Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 8.4e-38 159.8 80 100.0
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 9.3e-37 156.4 80 97.5
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 3.5e-36 154.5 76 100.0
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 1.1e-32 142.9 80 86.2
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 1.1e-29 132.9 80 85.0
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.7e-28 128.3 80 81.2
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.7e-28 128.3 80 81.2
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.0e-27 126.3 80 77.5
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 3.0e-27 124.8 80 77.5
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 5.1e-27 124.0 80 76.2
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 6.7e-27 123.6 80 75.0
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 6.7e-27 123.6 80 75.0
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 8.8e-27 123.2 80 76.2
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.1e-26 122.9 80 73.8
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 1.1e-26 122.9 80 72.5
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 1.5e-26 122.5 80 73.8
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.5e-26 122.5 80 75.0
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.5e-26 122.5 80 75.0
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 2.0e-26 122.1 80 75.0
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 2.5e-26 121.7 76 73.7
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 3.3e-26 121.3 77 76.6
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 5.7e-26 120.6 80 73.8
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 5.7e-26 120.6 80 76.2
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 1.7e-25 119.0 80 73.8
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 1.7e-25 119.0 79 73.4
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 2.8e-25 118.2 80 71.2
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 3.7e-25 117.9 77 76.6
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 3.7e-25 117.9 80 72.5
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 4.8e-25 117.5 80 70.0
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 4.8e-25 117.5 80 73.8
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 4.8e-25 117.5 80 72.5
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 4.8e-25 117.5 77 77.9
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 6.3e-25 117.1 78 71.8
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 6.3e-25 117.1 80 71.2
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 6.3e-25 117.1 80 71.2
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 6.3e-25 117.1 80 71.2
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 6.3e-25 117.1 80 72.5
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 1.1e-24 116.3 80 71.2
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.1e-24 116.3 80 68.8
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.1e-24 116.3 80 71.2
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 1.8e-24 115.5 80 71.2
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 1.8e-24 115.5 80 71.2
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 1.8e-24 115.5 80 70.0
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.8e-24 115.5 102 61.8
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 1.8e-24 115.5 76 72.4
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.4e-24 115.2 80 67.5
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 2.4e-24 115.2 73 72.6
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 2.4e-24 115.2 80 68.8
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 3.1e-24 114.8 73 74.0
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 3.1e-24 114.8 80 70.0
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 3.1e-24 114.8 80 68.8
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 4.1e-24 114.4 78 70.5
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 4.1e-24 114.4 80 70.0
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 5.3e-24 114.0 73 74.0
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 5.3e-24 114.0 80 70.0
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 6.9e-24 113.6 80 70.0
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 9.1e-24 113.2 73 69.9
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 9.1e-24 113.2 73 72.6
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 9.1e-24 113.2 73 72.6
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 1.2e-23 112.8 76 68.4
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.2e-23 112.8 80 66.2
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 1.2e-23 112.8 73 72.6
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 1.2e-23 112.8 73 72.6
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.2e-23 112.8 78 70.5
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.5e-23 112.5 73 72.6
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.5e-23 112.5 73 72.6
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.0e-23 112.1 72 72.2
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.0e-23 112.1 77 74.0
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 2.0e-23 112.1 77 70.1
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.6e-23 111.7 73 72.6
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 3.4e-23 111.3 77 70.1
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 3.4e-23 111.3 80 68.8
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 3.4e-23 111.3 80 66.2
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 3.4e-23 111.3 73 71.2
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 4.5e-23 110.9 78 67.9
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 7.7e-23 110.2 80 67.5
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 7.7e-23 110.2 80 68.8
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 1.0e-22 109.8 77 68.8
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.3e-22 109.4 80 66.2
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.3e-22 109.4 78 66.7
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.7e-22 109.0 80 66.2
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 2.9e-22 108.2 80 67.5
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 2.9e-22 108.2 78 67.9
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 5.0e-22 107.5 77 67.5
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 6.5e-22 107.1 80 65.0
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 6.5e-22 107.1 80 65.0
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 6.5e-22 107.1 80 65.0
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 6.5e-22 107.1 72 69.4
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 8.5e-22 106.7 79 65.8
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 8.5e-22 106.7 79 65.8
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 1.1e-21 106.3 77 71.4
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.1e-21 106.3 87 62.1
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.1e-21 106.3 80 66.2
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 1.4e-21 105.9 80 63.8
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 1.4e-21 105.9 80 63.8
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 1.4e-21 105.9 80 62.5
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 3.2e-21 104.8 80 62.5
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 5.5e-21 104.0 65 73.8
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 7.2e-21 103.6 61 77.0
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 9.4e-21 103.2 76 71.1
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 9.4e-21 103.2 76 71.1
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 9.4e-21 103.2 76 71.1
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 9.4e-21 103.2 76 71.1
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.1e-20 102.1 61 75.4
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 2.1e-20 102.1 64 73.4
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 2.7e-20 101.7 63 74.6
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 2.7e-20 101.7 58 79.3
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 3.6e-20 101.3 78 62.8
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 3.6e-20 101.3 73 61.6
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 3.6e-20 101.3 73 65.8
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 3.6e-20 101.3 77 59.7
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 4.7e-20 100.9 73 61.6
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 4.7e-20 100.9 74 67.6
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 6.1e-20 100.5 60 76.7
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.4e-19 99.4 72 62.5
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.8e-19 99.0 59 76.3
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.8e-19 99.0 84 58.3
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 3.9e-19 97.8 65 67.7
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.9e-19 97.8 67 64.2
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 5.1e-19 97.4 65 67.7
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 8.8e-19 96.7 80 63.8
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 8.8e-19 96.7 53 81.1
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 1.1e-18 96.3 79 58.2
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 3.3e-18 94.7 77 59.7
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 4.4e-18 94.4 77 61.0
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 4.4e-18 94.4 77 59.7
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 9.7e-18 93.2 68 63.2
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 1.7e-17 92.4 57 73.7
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.7e-17 92.4 80 57.5
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 2.2e-17 92.0 68 55.9
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 2.8e-17 91.7 54 74.1
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 3.7e-17 91.3 70 55.7
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 1.8e-16 89.0 59 64.4
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 2.4e-16 88.6 55 70.9
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 5.3e-16 87.4 64 59.4
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 2.0e-15 85.5 74 56.8
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.6e-15 85.1 81 46.9
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 2.6e-15 85.1 70 52.9
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.1e-13 79.7 68 55.9
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 9.7e-10 66.6 56 51.8
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 1.3e-09 66.2 72 44.4
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 2.2e-09 65.5 66 50.0
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 4.8e-09 64.3 45 64.4
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.8e-08 62.4 69 43.5
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 1.8e-08 62.4 73 39.7


User provided reference genes

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