Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g027930 Solanum pennellii HOM05D000639 ORTHO05D028406 1.2e-135 486.5 244 100.0
Solyc12g099560.2 Solanum lycopersicum HOM05D000639 ORTHO05D004019 5.7e-85 318.2 165 98.8
PGSC0003DMG400004710 Solanum tuberosum HOM05D000639 ORTHO05D004019 2.7e-79 299.3 165 95.2
CAN.G484.33 Capsicum annuum HOM05D000639 ORTHO05D004019 3.0e-62 242.7 169 79.9
Nitab4.5_0003466g0120 Nicotiana tabacum HOM05D000639 ORTHO05D004019 5.2e-62 241.9 168 76.8
Nitab4.5_0000570g0130 Nicotiana tabacum HOM05D000639 ORTHO05D004019 1.1e-59 234.2 168 73.8
Peaxi162Scf00086g00431 Petunia axillaris HOM05D000639 ORTHO05D004019 5.9e-58 228.4 168 73.8
Solyc05g054240.3 Solanum lycopersicum HOM05D000639 ORTHO05D004019 7.2e-56 221.5 168 69.6
Sopen05g032730 Solanum pennellii HOM05D000639 ORTHO05D004019 7.2e-56 221.5 168 69.0
CAN.G449.33 Capsicum annuum HOM05D000639 ORTHO05D004019 6.7e-54 214.9 168 66.7
CSS0043025 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D004019 1.6e-50 203.8 168 63.7
TWI73G0330 Tripterygium wilfordii HOM05D000639 ORTHO05D004019 1.3e-49 200.7 167 65.9
Atru.chr4.2839 Acer truncatum HOM05D000639 ORTHO05D004019 3.8e-49 199.1 167 63.5
MSTRG.3915 Avicennia marina HOM05D000639 ORTHO05D004019 3.8e-49 199.1 169 67.5
Thecc.04G284900 Theobroma cacao HOM05D000639 ORTHO05D004019 5.0e-49 198.7 163 64.4
Cpa.g.sc16.172 Carica papaya HOM05D000639 ORTHO05D004019 1.1e-48 197.6 175 61.1
GSVIVG01017761001 Vitis vinifera HOM05D000639 ORTHO05D004019 2.5e-48 196.4 164 65.9
CSS0034707 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D004019 3.2e-48 196.1 168 62.5
Nitab4.5_0001233g0100 Nicotiana tabacum HOM05D000639 ORTHO05D004019 4.2e-48 195.7 165 66.7
Lj6C676T4 Lonicera japonica HOM05D000639 ORTHO05D004019 1.2e-47 194.1 163 63.8
Potri.008G222700 Populus trichocarpa HOM05D000639 ORTHO05D004019 1.6e-47 193.7 173 59.5
Ciclev10004703m.g Citrus clementina HOM05D000639 ORTHO05D004019 8.0e-47 191.4 167 62.3
Sed0022843 Sechium edule HOM05D000639 ORTHO05D004019 8.0e-47 191.4 164 63.4
Cfa015385 Carpinus fangiana HOM05D000639 ORTHO05D004019 1.0e-46 191.0 167 62.3
Prupe.1G136600 Prunus persica HOM05D000639 ORTHO05D004019 1.0e-46 191.0 166 62.7
Potri.010G014600 Populus trichocarpa HOM05D000639 ORTHO05D004019 1.8e-46 190.3 173 57.2
Rhsim04G0222300 Rhododendron simsii HOM05D000639 ORTHO05D004019 1.8e-46 190.3 181 59.7
SalBow2G1467 Salvia bowleyana HOM05D000639 ORTHO05D004019 2.3e-46 189.9 190 58.9
