Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 2.9e-76 288.5 145 100.0
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 6.4e-76 287.3 145 99.3
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 1.3e-73 279.6 145 97.9
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.5e-69 266.2 145 92.4
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 6.6e-65 250.8 130 92.3
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 2.5e-64 248.8 145 85.5
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.1e-62 243.4 136 90.4
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 1.0e-57 226.9 145 76.6
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 6.6e-57 224.2 145 75.2
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 6.6e-57 224.2 145 75.2
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 1.9e-56 222.6 145 75.9
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 4.3e-56 221.5 145 74.5
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.2e-55 219.9 144 77.8
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 3.6e-55 218.4 143 72.7
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 6.8e-54 214.2 145 70.3
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 1.5e-53 213.0 145 72.4
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 2.0e-53 212.6 145 73.1
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 2.0e-53 212.6 145 70.3
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 3.4e-53 211.8 145 71.0
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 4.4e-53 211.5 145 70.3
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 5.8e-53 211.1 145 70.3
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 9.9e-53 210.3 145 71.0
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 1.3e-52 209.9 145 71.0
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 2.2e-52 209.1 145 71.0
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.2e-52 209.1 145 71.7
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 2.9e-52 208.8 145 69.7
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 3.8e-52 208.4 145 71.7
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 3.8e-52 208.4 145 69.7
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 4.9e-52 208.0 145 73.1
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 4.9e-52 208.0 145 71.0
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 6.4e-52 207.6 145 70.3
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 6.4e-52 207.6 145 70.3
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 6.4e-52 207.6 145 71.0
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 6.4e-52 207.6 144 70.8
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 8.4e-52 207.2 145 71.7
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.1e-51 206.8 145 69.0
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.4e-51 206.5 145 69.0
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 1.4e-51 206.5 145 68.3
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 1.9e-51 206.1 145 69.0
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.9e-51 206.1 145 71.7
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 4.1e-51 204.9 145 67.6
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 5.4e-51 204.5 145 68.3
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 7.1e-51 204.1 144 69.4
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.2e-50 203.4 152 68.4
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.2e-50 203.4 145 68.3
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 1.2e-50 203.4 145 67.6
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.6e-50 203.0 145 68.3
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.6e-50 203.0 145 67.6
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 2.1e-50 202.6 143 68.5
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 2.7e-50 202.2 145 68.3
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 2.7e-50 202.2 145 66.9
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.5e-50 201.8 145 68.3
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 3.5e-50 201.8 145 69.0
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.6e-50 201.4 128 74.2
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 4.6e-50 201.4 146 69.9
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.0e-49 200.3 145 68.3
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.3e-49 199.9 145 66.2
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.1e-48 196.8 145 64.1
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 7.3e-48 194.1 144 68.1
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 9.6e-48 193.7 145 65.5
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 9.6e-48 193.7 144 67.4
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 1.2e-47 193.4 145 66.9
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 2.1e-47 192.6 145 65.5
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 2.8e-47 192.2 145 67.6
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 3.6e-47 191.8 144 65.3
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 3.6e-47 191.8 148 65.5
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 3.6e-47 191.8 145 64.8
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 4.7e-47 191.4 145 64.1
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 6.2e-47 191.0 145 64.8
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 2.4e-46 189.1 145 65.5
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 5.2e-46 188.0 145 63.4
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 2.6e-45 185.7 144 64.6
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 2.6e-45 185.7 145 65.5
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 3.4e-45 185.3 144 64.6
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 3.4e-45 185.3 144 65.3
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 7.6e-45 184.1 145 64.8
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 7.6e-45 184.1 146 67.8
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 9.9e-45 183.7 145 64.8
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 1.3e-44 183.3 129 69.8
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 1.7e-44 183.0 144 64.6
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 1.7e-44 183.0 144 66.7
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 2.2e-44 182.6 144 63.9
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 3.8e-44 181.8 145 63.4
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 1.1e-43 180.3 145 61.4
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 1.4e-43 179.9 144 63.2
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 1.4e-43 179.9 144 63.2
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.4e-43 179.9 145 62.8
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 1.4e-43 179.9 144 64.6
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.4e-43 179.9 146 64.4
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 5.4e-43 177.9 144 62.5
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 5.4e-43 177.9 144 63.2
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 7.1e-43 177.6 119 70.6
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 1.2e-42 176.8 145 60.0
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.2e-42 176.8 145 60.0
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 1.2e-42 176.8 145 62.8
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 1.6e-42 176.4 146 63.0
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 2.7e-42 175.6 144 62.5
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 2.7e-42 175.6 144 62.5
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.5e-42 175.3 139 66.2
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 4.6e-42 174.9 145 59.3
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 6.0e-42 174.5 144 61.8
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 6.0e-42 174.5 144 63.2
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 7.8e-42 174.1 145 62.8
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 6.6e-41 171.0 146 61.0
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 9.6e-40 167.2 146 59.6
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 1.3e-39 166.8 151 59.6
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.8e-39 165.6 144 61.1
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.6e-39 165.2 144 60.4
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 4.8e-39 164.9 145 55.9
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 1.1e-38 163.7 146 56.8
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 1.4e-38 163.3 145 55.9
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 2.4e-38 162.5 171 50.9
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 9.0e-38 160.6 151 57.6
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 1.2e-37 160.2 144 53.5
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 2.0e-37 159.5 171 49.7
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 3.4e-37 158.7 143 54.5
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 3.4e-37 158.7 143 58.0
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 2.2e-36 156.0 145 53.8
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 2.9e-36 155.6 109 72.5
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 9.3e-35 150.6 117 65.8
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 6.0e-34 147.9 138 55.1
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.9e-33 145.2 147 55.1
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 2.5e-32 142.5 109 64.2
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 3.8e-28 128.6 104 60.6
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.1e-27 127.1 84 72.6
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.0e-25 120.6 126 53.2
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.8e-25 119.8 93 64.5
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 3.9e-25 118.6 141 43.3
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 9.6e-24 114.0 145 48.3
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.8e-23 112.5 153 44.4
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.4e-22 110.2 120 51.7
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 4.2e-19 98.6 87 56.3
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 4.6e-18 95.1 54 75.9
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 2.3e-17 92.8 86 57.0
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 3.9e-17 92.0 157 37.6
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.3e-16 89.0 81 51.9
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 5.3e-14 81.6 61 70.5
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 1.4e-11 73.6 59 66.1
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 1.2e-10 70.5 144 30.6
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 4.6e-10 68.6 61 60.7
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 6.1e-10 68.2 158 31.0
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 7.9e-10 67.8 74 40.5
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 1.4e-09 67.0 43 67.4
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 1.1e-06 57.4 62 48.4
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.1e-06 57.4 60 40.0


User provided reference genes

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