Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 2.0e-35 151.8 69 100.0
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 5.4e-09 63.9 57 49.1
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 9.3e-09 63.2 49 51.0
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 9.3e-09 63.2 49 51.0
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 2.7e-08 61.6 58 48.3
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 4.6e-08 60.8 41 51.2
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 4.6e-08 60.8 54 50.0
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 7.9e-08 60.1 35 60.0
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.0e-07 59.7 41 53.7
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 1.0e-07 59.7 35 57.1
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.0e-07 59.7 35 60.0
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.3e-07 58.5 60 40.0
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.0e-07 58.2 41 51.2
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.0e-07 58.2 41 51.2
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.0e-07 58.2 41 51.2
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 3.0e-07 58.2 41 53.7
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 3.9e-07 57.8 63 44.4
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 3.9e-07 57.8 39 56.4
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 3.9e-07 57.8 41 53.7
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 3.9e-07 57.8 39 59.0
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 3.9e-07 57.8 39 56.4
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 3.9e-07 57.8 66 39.4
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 3.9e-07 57.8 34 61.8
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 5.1e-07 57.4 41 51.2
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 5.1e-07 57.4 41 51.2
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 5.1e-07 57.4 41 51.2
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 6.7e-07 57.0 38 55.3
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 8.7e-07 56.6 48 47.9
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.1e-06 56.2 35 57.1
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 1.1e-06 56.2 41 51.2
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 1.1e-06 56.2 41 51.2
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 1.5e-06 55.8 56 44.6
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.5e-06 55.8 41 51.2
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 1.9e-06 55.5 35 54.3
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.9e-06 55.5 33 57.6
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.9e-06 55.5 52 40.4
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.9e-06 55.5 52 40.4
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 3.3e-06 54.7 42 47.6
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 3.3e-06 54.7 42 47.6
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 3.3e-06 54.7 35 60.0
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 3.3e-06 54.7 39 53.8
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 3.3e-06 54.7 35 54.3
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 3.3e-06 54.7 55 40.0
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 3.3e-06 54.7 38 50.0
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.3e-06 54.3 35 54.3
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.3e-06 54.3 35 54.3
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 4.3e-06 54.3 35 54.3
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 4.3e-06 54.3 35 57.1
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 4.3e-06 54.3 54 48.1
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 4.3e-06 54.3 35 54.3
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 4.3e-06 54.3 55 41.8
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 4.3e-06 54.3 55 41.8
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.3e-06 54.3 55 40.0
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 5.6e-06 53.9 31 64.5
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 5.6e-06 53.9 31 64.5
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 5.6e-06 53.9 58 41.4
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 5.6e-06 53.9 56 42.9
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 5.6e-06 53.9 39 51.3
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 5.6e-06 53.9 41 48.8
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 7.4e-06 53.5 35 60.0
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 7.4e-06 53.5 48 50.0
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 7.4e-06 53.5 41 46.3
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 7.4e-06 53.5 37 56.8
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 9.6e-06 53.1 36 55.6
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 9.6e-06 53.1 35 54.3
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 9.6e-06 53.1 39 51.3
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 9.6e-06 53.1 40 55.0


User provided reference genes

Program Settings