Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g027870 Solanum pennellii HOM05D007064 ORTHO05D008772 8.6e-162 573.5 282 100.0
PGSC0003DMG400003147 Solanum tuberosum HOM05D007064 ORTHO05D008772 1.6e-160 569.3 282 98.6
Solyc03g097130.3 Solanum lycopersicum HOM05D007064 ORTHO05D008772 3.6e-160 568.2 282 99.3
Nitab4.5_0000021g0660 Nicotiana tabacum HOM05D007064 ORTHO05D008772 6.4e-149 530.8 282 90.1
Nitab4.5_0004530g0030 Nicotiana tabacum HOM05D007064 ORTHO05D008772 7.1e-148 527.3 282 90.1
CAN.G1131.22 Capsicum annuum HOM05D007064 ORTHO05D008772 3.0e-146 521.9 282 90.8
Migut.F00087 Erythranthe guttata HOM05D007064 ORTHO05D008772 3.4e-126 455.3 282 79.1
CSS0020222 Camellia sinensis var. sinensis HOM05D007064 ORTHO05D008772 2.7e-123 445.7 282 75.9
CSS0020425 Camellia sinensis var. sinensis HOM05D007064 ORTHO05D008772 2.7e-123 445.7 282 75.9
TAR629G0708 Trochodendron aralioides HOM05D007064 ORTHO05D008772 3.5e-123 445.3 282 75.5
Rhsim03G0222700 Rhododendron simsii HOM05D007064 ORTHO05D008772 6.1e-123 444.5 279 75.6
Cc02_g00210 Coffea canephora HOM05D007064 ORTHO05D008772 1.0e-122 443.7 279 75.6
GSVIVG01024376001 Vitis vinifera HOM05D007064 ORTHO05D008772 6.7e-122 441.0 282 73.4
Nn1g00178 Nelumbo nucifera HOM05D007064 ORTHO05D008772 1.5e-121 439.9 282 73.4
PSO063G1297 Papaver somniferum HOM05D007064 ORTHO05D008772 2.2e-120 436.0 282 73.8
QL09p023233 Quercus lobata HOM05D007064 ORTHO05D008772 1.1e-119 433.7 277 74.4
CiPaw.05G216200 Carya illinoinensis HOM05D007064 ORTHO05D008772 3.1e-119 432.2 282 72.0
Cfa016048 Carpinus fangiana HOM05D007064 ORTHO05D008772 9.0e-119 430.6 282 72.7
SGA_v2.0_scaffold44G16901 Striga asiatica HOM05D007064 ORTHO05D008772 9.0e-119 430.6 281 73.7
FvH4_4g01950 Fragaria vesca HOM05D007064 ORTHO05D008772 1.5e-118 429.9 277 73.6
FAN12G0288 Fragaria x ananassa HOM05D007064 ORTHO05D008772 1.5e-118 429.9 277 73.6
PSO782G0881 Papaver somniferum HOM05D007064 ORTHO05D008772 5.9e-118 427.9 282 73.8
Hma1.2p1_0649F.1_g195260 Hydrangea macrophylla HOM05D007064 ORTHO05D008772 1.0e-117 427.2 278 73.4
Haze_00398 Corylus avellana HOM05D007064 ORTHO05D008772 1.7e-117 426.4 282 72.3
Actinidia34318 Actinidia chinensis HOM05D007064 ORTHO05D008772 2.2e-117 426.0 284 72.2
RcHm_v2.0_Chr4g0388921 Rosa chinensis HOM05D007064 ORTHO05D008772 1.1e-116 423.7 277 72.2
Duzib106G1646 Durio zibethinus HOM05D007064 ORTHO05D008772 1.4e-116 423.3 277 73.3
ECA238G0775 Erigeron canadensis HOM05D007064 ORTHO05D008772 2.5e-116 422.5 282 71.3
Thecc.05G215700 Theobroma cacao HOM05D007064 ORTHO05D008772 4.2e-116 421.8 282 72.3
Ciclev10020357m.g Citrus clementina HOM05D007064 ORTHO05D008772 7.2e-116 421.0 282 71.3
Gohir.A11G303500 Gossypium hirsutum HOM05D007064 ORTHO05D008772 7.2e-116 421.0 282 71.6
