Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g026220 Solanum pennellii HOM05D001930 ORTHO05D001345 9.1e-37 156.4 78 100.0
Sopen03g026280 Solanum pennellii HOM05D001930 ORTHO05D001345 2.2e-35 151.8 77 97.4
Sopen03g026190 Solanum pennellii HOM05D001930 ORTHO05D001345 1.7e-30 135.6 77 88.3
PGSC0003DMG401011931 Solanum tuberosum HOM05D001930 ORTHO05D001345 6.3e-30 133.7 77 85.7
PGSC0003DMG402011931 Solanum tuberosum HOM05D001930 ORTHO05D001345 6.3e-30 133.7 77 85.7
CAN.G301.5 Capsicum annuum HOM05D001930 ORTHO05D001345 2.0e-28 128.6 77 81.8
Nitab4.5_0003138g0040 Nicotiana tabacum HOM05D001930 ORTHO05D001345 1.0e-24 116.3 77 76.6
Peaxi162Scf01208g00017 Petunia axillaris HOM05D001930 ORTHO05D001345 1.2e-23 112.8 77 71.4
PGSC0003DMG400007777 Solanum tuberosum HOM05D001930 ORTHO05D001345 1.2e-20 102.8 78 70.5
Nn2g13688 Nelumbo nucifera HOM05D001930 ORTHO05D001345 6.8e-16 87.0 75 58.7
Nn2g11456 Nelumbo nucifera HOM05D001930 ORTHO05D001345 2.0e-15 85.5 79 57.0
Nitab4.5_0000802g0030 Nicotiana tabacum HOM05D001930 ORTHO05D001345 7.5e-15 83.6 83 57.8
Dinv17980 Davidia involucrata HOM05D001930 ORTHO05D001345 1.7e-14 82.4 75 57.3
Migut.F00675 Erythranthe guttata HOM05D001930 ORTHO05D001345 1.7e-14 82.4 83 55.4
GSVIVG01032844001 Vitis vinifera HOM05D001930 ORTHO05D001345 1.7e-14 82.4 83 55.4
Aqoxy2G00919 Aquilegia oxysepala HOM05D001930 ORTHO05D001345 2.2e-14 82.0 75 57.3
CSS0031125 Camellia sinensis var. sinensis HOM05D001930 ORTHO05D001345 2.2e-14 82.0 75 57.3
Hma1.2p1_0446F.1_g154590 Hydrangea macrophylla HOM05D001930 ORTHO05D001345 2.2e-14 82.0 75 58.7
Lalb_Chr10g0105111 Lupinus albus HOM05D001930 ORTHO05D001345 2.4e-13 78.6 77 53.2
SalBow6G0604 Salvia bowleyana HOM05D001930 ORTHO05D001345 2.4e-13 78.6 75 56.0
Rhsim03G0142000 Rhododendron simsii HOM05D001930 ORTHO05D001345 3.2e-13 78.2 76 52.6
Solyc05g052715.1 Solanum lycopersicum HOM05D001930 ORTHO05D001345 3.2e-13 78.2 75 53.3
PSO339G3119 Papaver somniferum HOM05D001930 ORTHO05D001345 4.1e-13 77.8 76 50.0
PSO801G0843 Papaver somniferum HOM05D001930 ORTHO05D001345 4.1e-13 77.8 71 53.5
Nitab4.5_0008493g0010 Nicotiana tabacum HOM05D001930 ORTHO05D001345 5.4e-13 77.4 95 50.5
Nitab4.5_0002100g0020 Nicotiana tabacum HOM05D001930 ORTHO05D001345 7.0e-13 77.0 83 51.8
TAR369G0785 Trochodendron aralioides HOM05D001930 ORTHO05D001345 7.0e-13 77.0 75 53.3
Cpa.g.sc19.190 Carica papaya HOM05D001930 ORTHO05D001345 1.2e-12 76.3 74 50.0
CiPaw.01G297400 Carya illinoinensis HOM05D001930 ORTHO05D001345 1.2e-12 76.3 76 53.9
Lj8C68G6 Lonicera japonica HOM05D001930 ORTHO05D001345 1.2e-12 76.3 75 52.0
Oeu025644.2 Olea europaea HOM05D001930 ORTHO05D001345 1.2e-12 76.3 75 50.7
Eucgr.G03055 Eucalyptus grandis HOM05D001930 ORTHO05D001345 1.6e-12 75.9 71 56.3
CDE07G0205 Ceratophyllum demersum HOM05D001930 ORTHO05D001345 2.0e-12 75.5 76 48.7
