya illinoinensis HOM05D005870 ORTHO05D007216 9.4e-47 190.7 171 67.3
unitig_747.g21825 Utricularia gibba HOM05D000660 ORTHO05D000766 9.4e-47 190.7 165 67.3
HanXRQChr15g0484171 Helianthus annuus HOM05D005870 ORTHO05D007216 1.6e-46 189.9 173 67.6
Gohir.D11G220900 Gossypium hirsutum HOM05D005870 ORTHO05D007216 2.1e-46 189.5 169 65.7
Gorai.007G237100 Gossypium raimondii HOM05D005870 ORTHO05D007216 2.1e-46 189.5 169 65.7
MBI02_g35763_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 2.1e-46 189.5 164 68.3
vmacro07307 Vaccinium macrocarpon HOM05D005870 ORTHO05D007216 2.7e-46 189.1 171 67.3
Actinidia20008 Actinidia chinensis HOM05D005870 ORTHO05D007216 3.6e-46 188.7 169 68.0
Gohir.A11G202300 Gossypium hirsutum HOM05D005870 ORTHO05D007216 3.6e-46 188.7 169 65.7
Ciclev10026623m.g Citrus clementina HOM05D005870 ORTHO05D007216 4.7e-46 188.3 172 66.9
Duzib147G1590 Durio zibethinus HOM05D005870 ORTHO05D007216 4.7e-46 188.3 171 66.7
ECA232G4208 Erigeron canadensis HOM05D005870 ORTHO05D007216 8.0e-46 187.6 173 65.3
CARHR279150 Cardamine hirsuta HOM05D005870 ORTHO05D007216 1.8e-45 186.4 171 65.5
Rhsim10G0163500 Rhododendron simsii HOM05D005870 ORTHO05D007216 1.8e-45 186.4 171 67.3
MD00G1199600 Malus domestica HOM05D005870 ORTHO05D007216 3.0e-45 185.7 169 66.9
Duzib187G0334 Durio zibethinus HOM05D005870 ORTHO05D007216 4.0e-45 185.3 169 65.7
QL06p049269 Quercus lobata HOM05D005870 ORTHO05D007216 6.8e-45 184.5 174 66.7
Sed0015800 Sechium edule HOM05D005870 ORTHO05D007216 8.8e-45 184.1 170 65.9
Atru.chr4.42 Acer truncatum HOM05D005870 ORTHO05D007216 1.2e-44 183.7 169 66.9
Ca_17742_v3 Cicer arietinum L. HOM05D005870 ORTHO05D007216 1.5e-44 183.3 169 64.5
CDE10G0428 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 2.0e-44 183.0 146 69.2
Manes.13G093516 Manihot esculenta HOM05D005870 ORTHO05D007216 2.0e-44 183.0 172 65.1
Cpa.g.sc615.2 Carica papaya HOM05D005870 ORTHO05D007216 4.4e-44 181.8 171 67.3
CDE10G0106 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 5.7e-44 181.4 148 67.6
Potri.007G093700 Populus trichocarpa HOM05D005870 ORTHO05D007216 5.7e-44 181.4 170 66.5
Medtr8g090185 Medicago truncatula HOM05D005870 ORTHO05D007216 7.5e-44 181.0 171 63.7
Phvul.002G256700 Phaseolus vulgaris HOM05D005870 ORTHO05D007216 9.8e-44 180.6 168 66.1
Prupe.6G188000 Prunus persica HOM05D005870 ORTHO05D007216 1.3e-43 180.3 169 65.1
SGA_v2.0_scaffold54G19505 Striga asiatica HOM05D005870 ORTHO05D007216 1.3e-43 180.3 173 67.6
CANSAT01G0848 Cannabis sativa HOM05D005870 ORTHO05D007216 1.4e-42 176.8 167 65.3
Glyma.05G178000 Glycine max HOM05D005870 ORTHO05D007216 3.1e-42 175.6 168 64.3
VMungo0251G1964 Vigna mungo HOM05D005870 ORTHO05D007216 4.1e-42 175.3 170 64.7
FAN23G0590 Fragaria x ananassa HOM05D005870 ORTHO05D007216 2.0e-41 172.9 169 62.1
Glyma.08G135000 Glycine max HOM05D005870 ORTHO05D007216 2.0e-41 172.9 167 63.5
ClCG10G008830 Citrullus lanatus HOM05D005870 ORTHO05D007216 4.5e-41 171.8 172 65.1
