Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 1.3e-50 202.6 93 100.0
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 2.8e-48 194.9 98 93.9
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.8e-48 194.9 98 93.9
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.8e-48 194.9 98 93.9
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 2.9e-42 174.9 93 86.0
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 6.6e-42 173.7 93 84.9
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 5.6e-41 170.6 93 82.8
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 4.0e-39 164.5 84 85.7
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 8.9e-39 163.3 91 76.9
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 7.5e-38 160.2 91 80.2
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 9.8e-38 159.8 78 85.9
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 9.8e-38 159.8 91 74.7
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.2e-37 158.7 78 84.6
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 2.2e-37 158.7 87 79.3
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 2.9e-37 158.3 82 82.9
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 2.9e-37 158.3 81 85.2
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 6.4e-37 157.1 91 76.9
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 6.4e-37 157.1 91 78.0
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 8.3e-37 156.8 83 81.9
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 8.3e-37 156.8 80 82.5
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 1.1e-36 156.4 77 87.0
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.9e-36 155.6 82 78.0
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.9e-36 155.6 82 78.0
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 2.4e-36 155.2 78 82.1
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 3.2e-36 154.8 91 73.6
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 3.2e-36 154.8 79 83.5
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 5.4e-36 154.1 77 84.4
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 9.2e-36 153.3 82 78.0
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 9.2e-36 153.3 93 74.2
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.2e-35 152.9 91 73.6
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 1.2e-35 152.9 93 74.2
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 1.6e-35 152.5 93 74.2
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 1.6e-35 152.5 80 81.2
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 2.0e-35 152.1 87 75.9
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 2.0e-35 152.1 91 71.4
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 2.0e-35 152.1 87 75.9
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 2.0e-35 152.1 90 74.4
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 2.7e-35 151.8 87 74.7
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 2.7e-35 151.8 78 82.1
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 3.5e-35 151.4 89 74.2
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 4.6e-35 151.0 88 75.0
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 6.0e-35 150.6 78 82.1
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 7.8e-35 150.2 89 74.2
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 7.8e-35 150.2 87 77.0
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 1.3e-34 149.4 78 80.8
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 1.7e-34 149.1 77 81.8
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 1.7e-34 149.1 80 80.0
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 2.3e-34 148.7 89 73.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 3.0e-34 148.3 89 70.8
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 3.0e-34 148.3 76 81.6
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 3.0e-34 148.3 89 73.0
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 5.0e-34 147.5 79 78.5
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 6.6e-34 147.1 78 78.2
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 6.6e-34 147.1 79 78.5
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 8.6e-34 146.7 86 72.1
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 1.1e-33 146.4 77 80.5
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.5e-33 146.0 93 68.8
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 2.5e-33 145.2 80 75.0
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 3.3e-33 144.8 81 75.3
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 3.3e-33 144.8 77 77.9
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 4.3e-33 144.4 80 76.2
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 4.3e-33 144.4 80 75.0
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 4.3e-33 144.4 93 69.9
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 4.3e-33 144.4 82 78.0
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 5.6e-33 144.1 91 68.1
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 5.6e-33 144.1 80 75.0
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 9.5e-33 143.3 88 72.7
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 9.5e-33 143.3 95 69.5
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 1.6e-32 142.5 80 73.8
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 2.1e-32 142.1 93 67.7
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 2.8e-32 141.7 88 71.6
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 2.8e-32 141.7 93 68.8
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 4.7e-32 141.0 77 75.3
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 2.3e-31 138.7 77 74.0
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 3.1e-31 138.3 83 72.3
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 3.4e-30 134.8 76 72.4
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 7.5e-30 133.7 83 69.9
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 3.7e-29 131.3 128 51.6
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 2.5e-25 118.6 144 45.8
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 1.1e-20 103.2 77 62.3
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 9.2e-20 100.1 86 55.8
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 5.1e-18 94.4 42 92.9
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.9e-17 92.4 43 88.4
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 1.6e-16 89.4 198 30.3
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 8.1e-16 87.0 41 87.8
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 3.1e-15 85.1 41 85.4
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 8.9e-15 83.6 42 81.0
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 1.9e-12 75.9 50 64.0
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 7.1e-12 73.9 42 71.4
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.5e-11 71.6 43 67.4
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 1.0e-10 70.1 53 64.2
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 5.1e-10 67.8 32 87.5
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 5.1e-10 67.8 43 62.8
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 1.5e-09 66.2 38 73.7
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 1.3e-08 63.2 79 39.2
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.3e-08 63.2 79 39.2
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 1.3e-08 63.2 94 36.2
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 1.6e-08 62.8 79 38.0
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 1.6e-08 62.8 79 39.2
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 2.8e-08 62.0 79 39.2
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 3.6e-08 61.6 79 36.7
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 3.6e-08 61.6 86 34.9
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 4.8e-08 61.2 90 34.4
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 4.8e-08 61.2 79 39.2
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 6.2e-08 60.8 79 36.7
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 6.2e-08 60.8 79 38.0
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 8.1e-08 60.5 83 36.1
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 8.1e-08 60.5 79 38.0
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 38.0
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 36.7
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 36.7
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 36.7
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.4e-07 59.7 87 35.6
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 1.4e-07 59.7 87 34.5
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.4e-07 59.7 79 38.0
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 1.4e-07 59.7 79 38.0
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 1.8e-07 59.3 77 37.7
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 1.8e-07 59.3 79 35.4
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 2.4e-07 58.9 90 34.4
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 2.4e-07 58.9 79 35.4
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 3.1e-07 58.5 79 36.7
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 3.1e-07 58.5 79 36.7
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 3.1e-07 58.5 79 35.4
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 3.1e-07 58.5 79 35.4
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 3.1e-07 58.5 79 35.4
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 4.0e-07 58.2 83 34.9
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 4.0e-07 58.2 79 35.4
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 4.0e-07 58.2 90 32.2
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 4.0e-07 58.2 84 36.9
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 4.0e-07 58.2 88 34.1
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 5.3e-07 57.8 79 35.4
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 5.3e-07 57.8 77 36.4
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 6.9e-07 57.4 77 33.8
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 6.9e-07 57.4 90 32.2
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 6.9e-07 57.4 79 35.4
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 6.9e-07 57.4 83 34.9
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 6.9e-07 57.4 79 34.2
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 6.9e-07 57.4 87 34.5
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 9.0e-07 57.0 79 35.4
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 9.0e-07 57.0 79 35.4
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 1.2e-06 56.6 84 34.5
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 1.2e-06 56.6 79 36.7
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.2e-06 56.6 79 34.2
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 1.5e-06 56.2 90 33.3
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 1.5e-06 56.2 79 35.4
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 1.5e-06 56.2 79 34.2
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 2.0e-06 55.8 84 34.5
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.0e-06 55.8 84 34.5
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.0e-06 55.8 84 34.5
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.0e-06 55.8 84 34.5
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 2.0e-06 55.8 84 34.5
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 2.6e-06 55.5 87 32.2
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 2.6e-06 55.5 79 34.2
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 2.6e-06 55.5 79 34.2
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 3.4e-06 55.1 83 33.7
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 4.4e-06 54.7 79 32.9
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 4.4e-06 54.7 83 34.9
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 5.8e-06 54.3 83 33.7
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 5.8e-06 54.3 93 33.3
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 9.9e-06 53.5 95 31.6
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 9.9e-06 53.5 77 33.8
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 9.9e-06 53.5 88 31.8
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 9.9e-06 53.5 94 33.0


User provided reference genes

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