Actinidia13930 Actinidia chinensis HOM05D001930 ORTHO05D001345 3.5e-12 74.7 75 52.0
Hma1.2p1_0281F.1_g113000 Hydrangea macrophylla HOM05D001930 ORTHO05D001345 3.5e-12 74.7 75 49.3
Lsat_1_v5_gn_8_12340 Lactuca sativa HOM05D001930 ORTHO05D001345 4.6e-12 74.3 76 52.6
Lj1A953G44 Lonicera japonica HOM05D001930 ORTHO05D001345 4.6e-12 74.3 83 53.0
MSTRG.27324 Avicennia marina HOM05D001930 ORTHO05D001345 5.9e-12 73.9 81 48.1
Cfa001331 Carpinus fangiana HOM05D001930 ORTHO05D001345 5.9e-12 73.9 79 51.9
ClCG11G006220 Citrullus lanatus HOM05D001930 ORTHO05D001345 5.9e-12 73.9 77 53.2
DCAR_024834 Daucus carota HOM05D001930 ORTHO05D001345 5.9e-12 73.9 73 56.2
Oeu064385.2 Olea europaea HOM05D001930 ORTHO05D001345 5.9e-12 73.9 75 54.7
Sp4g22360 Schrenkiella parvula HOM05D001930 ORTHO05D001345 7.8e-12 73.6 76 53.9
Actinidia00941 Actinidia chinensis HOM05D001930 ORTHO05D001345 1.0e-11 73.2 75 49.3
CANSAT56G4542 Cannabis sativa HOM05D001930 ORTHO05D001345 1.3e-11 72.8 78 51.3
CARHR135010 Cardamine hirsuta HOM05D001930 ORTHO05D001345 1.3e-11 72.8 76 52.6
FvH4_7g24320 Fragaria vesca HOM05D001930 ORTHO05D001345 1.3e-11 72.8 74 54.1
FAN01G1543 Fragaria x ananassa HOM05D001930 ORTHO05D001345 1.3e-11 72.8 74 54.1
FAN10G2989 Fragaria x ananassa HOM05D001930 ORTHO05D001345 1.3e-11 72.8 74 54.1
SGA_v2.0_scaffold60G20991 Striga asiatica HOM05D001930 ORTHO05D001345 1.3e-11 72.8 83 54.2
PGR142G0208 Punica granatum HOM05D001930 ORTHO05D001345 1.7e-11 72.4 76 51.3
RcHm_v2.0_Chr1g0369981 Rosa chinensis HOM05D001930 ORTHO05D001345 1.7e-11 72.4 73 53.4
Ciclev10030993m.g Citrus clementina HOM05D001930 ORTHO05D001345 2.3e-11 72.0 76 52.6
Sed0016379 Sechium edule HOM05D001930 ORTHO05D001345 2.3e-11 72.0 77 53.2
MELO3C008291.2 Cucumis melo HOM05D001930 ORTHO05D001345 2.9e-11 71.6 77 51.9
Glyma.18G028700 Glycine max HOM05D001930 ORTHO05D001345 2.9e-11 71.6 77 49.4
MD07G1220200 Malus domestica HOM05D001930 ORTHO05D001345 2.9e-11 71.6 73 53.4
Psat5g126440 Pisum sativum HOM05D001930 ORTHO05D001345 2.9e-11 71.6 82 51.2
AT2G40070 Arabidopsis thaliana HOM05D001930 ORTHO05D001345 3.9e-11 71.2 76 51.3
Aa31LG5G19550 Aethionema arabicum HOM05D001930 ORTHO05D001345 5.0e-11 70.9 77 51.9
Oeu048249.1 Olea europaea HOM05D001930 ORTHO05D001345 5.0e-11 70.9 74 54.1
Cc02_g06660 Coffea canephora HOM05D001930 ORTHO05D001345 6.6e-11 70.5 85 49.4
Thhalv10016404m.g Eutrema salsugineum HOM05D001930 ORTHO05D001345 6.6e-11 70.5 76 51.3
AUR62012234 Chenopodium quinoa HOM05D001930 ORTHO05D001345 8.6e-11 70.1 76 48.7
CsaV3_6G001770 Cucumis sativus L. HOM05D001930 ORTHO05D001345 8.6e-11 70.1 76 51.3
DCAR_028566 Daucus carota HOM05D001930 ORTHO05D001345 8.6e-11 70.1 78 51.3
FAN03G2510 Fragaria x ananassa HOM05D001930 ORTHO05D001345 1.1e-10 69.7 74 52.7
Glyma.02G256600 Glycine max HOM05D001930 ORTHO05D001345 1.1e-10 69.7 78 48.7
