Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g025960 Solanum pennellii HOM05D007655 ORTHO05D009698 4.6e-161 571.6 391 100.0
Sopen03g025950 Solanum pennellii HOM05D007655 ORTHO05D009698 7.1e-138 494.6 389 92.3
Solyc03g095960.1 Solanum lycopersicum HOM05D007655 ORTHO05D009698 5.4e-122 441.8 326 98.8
PGSC0003DMG400027723 Solanum tuberosum HOM05D007655 ORTHO05D009698 5.6e-119 431.8 326 96.9
Nitab4.5_0006468g0020 Nicotiana tabacum HOM05D007655 ORTHO05D009698 3.7e-94 349.4 326 83.1
CAN.G1161.24 Capsicum annuum HOM05D007655 ORTHO05D009698 1.1e-87 327.8 328 65.2
Nitab4.5_0002701g0030 Nicotiana tabacum HOM05D007655 ORTHO05D009698 2.0e-84 317.0 299 69.2
Peaxi162Scf00304g00006 Petunia axillaris HOM05D007655 ORTHO05D009698 1.3e-59 234.6 348 43.4
Cc00_g02280 Coffea canephora HOM05D007655 ORTHO05D009698 1.2e-52 211.5 288 56.2
Lj1P959T25 Lonicera japonica HOM05D007655 ORTHO05D009698 4.5e-52 209.5 306 67.3
Atru.chr12.88 Acer truncatum HOM05D007655 ORTHO05D009698 3.7e-46 189.9 295 44.1
Actinidia00669 Actinidia chinensis HOM05D007655 ORTHO05D009698 2.4e-45 187.2 293 40.3
Hma1.2p1_0523F.1_g172110 Hydrangea macrophylla HOM05D007655 ORTHO05D009698 3.3e-42 176.8 328 45.7
TWI09G1069 Tripterygium wilfordii HOM05D007655 ORTHO05D009698 8.0e-41 172.2 295 62.7
Aqoxy3G03604 Aquilegia oxysepala HOM05D007655 ORTHO05D009698 1.0e-40 171.8 291 61.5
Cfa013933 Carpinus fangiana HOM05D007655 ORTHO05D009698 6.8e-40 169.1 313 39.0
COL.COLO4_06431 Corchorus olitorius HOM05D007655 ORTHO05D009698 1.2e-39 168.3 329 56.8
QL08p063505 Quercus lobata HOM05D007655 ORTHO05D009698 4.4e-39 166.4 329 57.8
MSTRG.197 Avicennia marina HOM05D007655 ORTHO05D009698 2.2e-38 164.1 319 34.2
Haze_22616 Corylus avellana HOM05D007655 ORTHO05D009698 2.2e-38 164.1 289 42.6
TAR131G0001 Trochodendron aralioides HOM05D007655 ORTHO05D009698 3.7e-38 163.3 308 59.4
TAR623G1347 Trochodendron aralioides HOM05D007655 ORTHO05D009698 3.7e-38 163.3 308 59.4
DCAR_029510 Daucus carota HOM05D007655 ORTHO05D009698 4.9e-38 162.9 284 35.2
RcHm_v2.0_Chr1g0370651 Rosa chinensis HOM05D007655 ORTHO05D009698 6.4e-38 162.5 290 61.4
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 5.4e-37 159.5 327 45.6
Cpa.g.sc19.153 Carica papaya HOM05D007655 ORTHO05D009698 1.6e-36 157.9 308 59.1
PGR044G0328 Punica granatum HOM05D007655 ORTHO05D009698 4.6e-36 156.4 320 41.9
Oeu029071.1 Olea europaea HOM05D007655 ORTHO05D009698 6.0e-36 156.0 309 62.5
Psat1g113880 Pisum sativum HOM05D007655 ORTHO05D009698 2.3e-35 154.1 326 33.7
Thecc.10G013100 Theobroma cacao HOM05D007655 ORTHO05D009698 2.3e-35 154.1 296 59.5
Rhsim09G0178900 Rhododendron simsii HOM05D007655 ORTHO05D009698 1.1e-34 151.8 288 62.2
Migut.F01479 Erythranthe guttata HOM05D007655 ORTHO05D009698 5.6e-34 149.4 310 54.8
Ciclev10033792m.g Citrus clementina HOM05D007655 ORTHO05D000636 2.8e-33 147.1 293 62.1
TPR.G40357 Trifolium pratense HOM05D007655 ORTHO05D009698 6.2e-33 146.0 325 32.0
vmacro10028 Vaccinium macrocarpon HOM05D007655 ORTHO05D009698 1.4e-32 144.8 288 61.5
Gohir.A06G170600 Gossypium hirsutum HOM05D007655 ORTHO05D009698 2.3e-32 144.1 321 45.5
Aa31LG5G19330 Aethionema arabicum HOM05D007655 ORTHO05D009698 3.1e-32 143.7 316 45.6
CARHR166100 Cardamine hirsuta HOM05D007655 ORTHO05D009698 5.2e-32 142.9 289 48.8
Lalb_Chr03g0033351 Lupinus albus HOM05D007655 ORTHO05D009698 5.2e-32 142.9 290 31.7
C08p31340 Brassica napus HOM05D007655 ORTHO05D009698 1.5e-31 141.4 300 45.7
BolC8t50755H Brassica oleracea HOM05D007655 ORTHO05D009698 1.5e-31 141.4 300 45.7
AL4G37960 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 4.4e-31 139.8 305 57.4
Sp5g06510 Schrenkiella parvula HOM05D007655 ORTHO05D009698 4.4e-31 139.8 328 44.8
AT2G40240 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 5.8e-31 139.4 291 59.5
Ca_25253_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 9.8e-31 138.7 309 34.0
