Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 8.6e-35 149.8 79 100.0
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 1.5e-31 139.0 79 96.2
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 3.0e-27 124.8 79 84.8
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 4.3e-26 120.9 79 83.5
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 5.8e-23 110.5 62 91.9
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 6.4e-22 107.1 68 79.4
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 6.4e-22 107.1 79 74.7
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 8.4e-22 106.7 64 87.5
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.1e-21 106.3 64 82.8
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.1e-21 106.3 64 82.8
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.1e-21 106.3 68 77.9
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.1e-21 106.3 68 77.9
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.9e-21 105.5 68 77.9
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.9e-21 105.5 68 77.9
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 2.4e-21 105.1 64 82.8
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.2e-21 104.8 69 78.3
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 4.2e-21 104.4 71 77.5
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 4.2e-21 104.4 79 70.9
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 5.4e-21 104.0 79 74.7
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 5.4e-21 104.0 79 70.9
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 5.4e-21 104.0 68 77.9
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 7.1e-21 103.6 79 70.9
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 7.1e-21 103.6 61 95.1
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 7.1e-21 103.6 70 77.1
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 9.3e-21 103.2 68 77.9
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 9.3e-21 103.2 73 72.6
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 1.2e-20 102.8 74 73.0
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 1.2e-20 102.8 79 70.9
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.2e-20 102.8 76 71.1
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 1.6e-20 102.4 66 78.8
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 1.6e-20 102.4 70 75.7
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 1.6e-20 102.4 74 73.0
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 2.1e-20 102.1 65 76.9
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 2.1e-20 102.1 77 68.8
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 2.1e-20 102.1 79 68.4
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 2.7e-20 101.7 77 71.4
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 2.7e-20 101.7 79 69.6
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 3.5e-20 101.3 60 81.7
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 3.5e-20 101.3 81 67.9
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 3.5e-20 101.3 68 76.5
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 3.5e-20 101.3 63 81.0
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 3.5e-20 101.3 71 76.1
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 3.5e-20 101.3 68 76.5
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 4.6e-20 100.9 78 70.5
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 4.6e-20 100.9 62 79.0
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 6.0e-20 100.5 74 71.6
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 7.8e-20 100.1 69 73.9
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 7.8e-20 100.1 69 79.7
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 7.8e-20 100.1 77 68.8
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 1.0e-19 99.8 62 77.4
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.0e-19 99.8 65 76.9
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 1.3e-19 99.4 58 84.5
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 1.3e-19 99.4 68 75.0
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.3e-19 99.4 68 73.5
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 1.7e-19 99.0 79 67.1
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.7e-19 99.0 66 74.2
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.3e-19 98.6 67 73.1
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.3e-19 98.6 66 74.2
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 2.3e-19 98.6 69 68.1
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 3.0e-19 98.2 62 77.4
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 3.9e-19 97.8 59 84.7
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 3.9e-19 97.8 62 82.3
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 3.9e-19 97.8 62 75.8
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 3.9e-19 97.8 76 68.4
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 3.9e-19 97.8 58 79.3
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 3.9e-19 97.8 76 68.4
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 5.1e-19 97.4 74 68.9
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 5.1e-19 97.4 72 70.8
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 5.1e-19 97.4 72 70.8
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 5.1e-19 97.4 70 68.6
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 5.1e-19 97.4 82 64.6
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 6.6e-19 97.1 62 80.6
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 6.6e-19 97.1 62 80.6
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 6.6e-19 97.1 62 80.6
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 6.6e-19 97.1 69 72.5
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 6.6e-19 97.1 63 76.2
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 8.7e-19 96.7 76 65.8
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 1.1e-18 96.3 59 83.1
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 1.1e-18 96.3 59 83.1
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 1.5e-18 95.9 59 83.1
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 1.5e-18 95.9 68 73.5
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.5e-18 95.9 79 67.1
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.5e-18 95.9 76 69.7
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 1.5e-18 95.9 64 73.4
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 1.9e-18 95.5 69 72.5
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 1.9e-18 95.5 62 80.6
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 1.9e-18 95.5 69 68.1
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 2.5e-18 95.1 74 66.2
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 3.3e-18 94.7 69 73.9
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 3.3e-18 94.7 63 77.8
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 4.3e-18 94.4 63 74.6
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 4.3e-18 94.4 63 74.6
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 5.6e-18 94.0 79 65.8
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 5.6e-18 94.0 59 79.7
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 7.3e-18 93.6 69 72.5
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 7.3e-18 93.6 69 72.5
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 7.3e-18 93.6 69 71.0
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 7.3e-18 93.6 69 72.5
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 7.3e-18 93.6 75 62.7
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 7.3e-18 93.6 71 70.4
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 7.3e-18 93.6 69 66.7
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 9.6e-18 93.2 62 77.4
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 9.6e-18 93.2 60 73.3
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 9.6e-18 93.2 68 73.5
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 9.6e-18 93.2 69 69.6
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 1.3e-17 92.8 68 69.1
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.3e-17 92.8 79 65.8
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.6e-17 92.4 69 72.5
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 2.8e-17 91.7 75 68.0
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 2.8e-17 91.7 76 64.5
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 2.8e-17 91.7 60 76.7
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 3.6e-17 91.3 70 68.6
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 6.2e-17 90.5 76 68.4
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 8.1e-17 90.1 69 65.2
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 8.1e-17 90.1 55 81.8
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 1.8e-16 89.0 63 69.8
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 1.8e-16 89.0 66 66.7
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 1.8e-16 89.0 62 72.6
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 2.4e-16 88.6 61 72.1
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.4e-16 88.6 59 69.5
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 3.1e-16 88.2 62 69.4
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 3.1e-16 88.2 79 62.0
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 3.1e-16 88.2 79 62.0
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 3.1e-16 88.2 79 62.0
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 3.1e-16 88.2 66 65.2
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 4.0e-16 87.8 62 71.0
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 4.0e-16 87.8 66 65.2
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 5.3e-16 87.4 66 65.2
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 6.9e-16 87.0 71 64.8
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 9.0e-16 86.7 68 64.7
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 1.2e-15 86.3 55 76.4
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.6e-15 85.1 79 60.8
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 2.6e-15 85.1 54 75.9
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.3e-14 82.8 76 60.5
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 1.4e-13 79.3 57 66.7
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 2.1e-12 75.5 61 70.5
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.1e-12 75.5 72 55.6
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.1e-12 75.5 72 55.6
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.7e-12 75.1 74 55.4
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 2.7e-12 75.1 67 59.7
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 3.0e-11 71.6 64 57.8
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 3.9e-11 71.2 50 74.0
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 1.1e-10 69.7 58 60.3
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.1e-10 69.7 58 60.3
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 1.1e-10 69.7 71 50.7
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.1e-10 69.7 61 63.9
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 4.3e-10 67.8 58 53.4
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 4.3e-10 67.8 71 47.9
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 5.6e-10 67.4 74 48.6
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 7.4e-10 67.0 69 53.6
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 2.8e-09 65.1 51 58.8
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.4e-08 62.8 58 51.7
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 1.8e-08 62.4 50 60.0
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 6.9e-08 60.5 68 47.1
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 3.4e-07 58.2 81 42.0
Glyma.03G125300 Glycine max HOM05D004624 ORTHO05D005357 4.9e-06 54.3 37 73.0
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 6.4e-06 53.9 34 76.5


User provided reference genes

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