Glyma.14G060100 Glycine max HOM05D001930 ORTHO05D001345 1.1e-10 69.7 79 48.1
MD01G1132400 Malus domestica HOM05D001930 ORTHO05D001345 1.1e-10 69.7 77 49.4
Manes.10G014000 Manihot esculenta HOM05D001930 ORTHO05D001345 1.1e-10 69.7 73 56.2
Medtr3g070300 Medicago truncatula HOM05D001930 ORTHO05D001345 1.1e-10 69.7 82 51.2
AUR62022866 Chenopodium quinoa HOM05D001930 ORTHO05D001345 1.5e-10 69.3 76 48.7
Dinv34396 Davidia involucrata HOM05D001930 ORTHO05D001345 1.5e-10 69.3 53 64.2
Atru.chr12.18 Acer truncatum HOM05D001930 ORTHO05D001345 1.9e-10 68.9 79 48.1
Ca_15267_v3 Cicer arietinum L. HOM05D001930 ORTHO05D001345 1.9e-10 68.9 77 50.6
MBI14_g28262_MAGBIO Magnolia biondii HOM05D001930 ORTHO05D001345 1.9e-10 68.9 75 48.0
TPR.G2544 Trifolium pratense HOM05D001930 ORTHO05D001345 1.9e-10 68.9 81 49.4
AL4G37690 Arabidopsis lyrata HOM05D001930 ORTHO05D001345 2.5e-10 68.6 77 49.4
CANSAT56G0325 Cannabis sativa HOM05D001930 ORTHO05D001345 2.5e-10 68.6 77 50.6
Carub.0004s2221 Capsella rubella HOM05D001930 ORTHO05D001345 2.5e-10 68.6 77 49.4
arahy.Tifrunner.gnm1.ann1.1VS4ZL Arachis hypogaea HOM05D001930 ORTHO05D001345 3.3e-10 68.2 74 50.0
arahy.Tifrunner.gnm1.ann1.P8UNKF Arachis hypogaea HOM05D001930 ORTHO05D001345 3.3e-10 68.2 74 50.0
BolC4t22362H Brassica oleracea HOM05D001930 ORTHO05D001345 3.3e-10 68.2 77 51.9
Thecc.10G020700 Theobroma cacao HOM05D001930 ORTHO05D001345 3.3e-10 68.2 79 48.1
MSTRG.8950 Avicennia marina HOM05D001930 ORTHO05D001345 4.3e-10 67.8 83 48.2
BcaB02g09056 Brassica carinata HOM05D001930 ORTHO05D001345 4.3e-10 67.8 78 51.3
MBI05_g34494_MAGBIO Magnolia biondii HOM05D001930 ORTHO05D001345 4.3e-10 67.8 75 48.0
Hund13841 Selenicereus undatus HOM05D001930 ORTHO05D001345 4.3e-10 67.8 76 47.4
MBI02_g39000_MAGBIO Magnolia biondii HOM05D001930 ORTHO05D001345 5.6e-10 67.4 76 48.7
unitig_46.g18737 Utricularia gibba HOM05D001930 ORTHO05D001345 5.6e-10 67.4 75 50.7
Lalb_Chr03g0043161 Lupinus albus HOM05D001930 ORTHO05D001345 7.3e-10 67.0 78 48.7
Lalb_Chr15g0084191 Lupinus albus HOM05D001930 ORTHO05D001345 9.5e-10 66.6 78 44.9
Phvul.001G241800 Phaseolus vulgaris HOM05D001930 ORTHO05D001345 1.2e-09 66.2 77 46.8
THA.LOC104810417 Tarenaya hassleriana HOM05D001930 ORTHO05D001345 1.2e-09 66.2 76 48.7
Duzib106G1667 Durio zibethinus HOM05D001930 ORTHO05D001345 1.6e-09 65.9 79 45.6
Lsat_1_v5_gn_2_122761 Lactuca sativa HOM05D001930 ORTHO05D001345 1.6e-09 65.9 83 44.6
VMungo1383G0091 Vigna mungo HOM05D001930 ORTHO05D001345 1.6e-09 65.9 77 46.8
arahy.Tifrunner.gnm1.ann1.G8RZTB Arachis hypogaea HOM05D001930 ORTHO05D001345 2.1e-09 65.5 75 52.0
arahy.Tifrunner.gnm1.ann1.I8BS46 Arachis hypogaea HOM05D001930 ORTHO05D001345 2.1e-09 65.5 75 52.0
ATR0618G241 Amborella trichopoda HOM05D001930 ORTHO05D001345 2.8e-09 65.1 79 45.6
Glyma.11G228400 Glycine max HOM05D001930 ORTHO05D001345 2.8e-09 65.1 77 46.8