MBI05_g37050_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 4.5e-41 171.8 111 84.7
Lj2A546G34 Lonicera japonica HOM05D005870 ORTHO05D007216 7.7e-41 171.0 150 68.0
Aqoxy6G00780 Aquilegia oxysepala HOM05D005870 ORTHO05D007216 1.0e-40 170.6 165 61.8
Lj4g0027302 Lotus japonicus HOM05D005870 ORTHO05D007216 2.3e-40 169.5 168 63.7
MD01G1031300 Malus domestica HOM05D005870 ORTHO05D007216 3.8e-40 168.7 150 67.3
AUR62003803 Chenopodium quinoa HOM05D005870 ORTHO05D007216 5.0e-40 168.3 170 59.4
Sp2g28320 Schrenkiella parvula HOM05D005870 ORTHO05D007216 5.0e-40 168.3 171 58.5
Sc03g0002050 Simmondsia chinensis HOM05D005870 ORTHO05D007216 6.6e-40 167.9 167 62.3
Thhalv10005022m.g Eutrema salsugineum HOM05D005870 ORTHO05D007216 1.1e-39 167.2 173 60.7
Lalb_Chr12g0203881 Lupinus albus HOM05D005870 ORTHO05D007216 2.5e-39 166.0 170 61.2
FAN26G0235 Fragaria x ananassa HOM05D005870 ORTHO05D007216 7.2e-39 164.5 169 59.8
RcHm_v2.0_Chr2g0113161 Rosa chinensis HOM05D005870 ORTHO05D007216 7.2e-39 164.5 169 59.8
THA.LOC104801696 Tarenaya hassleriana HOM05D005870 ORTHO05D007216 9.5e-39 164.1 151 64.2
FAN19G2750 Fragaria x ananassa HOM05D005870 ORTHO05D007216 1.2e-38 163.7 169 59.8
BcaB07g34228 Brassica carinata HOM05D005870 ORTHO05D007216 1.6e-38 163.3 168 57.7
A06p32070 Brassica napus HOM05D005870 ORTHO05D007216 1.6e-38 163.3 171 59.1
BraA06t26136Z Brassica rapa HOM05D005870 ORTHO05D007216 1.6e-38 163.3 171 59.1
FvH4_1g20710 Fragaria vesca HOM05D005870 ORTHO05D007216 1.6e-38 163.3 169 59.8
FAN28G1626 Fragaria x ananassa HOM05D005870 ORTHO05D007216 1.6e-38 163.3 169 59.2
BcaC01g02758 Brassica carinata HOM05D005870 ORTHO05D007216 2.1e-38 162.9 168 58.9
BolC3t18343H Brassica oleracea HOM05D005870 ORTHO05D007216 2.1e-38 162.9 168 58.9
C03p60860 Brassica napus HOM05D005870 ORTHO05D007216 3.6e-38 162.2 168 58.9
Lalb_Chr07g0185191 Lupinus albus HOM05D005870 ORTHO05D007216 4.7e-38 161.8 169 60.4
EL10Ac6g15115 Beta vulgaris HOM05D005870 ORTHO05D007216 6.1e-38 161.4 168 58.9
Aa31LG1G16740 Aethionema arabicum HOM05D005870 ORTHO05D007216 8.0e-38 161.0 175 58.9
A02p43790 Brassica napus HOM05D005870 ORTHO05D007216 8.0e-38 161.0 172 58.1
BraA02t09303Z Brassica rapa HOM05D005870 ORTHO05D007216 8.0e-38 161.0 172 58.1
CsaV3_4G008900 Cucumis sativus L. HOM05D005870 ORTHO05D007216 1.0e-37 160.6 151 64.9
BcaB02g09886 Brassica carinata HOM05D005870 ORTHO05D007216 1.8e-37 159.8 173 59.0
TPR.G6297 Trifolium pratense HOM05D005870 ORTHO05D007216 1.8e-37 159.8 167 56.9
TWI74G0695 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 1.5e-36 156.8 151 62.9
TWI53G1299 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 5.7e-36 154.8 149 63.8
arahy.Tifrunner.gnm1.ann1.K43FII Arachis hypogaea HOM05D005870 ORTHO05D007216 1.3e-35 153.7 153 60.1
Eucgr.I00441 Eucalyptus grandis HOM05D005870 ORTHO05D007216 2.2e-35 152.9 149 62.4
arahy.Tifrunner.gnm1.ann1.Q6429D Arachis hypogaea HOM05D005870 ORTHO05D007216 2.8e-35 152.5 153 59.5
