Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 1.6e-61 239.2 120 100.0
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 2.6e-59 231.9 117 99.1
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 5.5e-57 224.2 117 93.2
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.5e-54 215.3 117 86.3
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 6.5e-50 200.7 117 79.5
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.1e-47 191.0 117 77.8
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 1.1e-41 173.3 117 71.8
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.6e-40 168.3 117 68.4
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.8e-39 166.0 119 68.1
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.1e-36 156.8 119 63.9
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 4.1e-36 154.8 119 61.3
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 3.5e-35 151.8 119 61.3
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 7.7e-35 150.6 119 60.5
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 3.8e-34 148.3 119 58.8
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 6.5e-34 147.5 119 56.3
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 8.5e-34 147.1 119 58.8
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 2.1e-32 142.5 115 55.7
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 2.1e-32 142.5 119 57.1
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.7e-32 142.1 119 56.3
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.7e-32 142.1 119 56.3
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 2.7e-32 142.1 118 62.7
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 3.6e-32 141.7 119 57.1
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 6.1e-32 141.0 120 57.5
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.4e-31 139.8 119 56.3
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 3.0e-31 138.7 119 54.6
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 3.0e-31 138.7 119 57.1
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.9e-31 138.3 119 57.1
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 8.8e-31 137.1 134 58.2
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.5e-30 136.3 119 57.1
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.5e-30 136.3 118 60.2
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 2.0e-30 136.0 119 56.3
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 2.0e-30 136.0 120 56.7
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 2.6e-30 135.6 121 57.0
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.6e-30 135.6 118 59.3
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 3.3e-30 135.2 102 59.8
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 3.3e-30 135.2 120 54.2
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 3.3e-30 135.2 102 59.8
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.7e-30 134.4 119 56.3
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 5.7e-30 134.4 118 56.8
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 5.7e-30 134.4 118 56.8
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 7.4e-30 134.0 113 56.6
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 7.4e-30 134.0 119 52.9
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 9.7e-30 133.7 119 52.1
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 9.7e-30 133.7 113 57.5
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 1.7e-29 132.9 119 52.9
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 2.2e-29 132.5 119 52.9
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 2.2e-29 132.5 120 56.7
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 2.8e-29 132.1 120 57.5
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 2.8e-29 132.1 117 59.8
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 3.7e-29 131.7 119 52.1
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 4.8e-29 131.3 119 51.3
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 4.8e-29 131.3 121 54.5
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 4.8e-29 131.3 119 48.7
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 6.3e-29 131.0 120 53.3
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 6.3e-29 131.0 119 55.5
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 6.3e-29 131.0 121 56.2
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 6.3e-29 131.0 108 60.2
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 8.2e-29 130.6 117 50.4
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 1.1e-28 130.2 121 49.6
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 1.1e-28 130.2 121 55.4
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 1.1e-28 130.2 120 52.5
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 1.1e-28 130.2 119 52.9
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 1.4e-28 129.8 120 52.5
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.4e-28 129.8 121 52.9
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 1.8e-28 129.4 120 52.5
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.4e-28 129.0 118 55.1
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 2.4e-28 129.0 119 47.9
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 3.1e-28 128.6 122 56.6
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 4.1e-28 128.3 119 51.3
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 5.3e-28 127.9 120 50.8
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 7.0e-28 127.5 120 51.7
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 7.0e-28 127.5 119 51.3
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 7.0e-28 127.5 120 50.8
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 7.0e-28 127.5 121 56.2
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 9.1e-28 127.1 111 54.1
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 1.2e-27 126.7 119 49.6
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 2.0e-27 125.9 120 53.3
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 2.0e-27 125.9 159 42.1
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 2.6e-27 125.6 120 52.5
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.6e-27 125.6 118 50.8
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.6e-27 125.6 118 50.8
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 4.5e-27 124.8 137 47.4
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.0e-26 123.6 118 50.8
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 1.7e-26 122.9 119 49.6
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 1.7e-26 122.9 115 48.7
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.2e-26 122.5 121 49.6
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.2e-26 122.5 121 49.6
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 2.9e-26 122.1 120 50.8
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 5.0e-26 121.3 120 54.2
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 1.5e-25 119.8 129 48.1
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 1.5e-25 119.8 129 48.1
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.5e-25 119.8 119 47.9
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 1.5e-25 119.8 119 47.9
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 2.5e-25 119.0 122 49.2
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 3.2e-25 118.6 115 48.7
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 3.2e-25 118.6 115 48.7
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 3.2e-25 118.6 119 47.9
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 7.2e-25 117.5 119 47.9
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 7.2e-25 117.5 122 50.0
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.2e-24 116.7 111 55.0
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 2.7e-24 115.5 119 45.4
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 2.7e-24 115.5 129 47.3
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 2.7e-24 115.5 119 45.4
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.7e-24 115.5 119 47.9
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 3.6e-24 115.2 116 50.0
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 8.0e-24 114.0 119 44.5
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.4e-23 113.2 116 50.0
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.0e-23 112.1 118 49.2
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 3.0e-23 112.1 124 47.6
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 5.2e-23 111.3 121 49.6
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 6.7e-23 110.9 121 48.8
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 1.5e-22 109.8 121 47.1
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 2.0e-22 109.4 120 46.7
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.6e-22 109.0 121 47.9
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 3.3e-22 108.6 121 47.9
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 7.5e-22 107.5 78 60.3
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 3.7e-21 105.1 117 48.7
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.8e-21 104.8 114 48.2
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 4.8e-21 104.8 141 43.3
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 4.8e-21 104.8 120 44.2
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 4.1e-20 101.7 152 35.5
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 1.2e-19 100.1 103 50.5
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.0e-19 99.4 105 49.5
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 1.3e-18 96.7 156 36.5
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 3.8e-18 95.1 119 40.3
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 3.6e-16 88.6 81 54.3
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 4.7e-16 88.2 80 52.5
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 2.0e-14 82.8 119 40.3
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 5.7e-14 81.3 96 46.9
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 4.8e-13 78.2 74 51.4
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.1e-12 77.0 74 51.4
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.1e-12 77.0 74 51.4
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 1.4e-12 76.6 103 38.8
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 5.4e-12 74.7 78 48.7
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 4.0e-07 58.5 46 58.7
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 8.9e-07 57.4 58 46.6
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 7.5e-06 54.3 83 33.7


User provided reference genes

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