TWI09G1119 Tripterygium wilfordii HOM05D000639 ORTHO05D004019 2.3e-46 189.9 167 61.7
Gohir.A09G062500 Gossypium hirsutum HOM05D000639 ORTHO05D004019 4.0e-46 189.1 163 63.8
COL.COLO4_13868 Corchorus olitorius HOM05D000639 ORTHO05D004019 5.2e-46 188.7 167 62.9
Duzib151G0063 Durio zibethinus HOM05D000639 ORTHO05D004019 5.2e-46 188.7 163 61.3
Hma1.2p1_0078F.1_g040530 Hydrangea macrophylla HOM05D000639 ORTHO05D004019 5.2e-46 188.7 167 62.3
Nitab4.5_0001904g0120 Nicotiana tabacum HOM05D000639 ORTHO05D004019 5.2e-46 188.7 165 66.1
Actinidia01464 Actinidia chinensis HOM05D000639 ORTHO05D004019 8.8e-46 188.0 167 61.1
Gorai.006G262700 Gossypium raimondii HOM05D000639 ORTHO05D004019 8.8e-46 188.0 166 61.4
EL10Ac3g06602 Beta vulgaris HOM05D000639 ORTHO05D004019 1.2e-45 187.6 166 58.4
Haze_01200 Corylus avellana HOM05D000639 ORTHO05D004019 1.2e-45 187.6 168 61.3
Nn4g25839 Nelumbo nucifera HOM05D000639 ORTHO05D004019 1.2e-45 187.6 171 59.1
Duzib212G0808 Durio zibethinus HOM05D000639 ORTHO05D004019 1.5e-45 187.2 163 62.0
MD13G1168500 Malus domestica HOM05D000639 ORTHO05D004019 1.5e-45 187.2 167 60.5
Actinidia40256 Actinidia chinensis HOM05D000639 ORTHO05D004019 2.0e-45 186.8 166 59.0
Gohir.D09G239900 Gossypium hirsutum HOM05D000639 ORTHO05D004019 2.0e-45 186.8 166 61.4
TAR362G0702 Trochodendron aralioides HOM05D000639 ORTHO05D004019 2.0e-45 186.8 168 60.1
Hma1.2p1_2670F.1_g326610 Hydrangea macrophylla HOM05D000639 ORTHO05D004019 2.6e-45 186.4 169 59.2
Migut.G00162 Erythranthe guttata HOM05D000639 ORTHO05D004019 3.4e-45 186.0 169 64.5
QL06p008928 Quercus lobata HOM05D000639 ORTHO05D004019 3.4e-45 186.0 167 58.7
MSTRG.10095 Avicennia marina HOM05D000639 ORTHO05D004019 5.7e-45 185.3 163 64.4
CiPaw.02G082800 Carya illinoinensis HOM05D000639 ORTHO05D004019 5.7e-45 185.3 166 62.0
vmacro08153 Vaccinium macrocarpon HOM05D000639 ORTHO05D004019 5.7e-45 185.3 181 56.9
CANSAT78G0502 Cannabis sativa HOM05D000639 ORTHO05D004019 9.8e-45 184.5 167 57.5
ClCG06G005130 Citrullus lanatus HOM05D000639 ORTHO05D004019 3.7e-44 182.6 166 60.8
Gohir.A09G239000 Gossypium hirsutum HOM05D000639 ORTHO05D004019 3.7e-44 182.6 166 60.2
Gorai.011G190400 Gossypium raimondii HOM05D000639 ORTHO05D004019 3.7e-44 182.6 164 59.8
CsaV3_6G017170 Cucumis sativus L. HOM05D000639 ORTHO05D004019 4.8e-44 182.2 166 60.2
Gohir.D10G170500 Gossypium hirsutum HOM05D000639 ORTHO05D004019 4.8e-44 182.2 165 60.6
MD16G1168900 Malus domestica HOM05D000639 ORTHO05D004019 6.3e-44 181.8 167 60.5