MD13G1202900 Malus domestica HOM05D007064 ORTHO05D008772 1.2e-115 420.2 277 72.2
ATR0829G191 Amborella trichopoda HOM05D007064 ORTHO05D008772 4.6e-115 418.3 282 70.2
Sabra19G0062000 Salix brachista HOM05D007064 ORTHO05D008772 4.6e-115 418.3 281 72.6
Sc19g0000100 Simmondsia chinensis HOM05D007064 ORTHO05D008772 6.1e-115 417.9 278 73.4
CsaV3_3G050060 Cucumis sativus L. HOM05D007064 ORTHO05D008772 7.9e-115 417.5 282 72.7
Atru.chr12.1880 Acer truncatum HOM05D007064 ORTHO05D008772 8.8e-114 414.1 282 70.6
Gorai.007G348800 Gossypium raimondii HOM05D007064 ORTHO05D008772 1.5e-113 413.3 282 70.6
TWI60G0820 Tripterygium wilfordii HOM05D007064 ORTHO05D008772 3.3e-113 412.1 282 69.9
Gohir.D11G318800 Gossypium hirsutum HOM05D007064 ORTHO05D008772 4.3e-113 411.8 282 70.6
Lalb_Chr09g0320151 Lupinus albus HOM05D007064 ORTHO05D008772 5.7e-113 411.4 278 71.6
CANSAT78G1989 Cannabis sativa HOM05D007064 ORTHO05D008772 9.7e-113 410.6 281 71.5
Hund09801 Selenicereus undatus HOM05D007064 ORTHO05D000105 9.7e-113 410.6 278 72.7
AUR62028195 Chenopodium quinoa HOM05D007064 ORTHO05D008772 2.2e-112 409.5 282 70.2
LjContig00222g0020502 Lotus japonicus HOM05D007064 ORTHO05D008772 2.8e-112 409.1 282 69.1
arahy.Tifrunner.gnm1.ann1.P291P9 Arachis hypogaea HOM05D007064 ORTHO05D008772 3.7e-112 408.7 278 69.8
VMungo1215G2591 Vigna mungo HOM05D007064 ORTHO05D008772 4.8e-112 408.3 281 71.2
COL.COLO4_15235 Corchorus olitorius HOM05D007064 ORTHO05D008772 8.2e-112 407.5 282 70.6
Ah.04g156400 Amaranthus hybridus HOM05D007064 ORTHO05D008772 1.8e-111 406.4 278 70.1
Lsat_1_v5_gn_2_95061 Lactuca sativa HOM05D007064 ORTHO05D008772 1.8e-111 406.4 274 71.9
HPP92_025673 Vanilla planifolia HOM05D007064 ORTHO05D008772 2.4e-111 406.0 278 68.7
arahy.Tifrunner.gnm1.ann1.EDBW82 Arachis hypogaea HOM05D007064 ORTHO05D008772 4.1e-111 405.2 278 69.1
Phvul.002G040600 Phaseolus vulgaris HOM05D007064 ORTHO05D008772 6.9e-111 404.4 281 70.1
Aqoxy3G02225 Aquilegia oxysepala HOM05D007064 ORTHO05D008772 1.2e-110 403.7 282 69.1
EL10Ac3g05060 Beta vulgaris HOM05D007064 ORTHO05D008772 1.5e-110 403.3 284 69.7
Sed0013285 Sechium edule HOM05D007064 ORTHO05D008772 3.4e-110 402.1 282 70.6
HanXRQChr14g0451581 Helianthus annuus HOM05D007064 ORTHO05D008772 5.9e-110 401.4 282 67.7
Medtr5g006230 Medicago truncatula HOM05D007064 ORTHO05D008772 6.5e-109 397.9 278 69.8
TPR.G37970 Trifolium pratense HOM05D007064 ORTHO05D008772 6.5e-109 397.9 278 69.4
SalBow4G1678 Salvia bowleyana HOM05D007064 ORTHO05D008772 1.1e-108 397.1 283 69.3
Glyma.11G009700 Glycine max HOM05D007064 ORTHO05D008772 1.4e-108 396.7 281 68.0
SalBow4G1574 Salvia bowleyana HOM05D007064 ORTHO05D008772 3.2e-108 395.6 283 68.9
Ca_24438_v3 Cicer arietinum L. HOM05D007064 ORTHO05D008772 1.2e-107 393.7 279 68.8
CDE11G0292 Ceratophyllum demersum HOM05D007064 ORTHO05D008772 3.6e-107 392.1 278 68.0