CARHR135280 Cardamine hirsuta HOM05D007655 ORTHO05D009698 1.3e-30 138.3 319 56.1
Ca_19338_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 1.3e-30 138.3 310 34.8
Medtr6g065100 Medicago truncatula HOM05D007655 ORTHO05D009698 1.7e-30 137.9 293 42.0
Carub.0005s2276 Capsella rubella HOM05D007655 ORTHO05D009698 2.2e-30 137.5 289 41.5
A09p48980 Brassica napus HOM05D007655 ORTHO05D009698 3.7e-30 136.7 321 43.6
BraA09t40353Z Brassica rapa HOM05D007655 ORTHO05D009698 3.7e-30 136.7 321 43.6
CANSAT56G4119 Cannabis sativa HOM05D007655 ORTHO05D009698 4.9e-30 136.3 320 55.3
Aa31LG10G10970 Aethionema arabicum HOM05D007655 ORTHO05D009698 6.4e-30 136.0 312 55.4
HanXRQChr09g0253251 Helianthus annuus HOM05D007655 ORTHO05D009698 8.3e-30 135.6 325 34.5
AT3G56030 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 1.9e-29 134.4 290 39.0
Thhalv10006093m.g Eutrema salsugineum HOM05D007655 ORTHO05D009698 1.9e-29 134.4 288 49.7
Carub.0004s2246 Capsella rubella HOM05D007655 ORTHO05D009698 5.4e-29 132.9 328 54.0
Sc14g0002050 Simmondsia chinensis HOM05D007655 ORTHO05D009698 7.1e-29 132.5 315 52.1
Duzib106G0934 Durio zibethinus HOM05D007655 ORTHO05D009698 4.6e-28 129.8 310 55.5
Phvul.004G132400 Phaseolus vulgaris HOM05D007655 ORTHO05D009698 4.6e-28 129.8 328 38.7
FvH4_7g24790 Fragaria vesca HOM05D007655 ORTHO05D009698 7.8e-28 129.0 322 42.5
FAN06G4929 Fragaria x ananassa HOM05D007655 ORTHO05D009698 7.8e-28 129.0 322 42.2
GSVIVG01032781001 Vitis vinifera HOM05D007655 ORTHO05D009698 7.8e-28 129.0 267 62.5
AL5G37300 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 1.0e-27 128.6 291 38.1
Lj2g0024512 Lotus japonicus HOM05D007655 ORTHO05D009698 3.9e-27 126.7 318 38.1
FAN10G0222 Fragaria x ananassa HOM05D007655 ORTHO05D009698 5.6e-26 122.9 322 43.5
CiPaw.02G194200 Carya illinoinensis HOM05D007655 ORTHO05D009698 4.7e-25 119.8 309 36.2
VMungo0464G0151 Vigna mungo HOM05D007655 ORTHO05D009698 8.9e-24 115.5 323 39.9
ECA232G4997 Erigeron canadensis HOM05D007655 ORTHO05D009698 1.2e-23 115.2 325 38.5
Lsat_1_v5_gn_9_61061 Lactuca sativa HOM05D007655 ORTHO05D009698 1.5e-23 114.8 298 56.7
Gorai.N006800 Gossypium raimondii HOM05D007655 ORTHO05D009698 1.7e-22 111.3 321 45.5
Gohir.D06G178400 Gossypium hirsutum HOM05D007655 ORTHO05D009698 2.2e-22 110.9 321 45.2
Glyma.09G157400 Glycine max HOM05D007655 ORTHO05D009698 9.2e-21 105.5 326 38.0
THA.LOC104810115 Tarenaya hassleriana HOM05D007655 ORTHO05D009698 2.1e-20 104.4 291 55.0
Haze_17251 Corylus avellana HOM05D007655 ORTHO05D009698 3.5e-20 103.6 119 47.9
SalBow5G5388 Salvia bowleyana HOM05D007655 ORTHO05D009698 5.1e-19 99.8 110 44.5
CDE06G0331 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 1.9e-18 97.8 284 53.2
CSS0030670 Camellia sinensis var. sinensis HOM05D007655 ORTHO05D009698 3.6e-17 93.6 80 56.2
CDE12G0438 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 4.0e-16 90.1 113 43.4
Lalb_Chr19g0131421 Lupinus albus HOM05D007655 ORTHO05D009698 3.4e-15 87.0 90 46.7
MBI15_g28821_MAGBIO Magnolia biondii HOM05D007655 ORTHO05D009698 4.4e-15 86.7 120 40.0
Prupe.2G253200 Prunus persica HOM05D000815 ORTHO05D000636 6.4e-14 82.8 262 35.9
arahy.Tifrunner.gnm1.ann1.L8T4NM Arachis hypogaea HOM05D007655 ORTHO05D009698 2.7e-12 77.4 131 32.8
FAN03G2547 Fragaria x ananassa HOM05D007655 ORTHO05D009698 1.0e-11 75.5 241 41.5
Nn2g13207 Nelumbo nucifera HOM05D007655 ORTHO05D009698 2.3e-11 74.3 84 48.8
ATR0174G045 Amborella trichopoda HOM05D007655 ORTHO05D009698 4.8e-09 66.6 155 29.7
CDE04G2579 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 1.8e-08 64.7 104 35.6
FAN01G0024 Fragaria x ananassa HOM05D007655 ORTHO05D009698 5.3e-08 63.2 75 42.7
Potri.008G141700 Populus trichocarpa HOM05D007655 ORTHO05D009698 6.4e-06 56.2 61 44.3


User provided reference genes

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