Gohir.A10G164200 Gossypium hirsutum HOM05D000639 ORTHO05D004019 1.1e-43 181.0 164 60.4
MELO3C021330.2 Cucumis melo HOM05D000639 ORTHO05D004019 1.8e-43 180.3 166 60.2
Oeu029702.2 Olea europaea HOM05D000639 ORTHO05D004019 1.8e-43 180.3 199 53.3
Gorai.006G076000 Gossypium raimondii HOM05D000639 ORTHO05D004019 2.4e-43 179.9 138 67.4
Gohir.D09G061400 Gossypium hirsutum HOM05D000639 ORTHO05D004019 5.4e-43 178.7 160 60.0
Hund24894 Selenicereus undatus HOM05D000639 ORTHO05D004019 5.4e-43 178.7 167 57.5
TAR365G0782 Trochodendron aralioides HOM05D000639 ORTHO05D004019 9.1e-43 177.9 166 60.2
SGA_v2.0_scaffold147G36295 Striga asiatica HOM05D000639 ORTHO05D004019 1.6e-42 177.2 163 60.7
PGR031G2129 Punica granatum HOM05D000639 ORTHO05D004019 2.0e-42 176.8 165 58.8
RcHm_v2.0_Chr4g0422261 Rosa chinensis HOM05D000639 ORTHO05D004019 5.9e-42 175.3 167 58.7
DCAR_027075 Daucus carota HOM05D000639 ORTHO05D004019 2.3e-41 173.3 164 61.6
Lj6C675G15 Lonicera japonica HOM05D000639 ORTHO05D004019 2.9e-41 172.9 163 60.7
HanXRQChr13g0411281 Helianthus annuus HOM05D000639 ORTHO05D004019 5.0e-41 172.2 159 57.9
THA.LOC104818926 Tarenaya hassleriana HOM05D000639 ORTHO05D004019 5.0e-41 172.2 163 58.9
FAN17G3001 Fragaria x ananassa HOM05D000639 ORTHO05D004019 6.6e-41 171.8 169 58.0
Lsat_1_v5_gn_5_53081 Lactuca sativa HOM05D000639 ORTHO05D004019 2.5e-40 169.9 167 54.5
Sp2g19400 Schrenkiella parvula HOM05D000639 ORTHO05D004019 2.5e-40 169.9 163 57.7
ECA240G4511 Erigeron canadensis HOM05D000639 ORTHO05D004019 9.5e-40 167.9 169 56.2
Thhalv10003986m.g Eutrema salsugineum HOM05D000639 ORTHO05D004019 1.2e-39 167.5 163 57.1
Sc19g0005320 Simmondsia chinensis HOM05D000639 ORTHO05D004019 1.6e-39 167.2 163 54.6
HanXRQChr03g0080961 Helianthus annuus HOM05D000639 ORTHO05D004019 2.8e-39 166.4 159 55.3
arahy.Tifrunner.gnm1.ann1.KA48HN Arachis hypogaea HOM05D000639 ORTHO05D004019 3.6e-39 166.0 174 56.3
FvH4_4g18050 Fragaria vesca HOM05D000639 ORTHO05D004019 3.6e-39 166.0 167 57.5
Aqoxy2G02982 Aquilegia oxysepala HOM05D000639 ORTHO05D004019 4.7e-39 165.6 167 55.7
Nn3g21443 Nelumbo nucifera HOM05D000639 ORTHO05D004019 4.7e-39 165.6 169 54.4
AL3G18100 Arabidopsis lyrata HOM05D000639 ORTHO05D004019 8.0e-39 164.9 160 53.1
arahy.Tifrunner.gnm1.ann1.LR2V9P Arachis hypogaea HOM05D000639 ORTHO05D004019 3.0e-38 162.9 174 55.2
CARHR081540 Cardamine hirsuta HOM05D000639 ORTHO05D004019 3.0e-38 162.9 163 54.6
Glyma.17G026500 Glycine max HOM05D000639 ORTHO05D004019 3.0e-38 162.9 165 55.8
THA.LOC104802688 Tarenaya hassleriana HOM05D000639 ORTHO05D004019 3.0e-38 162.9 162 56.2