Zm00001eb187800 Zea mays HOM05D007064 ORTHO05D008772 7.9e-107 391.0 278 67.6
Eucgr.K00080 Eucalyptus grandis HOM05D007064 ORTHO05D008772 3.0e-106 389.0 270 68.1
Os02g0694800 Oryza sativa ssp. japonica HOM05D007064 ORTHO05D008772 1.5e-105 386.7 278 68.3
Peaxi162Scf00516g00675 Petunia axillaris HOM05D007064 ORTHO05D008772 7.4e-105 384.4 281 70.8
TWI60G1094 Tripterygium wilfordii HOM05D007064 ORTHO05D008772 1.7e-104 383.3 258 71.7
BolC2t06775H Brassica oleracea HOM05D007064 ORTHO05D008772 2.8e-104 382.5 280 68.6
Thhalv10013656m.g Eutrema salsugineum HOM05D007064 ORTHO05D008772 3.7e-104 382.1 280 67.9
BcaC03g18516 Brassica carinata HOM05D007064 ORTHO05D008772 4.8e-104 381.7 280 68.6
C02p08600 Brassica napus HOM05D007064 ORTHO05D008772 4.8e-104 381.7 280 68.6
AL6G27830 Arabidopsis lyrata HOM05D007064 ORTHO05D008772 6.3e-104 381.3 280 68.2
AT5G16810 Arabidopsis thaliana HOM05D007064 ORTHO05D008772 1.4e-103 380.2 280 68.2
ClCG09G013090 Citrullus lanatus HOM05D007064 ORTHO05D008772 2.4e-103 379.4 258 72.9
Sp6g27320 Schrenkiella parvula HOM05D007064 ORTHO05D008772 4.1e-103 378.6 280 67.5
Carub.0006s1503 Capsella rubella HOM05D007064 ORTHO05D008772 9.1e-103 377.5 280 67.5
THA.LOC104820893 Tarenaya hassleriana HOM05D007064 ORTHO05D008772 2.2e-101 372.9 299 63.9
AUR62002078 Chenopodium quinoa HOM05D007064 ORTHO05D008772 1.5e-100 370.2 282 65.2
BcaNung04953 Brassica carinata HOM05D007064 ORTHO05D008772 2.3e-98 362.8 280 65.7
BraA02t05344Z Brassica rapa HOM05D007064 ORTHO05D008772 8.8e-98 360.9 287 65.2
Aa31LG11G12770 Aethionema arabicum HOM05D007064 ORTHO05D008772 9.7e-97 357.5 304 61.2
Lj1A1033T73 Lonicera japonica HOM05D007064 ORTHO05D008772 1.7e-96 356.7 227 74.4
vmacro06523 Vaccinium macrocarpon HOM05D007064 ORTHO05D008772 7.0e-95 351.3 227 74.4
A02p03790 Brassica napus HOM05D007064 ORTHO05D008772 1.2e-94 350.5 288 63.2
SEGI_11081 Sequoiadendron giganteum HOM05D007064 ORTHO05D008772 2.6e-94 349.4 296 58.4
Oeu038089.3 Olea europaea HOM05D007064 ORTHO05D008772 3.5e-94 349.0 379 52.5
Dinv17250 Davidia involucrata HOM05D007064 ORTHO05D008772 4.5e-94 348.6 227 74.9
Glyma.01G233100 Glycine max HOM05D007064 ORTHO05D008772 6.1e-91 338.2 244 68.0
Prupe.1G025200 Prunus persica HOM05D007064 ORTHO05D008772 2.0e-89 333.2 228 70.2
MELO3C003312.2 Cucumis melo HOM05D007064 ORTHO05D008772 1.1e-87 327.4 227 71.8
Mapoly0096s0061 Marchantia polymorpha HOM05D007064 ORTHO05D008772 2.1e-83 313.2 302 52.6
Pp3c23_10770 Physcomitrium patens HOM05D007064 ORTHO05D008772 1.4e-82 310.5 308 52.6
Potri.019G050500 Populus trichocarpa HOM05D007064 ORTHO05D008772 8.8e-82 307.8 211 70.6
Psat2g189080 Pisum sativum HOM05D007064 ORTHO05D008772 1.5e-81 307.0 227 68.3
Manes.09G127400 Manihot esculenta HOM05D007064 ORTHO05D008772 1.8e-74 283.5 227 64.8
