Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 0.0e+00 1363.6 694 100.0
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 0.0e+00 1343.9 694 98.3
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 0.0e+00 1086.6 694 81.4
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 0.0e+00 1075.8 696 80.3
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 0.0e+00 1075.5 692 79.8
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 3.3e-311 1071.2 734 76.4
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 6.4e-267 924.1 492 96.5
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 6.1e-217 758.1 698 55.6
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 3.0e-216 755.7 702 54.8
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 7.4e-215 751.1 706 56.2
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 5.3e-213 745.0 702 55.6
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 2.2e-211 739.6 704 55.4
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 3.8e-211 738.8 696 54.6
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 6.5e-211 738.0 696 56.6
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 3.2e-210 735.7 705 54.2
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 4.2e-210 735.3 708 54.1
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.8e-208 729.9 693 54.5
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 5.2e-208 728.4 693 54.5
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 2.2e-206 723.0 706 54.8
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 1.8e-205 719.9 707 54.9
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 2.0e-204 716.5 697 54.8
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 3.5e-204 715.7 681 54.2
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 5.9e-204 714.9 722 54.6
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 2.2e-203 713.0 695 54.2
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 1.1e-202 710.7 697 52.7
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.0e-200 704.1 691 53.5
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 2.3e-200 703.0 721 53.5
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 3.0e-200 702.6 702 51.3
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 9.8e-199 697.6 695 51.8
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 9.1e-197 691.0 668 55.5
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 1.0e-195 687.6 696 51.7
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 1.3e-195 687.2 705 51.5
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 1.3e-195 687.2 703 52.1
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 2.3e-195 686.4 694 51.6
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 5.5e-194 681.8 751 49.8
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 9.5e-194 681.0 695 51.1
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 1.6e-193 680.2 710 51.4
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 3.6e-193 679.1 693 51.9
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 6.1e-193 678.3 702 51.7
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 4.0e-192 675.6 702 50.1
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 8.8e-192 674.5 694 52.2
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 1.2e-191 674.1 694 51.2
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 1.2e-191 674.1 696 51.4
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 4.4e-191 672.2 695 52.8
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 5.7e-191 671.8 704 51.6
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 5.7e-191 671.8 700 51.9
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 2.2e-190 669.8 707 51.9
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 3.1e-189 666.0 697 50.8
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 2.7e-188 662.9 698 51.3
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 3.5e-188 662.5 699 50.1
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 4.5e-188 662.1 694 50.3
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 1.5e-183 647.1 692 49.7
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 4.9e-182 642.1 584 58.6
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 3.2e-181 639.4 702 49.0
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 2.3e-179 633.3 701 48.9
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 3.9e-179 632.5 700 48.4
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 6.6e-179 631.7 699 49.5
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 6.2e-177 625.2 655 52.1
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 1.1e-176 624.4 697 48.9
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 3.4e-175 619.4 609 53.2
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 5.8e-175 618.6 702 48.3
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 1.3e-174 617.5 514 59.3
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 1.4e-173 614.0 702 48.3
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 3.2e-173 612.8 707 47.8
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 8.6e-171 604.7 691 48.0
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 1.2e-169 600.9 708 46.2
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 8.9e-168 594.7 708 46.0
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 8.9e-168 594.7 518 57.1
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 2.0e-167 593.6 696 46.0
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 1.1e-165 587.8 603 49.6
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 1.1e-165 587.8 699 46.9
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.4e-165 587.4 678 47.5
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 7.8e-164 581.6 675 47.4
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 7.3e-162 575.1 678 46.5
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 7.6e-159 565.1 700 45.3
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 4.1e-157 559.3 605 50.7
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 1.5e-151 540.8 460 58.7
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 1.5e-151 540.8 699 44.2
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 2.4e-149 533.5 531 55.6
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 3.2e-149 533.1 510 52.0
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 2.1e-145 520.4 606 47.9
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 3.2e-141 506.5 446 56.3
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 9.6e-138 495.0 446 56.1
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 2.8e-137 493.4 403 58.8
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 1.5e-127 461.1 554 46.0
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 2.2e-126 457.2 444 54.1
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 6.5e-126 455.7 636 44.2
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 2.2e-121 440.7 464 50.9
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 4.8e-113 412.9 534 44.9
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 8.2e-105 385.6 425 49.9
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 2.6e-103 380.6 537 41.2
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 2.3e-99 367.5 490 41.6
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 1.6e-95 354.8 658 36.2
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 4.0e-91 340.1 770 30.9
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 2.4e-88 330.9 840 31.4
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 9.4e-85 318.9 378 48.7
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 4.7e-84 316.6 693 32.6
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 6.1e-84 316.2 693 32.5
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 7.0e-80 302.8 232 62.9
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 3.6e-76 290.4 831 28.6
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 5.0e-70 270.0 587 32.2
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 6.8e-67 259.6 694 31.6
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 9.2e-64 249.2 420 38.3
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 1.2e-63 248.8 207 59.4
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 7.3e-61 239.6 186 62.9
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 4.2e-40 170.6 320 37.5
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 3.0e-38 164.5 159 47.8
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.5e-37 162.2 146 56.2
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 1.5e-34 152.1 131 54.2
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 2.7e-31 141.4 308 31.5
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 1.3e-30 139.0 212 42.0
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 3.0e-30 137.9 205 39.5
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 1.6e-28 132.1 144 53.5
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 1.4e-27 129.0 204 38.7
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 1.8e-27 128.6 89 62.9
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 4.0e-27 127.5 237 38.4
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 3.9e-22 110.9 247 33.6
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 8.7e-22 109.8 69 76.8
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 2.1e-20 105.1 106 51.9
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 6.0e-15 87.0 59 64.4
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 3.3e-13 81.3 101 46.5
Solyc05g150129.1 Solanum lycopersicum HOM05D006558 ORTHO05D008424 5.6e-13 80.5 76 56.6
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 3.7e-12 77.8 43 69.8
CAN.G261.16 Capsicum annuum HOM05D000222 ORTHO05D000001 2.2e-09 68.6 195 33.8
Nn7g37167 Nelumbo nucifera HOM05D006558 ORTHO05D008424 8.4e-09 66.6 47 63.8
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 1.1e-08 66.2 67 50.7
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 1.9e-08 65.5 129 34.1
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 4.6e-07 60.8 71 47.9
SMO139G0046 Selaginella moellendorffii HOM05D002001 ORTHO05D006833 3.0e-06 58.2 313 23.0
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 5.1e-06 57.4 296 21.6
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 5.1e-06 57.4 142 31.0
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 6.7e-06 57.0 296 21.3


User provided reference genes

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