Lj3C819G5 Lonicera japonica HOM05D000639 ORTHO05D004019 5.2e-38 162.2 163 55.2
Lalb_Chr13g0303571 Lupinus albus HOM05D000639 ORTHO05D004019 5.2e-38 162.2 172 55.2
VMungo1309G0809 Vigna mungo HOM05D000639 ORTHO05D004019 1.2e-37 161.0 169 57.4
Lj3C817G11 Lonicera japonica HOM05D000639 ORTHO05D004019 1.5e-37 160.6 163 54.6
Dinv44380 Davidia involucrata HOM05D000639 ORTHO05D004019 2.0e-37 160.2 166 54.8
Glyma.15G148200 Glycine max HOM05D000639 ORTHO05D004019 2.0e-37 160.2 167 56.9
Aa31LG5G17500 Aethionema arabicum HOM05D000639 ORTHO05D004019 2.6e-37 159.8 160 52.5
Carub.0003s0645 Capsella rubella HOM05D000639 ORTHO05D004019 2.6e-37 159.8 163 53.4
PSO210G5853 Papaver somniferum HOM05D000639 ORTHO05D004019 2.6e-37 159.8 171 49.1
unitig_748.g8732 Utricularia gibba HOM05D000639 ORTHO05D004019 2.6e-37 159.8 165 55.2
Lalb_Chr12g0196591 Lupinus albus HOM05D000639 ORTHO05D004019 3.4e-37 159.5 172 53.5
AT3G06930 Arabidopsis thaliana HOM05D000639 ORTHO05D004019 4.4e-37 159.1 163 52.8
Actinidia14303 Actinidia chinensis HOM05D000639 ORTHO05D004019 5.7e-37 158.7 186 50.5
CARHR286220 Cardamine hirsuta HOM05D000639 ORTHO05D004019 5.7e-37 158.7 160 55.6
Eucgr.B01318 Eucalyptus grandis HOM05D000639 ORTHO05D004019 5.7e-37 158.7 172 55.8
Dinv29742 Davidia involucrata HOM05D000714 ORTHO05D000544 7.5e-37 158.3 166 53.6
Thhalv10020486m.g Eutrema salsugineum HOM05D000639 ORTHO05D004019 7.5e-37 158.3 163 52.1
Carub.0008s0884 Capsella rubella HOM05D000639 ORTHO05D004019 1.3e-36 157.5 162 55.6
BolC7t44488H Brassica oleracea HOM05D000639 ORTHO05D004019 1.7e-36 157.1 163 54.0
Sp3g05880 Schrenkiella parvula HOM05D000639 ORTHO05D004019 2.2e-36 156.8 163 52.1
AL8G22390 Arabidopsis lyrata HOM05D000639 ORTHO05D004019 2.8e-36 156.4 165 54.5
C07p39650 Brassica napus HOM05D000639 ORTHO05D004019 2.8e-36 156.4 163 54.0
FAN12G1449 Fragaria x ananassa HOM05D000639 ORTHO05D004019 2.8e-36 156.4 160 56.9
Phvul.003G105500 Phaseolus vulgaris HOM05D000639 ORTHO05D004019 3.7e-36 156.0 168 54.8
AT5G49020 Arabidopsis thaliana HOM05D000639 ORTHO05D004019 1.4e-35 154.1 167 53.9
A06p38610 Brassica napus HOM05D000639 ORTHO05D004019 2.4e-35 153.3 160 54.4
BraA06t26776Z Brassica rapa HOM05D000639 ORTHO05D004019 2.4e-35 153.3 160 54.4
Ca_28415_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 3.1e-35 152.9 165 52.1
Medtr2g436780 Medicago truncatula HOM05D000639 ORTHO05D004019 4.1e-35 152.5 175 53.7
C02p57000 Brassica napus HOM05D000639 ORTHO05D004019 5.4e-35 152.1 163 51.5