CARHR196350 Cardamine hirsuta HOM05D007064 ORTHO05D008772 5.4e-55 218.8 186 59.7
AagrBONN_evm.TU.Sc2ySwM_344.2887 Anthoceros agrestis HOM05D007064 ORTHO05D008772 4.4e-49 199.1 230 46.5
CBR_g8898 Chara braunii HOM05D007064 ORTHO05D008772 6.2e-43 178.7 123 68.3
SMO343G0012 Selaginella moellendorffii HOM05D007064 ORTHO05D008772 3.1e-42 176.4 287 40.4
Psat0s4094g0040 Pisum sativum HOM05D007064 ORTHO05D008772 1.2e-38 164.5 106 71.7
Oeu043948.1 Olea europaea HOM05D007064 ORTHO05D008772 4.3e-28 129.4 82 76.8
Cpa.g.sc43.98 Carica papaya HOM05D007064 ORTHO05D008772 6.9e-26 122.1 72 77.8
CBR_g8900 Chara braunii HOM05D007064 ORTHO05D000002 3.7e-19 99.8 112 46.4
Lj1A1033G66 Lonicera japonica HOM05D007064 ORTHO05D008772 6.9e-18 95.5 55 80.0
HanXRQChr01g0005821 Helianthus annuus HOM05D007064 ORTHO05D008772 5.8e-17 92.4 70 55.7
TPR.G40530 Trifolium pratense HOM05D007064 ORTHO05D008772 6.5e-16 89.0 51 74.5
PRCOL_00004348 Prasinoderma coloniale HOM05D007064 ORTHO05D008772 5.7e-12 75.9 282 26.2
CBR_g6359 Chara braunii HOM05D007064 ORTHO05D008772 1.8e-10 70.9 96 39.6
CDE09G1163 Ceratophyllum demersum HOM05D002406 ORTHO05D007964 2.6e-09 67.0 259 26.3
Duzib251G0875 Durio zibethinus HOM05D002406 ORTHO05D007964 4.5e-09 66.2 272 26.8
Pp3c10_6850 Physcomitrium patens HOM05D002406 ORTHO05D006947 7.6e-09 65.5 275 26.2
Glyma.02G100000 Glycine max HOM05D002406 ORTHO05D007964 1.0e-08 65.1 271 25.1
SGA_v2.0_scaffold14G06823 Striga asiatica HOM05D002406 ORTHO05D007964 1.0e-08 65.1 263 27.0
CsaV3_5G025330 Cucumis sativus L. HOM05D002406 ORTHO05D007964 1.3e-08 64.7 263 26.6
CiPaw.15G003700 Carya illinoinensis HOM05D002406 ORTHO05D007964 1.7e-08 64.3 273 26.0
MBI13_g34060_MAGBIO Magnolia biondii HOM05D002406 ORTHO05D007964 2.2e-08 63.9 258 26.4
COL.COLO4_07869 Corchorus olitorius HOM05D002406 ORTHO05D007964 2.9e-08 63.5 266 25.9
TAR371G0458 Trochodendron aralioides HOM05D002406 ORTHO05D007964 3.8e-08 63.2 256 26.6
HanXRQChr12g0364801 Helianthus annuus HOM05D002406 ORTHO05D007964 5.0e-08 62.8 274 25.9
Nn4g23734 Nelumbo nucifera HOM05D002406 ORTHO05D007964 5.0e-08 62.8 270 25.2
MELO3C002949.2 Cucumis melo HOM05D002406 ORTHO05D007964 6.5e-08 62.4 263 25.9
Glyma.01G087900 Glycine max HOM05D002406 ORTHO05D007964 6.5e-08 62.4 271 24.4
TAR629G2259 Trochodendron aralioides HOM05D002406 ORTHO05D007964 6.5e-08 62.4 256 27.0
ClCG03G009900 Citrullus lanatus HOM05D002406 ORTHO05D007964 8.4e-08 62.0 263 25.9
Atru.chr11.1356 Acer truncatum HOM05D002406 ORTHO05D007964 1.1e-07 61.6 263 27.0
Eucgr.G02347 Eucalyptus grandis HOM05D002406 ORTHO05D007964 1.1e-07 61.6 263 27.4
MCO05G602 Micromonas commoda HOM05D007064 ORTHO05D008772 1.4e-07 61.2 203 27.1
ATR0681G159 Amborella trichopoda HOM05D002406 ORTHO05D007964 1.9e-07 60.8 261 25.3