Lj6g0015169 Lotus japonicus HOM05D001930 ORTHO05D001345 2.8e-09 65.1 76 44.7
LjContig00142g0017848 Lotus japonicus HOM05D001930 ORTHO05D001345 2.8e-09 65.1 76 44.7
SHI03472 Sapria himalayana HOM05D001930 ORTHO05D001345 3.6e-09 64.7 112 35.7
EL10Ac2g04813 Beta vulgaris HOM05D001930 ORTHO05D001345 4.7e-09 64.3 76 47.4
Dinv23092 Davidia involucrata HOM05D001930 ORTHO05D001345 4.7e-09 64.3 70 45.7
ECA238G2369 Erigeron canadensis HOM05D001930 ORTHO05D001345 4.7e-09 64.3 76 47.4
HanXRQChr14g0459861 Helianthus annuus HOM05D001930 ORTHO05D001345 4.7e-09 64.3 71 47.9
SGA_v2.0_scaffold44G16687 Striga asiatica HOM05D001930 ORTHO05D001345 6.2e-09 63.9 83 50.6
Ah.10g036510 Amaranthus hybridus HOM05D001930 ORTHO05D001345 1.0e-08 63.2 76 43.4
Gorai.012G076400 Gossypium raimondii HOM05D001930 ORTHO05D001345 1.0e-08 63.2 79 44.3
THA.LOC104810086 Tarenaya hassleriana HOM05D001930 ORTHO05D001345 1.0e-08 63.2 76 47.4
arahy.Tifrunner.gnm1.ann1.84M4BY Arachis hypogaea HOM05D001930 ORTHO05D001345 1.4e-08 62.8 74 50.0
Ah.16g103400 Amaranthus hybridus HOM05D001930 ORTHO05D001345 1.8e-08 62.4 76 46.1
arahy.Tifrunner.gnm1.ann1.238B6D Arachis hypogaea HOM05D001930 ORTHO05D001345 1.8e-08 62.4 74 50.0
arahy.Tifrunner.gnm1.ann1.CY1II1 Arachis hypogaea HOM05D001930 ORTHO05D001345 1.8e-08 62.4 74 50.0
Lalb_Chr18g0052641 Lupinus albus HOM05D001930 ORTHO05D001345 2.3e-08 62.0 75 45.3
vmacro06978 Vaccinium macrocarpon HOM05D001930 ORTHO05D001345 2.3e-08 62.0 53 58.5
Potri.010G190300 Populus trichocarpa HOM05D001930 ORTHO05D001345 3.1e-08 61.6 54 53.7
Phvul.008G224800 Phaseolus vulgaris HOM05D001930 ORTHO05D001345 4.0e-08 61.2 88 44.3
CANSAT35G1762 Cannabis sativa HOM05D001930 ORTHO05D001345 5.2e-08 60.8 90 43.3
Ciclev10011390m.g Citrus clementina HOM05D001930 ORTHO05D001345 5.2e-08 60.8 73 46.6
COL.COLO4_25689 Corchorus olitorius HOM05D001930 ORTHO05D001345 5.2e-08 60.8 79 43.0
MBI03_g07299_MAGBIO Magnolia biondii HOM05D001930 ORTHO05D001345 5.2e-08 60.8 76 47.4
BcaB06g29123 Brassica carinata HOM05D001930 ORTHO05D001345 6.8e-08 60.5 74 47.3
Glyma.18G199700 Glycine max HOM05D001930 ORTHO05D001345 6.8e-08 60.5 74 48.6
Gohir.D04G067400 Gossypium hirsutum HOM05D001930 ORTHO05D001345 8.9e-08 60.1 79 43.0
HanXRQChr12g0370531 Helianthus annuus HOM05D001930 ORTHO05D001345 1.2e-07 59.7 75 45.3
VMungo1383G2844 Vigna mungo HOM05D001930 ORTHO05D001345 1.2e-07 59.7 74 50.0
Phvul.008G105200 Phaseolus vulgaris HOM05D001930 ORTHO05D001345 1.5e-07 59.3 74 48.6
Sabra10G0146700 Salix brachista HOM05D001930 ORTHO05D001345 1.5e-07 59.3 54 51.9
Hund13843 Selenicereus undatus HOM05D001930 ORTHO05D001345 1.5e-07 59.3 76 43.4
CiPaw.02G191500 Carya illinoinensis HOM05D001930 ORTHO05D001345 2.0e-07 58.9 55 54.5
VMungo0647G2500 Vigna mungo HOM05D001930 ORTHO05D001345 2.0e-07 58.9 88 43.2
C04p07410 Brassica napus HOM05D001930 ORTHO05D001345 2.6e-07 58.5 77 46.8