BolC2t11770H Brassica oleracea HOM05D000639 ORTHO05D004019 5.4e-35 152.1 163 51.5
Glyma.09G044700 Glycine max HOM05D000639 ORTHO05D004019 5.4e-35 152.1 169 53.8
TPR.G13846 Trifolium pratense HOM05D000639 ORTHO05D004019 5.4e-35 152.1 168 52.4
BraA02t08766Z Brassica rapa HOM05D000639 ORTHO05D004019 7.0e-35 151.8 163 50.9
Psat0s3456g0080 Pisum sativum HOM05D000639 ORTHO05D004019 7.0e-35 151.8 163 55.8
MBI19_g29220_MAGBIO Magnolia biondii HOM05D000639 ORTHO05D004019 9.2e-35 151.4 179 54.7
Glyma.07G247300 Glycine max HOM05D000639 ORTHO05D004019 1.2e-34 151.0 165 54.5
BcaC03g17691 Brassica carinata HOM05D000639 ORTHO05D004019 1.6e-34 150.6 163 51.5
Ca_21493_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 1.6e-34 150.6 163 55.2
PSO302G0100 Papaver somniferum HOM05D000639 ORTHO05D004019 2.7e-34 149.8 172 46.5
BcaB07g34210 Brassica carinata HOM05D000639 ORTHO05D004019 3.5e-34 149.4 164 51.8
A02p37840 Brassica napus HOM05D000639 ORTHO05D004019 3.5e-34 149.4 163 51.5
Lj4g0016454 Lotus japonicus HOM05D000639 ORTHO05D004019 4.5e-34 149.1 163 52.1
Cc03_g01920 Coffea canephora HOM05D000639 ORTHO05D004019 5.9e-34 148.7 94 78.7
A05p41240 Brassica napus HOM05D000639 ORTHO05D004019 1.0e-33 147.9 162 50.6
VMungo1215G1558 Vigna mungo HOM05D000639 ORTHO05D004019 1.0e-33 147.9 170 51.8
HanXRQChr09g0240301 Helianthus annuus HOM05D000639 ORTHO05D028406 3.8e-33 146.0 108 66.7
BcaC05g29770 Brassica carinata HOM05D000639 ORTHO05D004019 1.1e-32 144.4 161 51.6
BcaC05g29823 Brassica carinata HOM05D000639 ORTHO05D004019 1.1e-32 144.4 161 49.7
BolC5t34700H Brassica oleracea HOM05D000639 ORTHO05D004019 1.1e-32 144.4 161 49.7
Lj6g0003576 Lotus japonicus HOM05D000639 ORTHO05D004019 1.9e-32 143.7 115 63.5
Oeu027725.1 Olea europaea HOM05D000639 ORTHO05D004019 1.9e-32 143.7 85 83.5
Lalb_Chr15g0083501 Lupinus albus HOM05D000639 ORTHO05D004019 3.3e-32 142.9 162 53.1
C05p60460 Brassica napus HOM05D000639 ORTHO05D004019 5.6e-32 142.1 161 49.7
TPR.G3204 Trifolium pratense HOM05D000639 ORTHO05D004019 1.2e-31 141.0 171 49.1
Medtr4g119900 Medicago truncatula HOM05D000639 ORTHO05D004019 2.1e-31 140.2 167 49.7
BraA05t22847Z Brassica rapa HOM05D000639 ORTHO05D004019 1.4e-30 137.5 162 49.4
CDE08G1566 Ceratophyllum demersum HOM05D000639 ORTHO05D004019 1.4e-30 137.5 179 45.3
CDE02G3502 Ceratophyllum demersum HOM05D000639 ORTHO05D004019 2.0e-29 133.7 179 44.7
CSS0045829 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D028406 9.8e-29 131.3 122 57.4