Lsat_1_v5_gn_8_38401 Lactuca sativa HOM05D002406 ORTHO05D007964 1.9e-07 60.8 264 26.9
Sed0011685 Sechium edule HOM05D002406 ORTHO05D007964 1.9e-07 60.8 259 24.3
EL10Ac6g14494 Beta vulgaris HOM05D002406 ORTHO05D007964 2.5e-07 60.5 258 25.6
QL01p045302 Quercus lobata HOM05D002406 ORTHO05D007964 2.5e-07 60.5 273 26.7
TWI31G1069 Tripterygium wilfordii HOM05D002406 ORTHO05D007964 2.5e-07 60.5 278 25.2
Hund25103 Selenicereus undatus HOM05D002406 ORTHO05D007964 3.2e-07 60.1 254 24.8
PGR119G0491 Punica granatum HOM05D002406 ORTHO05D007964 4.2e-07 59.7 267 26.2
Migut.K01266 Erythranthe guttata HOM05D002406 ORTHO05D007964 5.5e-07 59.3 265 25.7
Gorai.008G183200 Gossypium raimondii HOM05D002406 ORTHO05D007964 5.5e-07 59.3 272 25.7
Ciclev10031094m.g Citrus clementina HOM05D002406 ORTHO05D007964 7.2e-07 58.9 264 26.1
ECA233G4417 Erigeron canadensis HOM05D002406 ORTHO05D007964 7.2e-07 58.9 264 25.8
Gohir.D12G170600 Gossypium hirsutum HOM05D002406 ORTHO05D007964 1.2e-06 58.2 272 25.7
Lj3A1020T56 Lonicera japonica HOM05D002406 ORTHO05D007964 1.2e-06 58.2 273 26.0
Thecc.02G360900 Theobroma cacao HOM05D002406 ORTHO05D007964 1.2e-06 58.2 272 25.0
GSVIVG01011952001 Vitis vinifera HOM05D002406 ORTHO05D007964 1.6e-06 57.8 272 25.0
CSS0033832 Camellia sinensis var. sinensis HOM05D002406 ORTHO05D007964 2.1e-06 57.4 260 25.0
CANSAT64G2221 Cannabis sativa HOM05D002406 ORTHO05D007964 2.7e-06 57.0 270 25.2
Oeu022120.1 Olea europaea HOM05D002406 ORTHO05D007964 2.7e-06 57.0 263 26.2
HPP92_009835 Vanilla planifolia HOM05D002406 ORTHO05D007964 2.7e-06 57.0 260 24.6
Cpa.g.sc43.97 Carica papaya HOM05D007064 ORTHO05D008772 3.5e-06 56.6 38 65.8
Lj2g0019756 Lotus japonicus HOM05D002406 ORTHO05D007964 3.5e-06 56.6 265 25.7
Lalb_Chr04g0254921 Lupinus albus HOM05D002406 ORTHO05D007964 3.5e-06 56.6 265 25.7
THA.LOC104808195 Tarenaya hassleriana HOM05D002406 ORTHO05D007964 3.5e-06 56.6 259 25.5
AUR62002921 Chenopodium quinoa HOM05D002406 ORTHO05D007964 4.6e-06 56.2 257 24.9
Haze_17442 Corylus avellana HOM05D002406 ORTHO05D007964 4.6e-06 56.2 262 26.7
Pp3c26_5140 Physcomitrium patens HOM05D002406 ORTHO05D007964 4.6e-06 56.2 254 24.0
Rhsim09G0111900 Rhododendron simsii HOM05D002406 ORTHO05D007964 4.6e-06 56.2 262 26.0
Ca_05088_v3 Cicer arietinum L. HOM05D002406 ORTHO05D007964 6.1e-06 55.8 265 25.7
vmacro06524 Vaccinium macrocarpon HOM05D007064 ORTHO05D008772 6.1e-06 55.8 33 78.8
Aqoxy3G03911 Aquilegia oxysepala HOM05D002406 ORTHO05D007964 7.9e-06 55.5 262 26.3
Cc11_g10600 Coffea canephora HOM05D002406 ORTHO05D007964 7.9e-06 55.5 273 24.2
PSO063G1488 Papaver somniferum HOM05D002406 ORTHO05D007964 7.9e-06 55.5 263 25.5
PSO782G1356 Papaver somniferum HOM05D002406 ORTHO05D007964 7.9e-06 55.5 263 25.5


User provided reference genes

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