PSO210G6840 Papaver somniferum HOM05D005870 ORTHO05D007216 4.9e-35 151.8 172 54.1
PSO447G0167 Papaver somniferum HOM05D005870 ORTHO05D007216 6.3e-35 151.4 172 54.1
Os02g0754300 Oryza sativa ssp. japonica HOM05D005870 ORTHO05D007216 4.1e-34 148.7 162 56.2
AUR62001999 Chenopodium quinoa HOM05D005870 ORTHO05D007216 5.4e-34 148.3 166 54.8
Zm00001eb249540 Zea mays HOM05D005870 ORTHO05D007216 1.0e-32 144.1 104 74.0
Psat7g055240 Pisum sativum HOM05D005870 ORTHO05D007216 1.7e-32 143.3 150 56.0
Zm00001eb255290 Zea mays HOM05D005870 ORTHO05D007216 2.3e-32 142.9 107 72.0
Hund13620 Selenicereus undatus HOM05D005870 ORTHO05D007216 5.0e-32 141.7 160 56.9
Zm00001eb335180 Zea mays HOM05D005870 ORTHO05D007216 8.6e-32 141.0 104 72.1
Zm00001eb194130 Zea mays HOM05D005870 ORTHO05D007216 1.1e-31 140.6 158 54.4
Hund16294 Selenicereus undatus HOM05D005870 ORTHO05D007216 5.6e-31 138.3 189 51.9
MELO3C018954.2 Cucumis melo HOM05D005870 ORTHO05D007216 4.7e-30 135.2 151 58.3
Sabra07G0077600 Salix brachista HOM05D005870 ORTHO05D007216 2.3e-29 132.9 283 38.9
GSVIVG01004857001 Vitis vinifera HOM05D005870 ORTHO05D007216 9.2e-26 120.9 79 83.5
GSVIVG01013304001 Vitis vinifera HOM05D005870 ORTHO05D007216 9.2e-26 120.9 79 83.5
MSTRG.15716 Avicennia marina HOM05D005870 ORTHO05D007216 4.6e-25 118.6 113 64.6
AagrBONN_evm.TU.Sc2ySwM_117.2528 Anthoceros agrestis HOM05D005870 ORTHO05D007216 1.7e-24 116.7 117 54.7
Pp3c9_19800 Physcomitrium patens HOM05D005870 ORTHO05D007216 1.9e-23 113.2 112 58.0
Mapoly0011s0026 Marchantia polymorpha HOM05D005870 ORTHO05D007216 4.7e-22 108.6 102 57.8
SMO347G0042 Selaginella moellendorffii HOM05D005870 ORTHO05D007216 4.0e-21 105.5 108 55.6
HPP92_013107 Vanilla planifolia HOM05D005870 ORTHO05D007216 5.2e-21 105.1 122 50.8
SGA_v2.0_scaffold111G31512 Striga asiatica HOM05D005870 ORTHO05D007216 1.5e-20 103.6 122 59.0
Cfa002651 Carpinus fangiana HOM05D005870 ORTHO05D007216 5.8e-20 101.7 117 55.6
Actinidia06560 Actinidia chinensis HOM05D005870 ORTHO05D007216 2.9e-19 99.4 111 58.6
Haze_24920 Corylus avellana HOM05D005870 ORTHO05D007216 2.9e-19 99.4 113 55.8
ATR0782G037 Amborella trichopoda HOM05D005870 ORTHO05D007216 2.3e-16 89.7 100 54.0
HPP92_013094 Vanilla planifolia HOM05D005870 ORTHO05D007216 5.6e-15 85.1 79 60.8
Lj5C62T6 Lonicera japonica HOM05D005870 ORTHO05D007216 1.6e-14 83.6 74 66.2
Haze_24918 Corylus avellana HOM05D009730 ORTHO05D000126 1.8e-13 80.1 174 40.2
CBR_g8034 Chara braunii HOM05D005870 ORTHO05D007216 5.2e-13 78.6 95 42.1
MBI18_g38162_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 4.4e-12 75.5 80 58.8
BolC2t12461H Brassica oleracea HOM05D005870 ORTHO05D007216 2.2e-11 73.2 51 78.4
MCO09G004 Micromonas commoda HOM05D005870 ORTHO05D007216 7.3e-07 58.2 73 43.8
C02p63940 Brassica napus HOM05D000382 ORTHO05D000391 8.1e-06 54.7 119 37.0


User provided reference genes

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