Actinidia11600 Actinidia chinensis HOM05D001930 ORTHO05D001345 3.4e-07 58.2 75 44.0
LjContig00357g0006827 Lotus japonicus HOM05D001930 ORTHO05D001345 3.4e-07 58.2 83 43.4
Sopen05g031250 Solanum pennellii HOM05D001930 ORTHO05D001345 4.4e-07 57.8 54 53.7
PGSC0003DMG401027184 Solanum tuberosum HOM05D001930 ORTHO05D001345 4.4e-07 57.8 54 53.7
Potri.008G066900 Populus trichocarpa HOM05D001930 ORTHO05D001345 5.8e-07 57.4 54 48.1
Atru.chr8.2224 Acer truncatum HOM05D001930 ORTHO05D001345 7.5e-07 57.0 76 47.4
Duzib128G0280 Durio zibethinus HOM05D001930 ORTHO05D001345 7.5e-07 57.0 79 41.8
TWI74G0539 Tripterygium wilfordii HOM05D001930 ORTHO05D001345 9.8e-07 56.6 73 45.2
A05p06400 Brassica napus HOM05D001930 ORTHO05D001345 1.3e-06 56.2 76 46.1
BraA05t19608Z Brassica rapa HOM05D001930 ORTHO05D001345 1.3e-06 56.2 76 46.1
Medtr7g068220 Medicago truncatula HOM05D001930 ORTHO05D001345 1.3e-06 56.2 74 45.9
CiPaw.02G191300 Carya illinoinensis HOM05D001930 ORTHO05D001345 1.7e-06 55.8 57 50.9
Ca_05952_v3 Cicer arietinum L. HOM05D001930 ORTHO05D001345 1.7e-06 55.8 78 41.0
Psat3g128880 Pisum sativum HOM05D001930 ORTHO05D001345 1.7e-06 55.8 74 41.9
Prupe.6G275700 Prunus persica HOM05D001930 ORTHO05D001345 1.7e-06 55.8 86 41.9
HPP92_019257 Vanilla planifolia HOM05D001930 ORTHO05D001345 1.7e-06 55.8 75 44.0
CAN.G503.8 Capsicum annuum HOM05D001930 ORTHO05D001345 2.2e-06 55.5 54 51.9
Duzib114G0676 Durio zibethinus HOM05D001930 ORTHO05D001345 2.2e-06 55.5 79 39.2
Glyma.07G148600 Glycine max HOM05D001930 ORTHO05D001345 2.2e-06 55.5 74 45.9
Manes.07G128300 Manihot esculenta HOM05D001930 ORTHO05D001345 2.2e-06 55.5 55 56.4
Ca_07629_v3 Cicer arietinum L. HOM05D001930 ORTHO05D001345 2.9e-06 55.1 74 45.9
ECA233G1150 Erigeron canadensis HOM05D001930 ORTHO05D001345 2.9e-06 55.1 72 44.4
Gohir.D10G247300 Gossypium hirsutum HOM05D001930 ORTHO05D001345 2.9e-06 55.1 80 43.8
Gorai.011G285700 Gossypium raimondii HOM05D001930 ORTHO05D001345 2.9e-06 55.1 80 43.8
Lalb_Chr17g0346731 Lupinus albus HOM05D001930 ORTHO05D001345 2.9e-06 55.1 75 41.3
Peaxi162Scf00825g00020 Petunia axillaris HOM05D001930 ORTHO05D001345 2.9e-06 55.1 37 64.9
TPR.G8144 Trifolium pratense HOM05D001930 ORTHO05D001345 2.9e-06 55.1 74 43.2
Lalb_Chr19g0124681 Lupinus albus HOM05D001930 ORTHO05D001345 4.9e-06 54.3 74 44.6
SEGI_29321 Sequoiadendron giganteum HOM05D001930 ORTHO05D001345 4.9e-06 54.3 74 43.2
Gohir.A04G089500 Gossypium hirsutum HOM05D001930 ORTHO05D001345 8.3e-06 53.5 85 38.8
MD12G1164800 Malus domestica HOM05D001930 ORTHO05D001345 8.3e-06 53.5 80 41.2
PSO384G0402 Papaver somniferum HOM05D001930 ORTHO05D001345 8.3e-06 53.5 68 47.1
TWI77G0036 Tripterygium wilfordii HOM05D001930 ORTHO05D001345 8.3e-06 53.5 73 42.5


User provided reference genes

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