Zm00001eb330380 Zea mays HOM05D000639 ORTHO05D004019 6.4e-28 128.6 122 58.2
Os07g0671700 Oryza sativa ssp. japonica HOM05D000639 ORTHO05D004019 8.3e-28 128.3 160 50.0
Zm00001eb111180 Zea mays HOM05D000639 ORTHO05D004019 5.4e-27 125.6 163 49.1
C06p30940 Brassica napus HOM05D000517 ORTHO05D019904 1.5e-24 117.5 165 46.1
HPP92_000402 Vanilla planifolia HOM05D000639 ORTHO05D004019 1.5e-24 117.5 166 45.8
Sed0024544 Sechium edule HOM05D000639 ORTHO05D004019 1.9e-24 117.1 93 64.5
ATR0796G199 Amborella trichopoda HOM05D000639 ORTHO05D004019 3.3e-24 116.3 177 41.8
DCAR_023284 Daucus carota HOM05D000639 ORTHO05D004019 1.2e-23 114.4 134 52.2
Sed0016171 Sechium edule HOM05D000639 ORTHO05D004019 5.8e-21 105.5 96 60.4
BcaC01g00537 Brassica carinata HOM05D000639 ORTHO05D004019 4.9e-20 102.4 94 55.3
C03p41410 Brassica napus HOM05D000639 ORTHO05D004019 1.1e-19 101.3 97 53.6
Sc13g0003460 Simmondsia chinensis HOM05D000639 ORTHO05D004019 2.3e-17 93.6 166 38.6
PGSC0003DMG400008452 Solanum tuberosum HOM05D000639 ORTHO05D004019 1.5e-16 90.9 52 86.5
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 1.9e-16 90.5 68 67.6
Pp3c11_14160 Physcomitrium patens HOM05D000639 ORTHO05D004019 1.9e-16 90.5 106 45.3
FAN07G2352 Fragaria x ananassa HOM05D000639 ORTHO05D005322 4.3e-16 89.4 119 47.1
AagrBONN_evm.TU.Sc2ySwM_228.3515 Anthoceros agrestis HOM05D000639 ORTHO05D004019 1.8e-14 84.0 106 48.1
A07p06820 Brassica napus HOM05D000639 ORTHO05D019441 1.8e-14 84.0 64 64.1
BraA07t28472Z Brassica rapa HOM05D000639 ORTHO05D019441 1.8e-14 84.0 64 64.1
Peaxi162Scf00576g00012 Petunia axillaris HOM05D000639 ORTHO05D028406 6.8e-14 82.0 74 60.8
Pp3c1_7870 Physcomitrium patens HOM05D000639 ORTHO05D004019 6.8e-14 82.0 166 36.1
AUR62008114 Chenopodium quinoa HOM05D000639 ORTHO05D004019 8.9e-14 81.6 54 70.4
Actinidia12344 Actinidia chinensis HOM05D003013 ORTHO05D003460 5.8e-13 79.0 62 61.3
Ah.04g164890 Amaranthus hybridus HOM05D000639 ORTHO05D004019 3.7e-12 76.3 43 81.4
SMO118G0363 Selaginella moellendorffii HOM05D000639 ORTHO05D004019 1.1e-11 74.7 47 78.7
Solyc08g022100.1 Solanum lycopersicum HOM05D057616 ORTHO05D051106 1.1e-11 74.7 41 85.4
Actinidia08474 Actinidia chinensis HOM05D000639 ORTHO05D052910 1.7e-09 67.4 45 68.9
CBR_g3614 Chara braunii HOM05D000639 ORTHO05D004019 3.9e-09 66.2 39 79.5
PRCOL_00004311 Prasinoderma coloniale HOM05D000639 ORTHO05D004019 3.1e-06 56.6 36 69.4


User provided reference genes

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