Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 2.7e-250 868.2 447 100.0
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.8e-247 858.2 447 98.9
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.9e-206 720.7 442 86.0
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 6.7e-201 704.1 481 78.2
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 8.2e-183 644.0 410 84.4
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 6.1e-178 627.9 455 73.4
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.3e-175 620.2 451 72.1
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.7e-175 619.8 454 73.1
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 7.0e-174 614.4 451 73.4
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 5.0e-172 608.2 441 73.5
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.0e-169 600.5 459 70.2
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 5.2e-169 598.2 443 70.9
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 1.5e-168 596.7 449 70.6
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 3.4e-168 595.5 443 71.3
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 9.8e-168 594.0 457 70.0
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.2e-165 587.0 405 74.8
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 2.0e-165 586.3 446 70.2
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 2.9e-164 582.4 458 69.9
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 2.9e-164 582.4 458 69.9
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.2e-162 577.0 450 69.8
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 4.7e-162 575.1 464 68.3
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.0e-161 573.9 466 68.5
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 3.1e-161 572.4 461 68.5
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 4.0e-161 572.0 440 70.0
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 1.2e-160 570.5 453 68.0
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 2.0e-160 569.7 470 66.6
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 2.6e-160 569.3 422 70.1
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 3.4e-160 568.9 441 69.2
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 3.4e-160 568.9 430 70.2
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 5.8e-160 568.2 439 70.4
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 5.8e-160 568.2 448 67.6
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 7.5e-160 567.8 439 70.4
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.3e-159 567.0 443 69.3
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 1.7e-159 566.6 436 69.3
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 3.7e-159 565.5 444 68.7
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 3.7e-159 565.5 443 68.8
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 2.4e-158 562.8 446 67.0
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 4.1e-158 562.0 470 67.7
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 5.4e-158 561.6 444 68.5
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 7.0e-158 561.2 430 69.1
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 9.2e-158 560.8 461 67.0
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 1.2e-157 560.5 436 68.1
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 2.0e-157 559.7 486 63.2
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 2.0e-157 559.7 457 66.3
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 3.5e-157 558.9 441 66.9
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 6.0e-157 558.1 442 69.9
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.0e-157 558.1 442 69.9
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 1.3e-156 557.0 431 70.1
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 2.3e-156 556.2 417 71.0
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 6.6e-156 554.7 441 66.9
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 8.6e-156 554.3 440 68.6
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 1.1e-155 553.9 451 66.5
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.1e-155 553.9 438 66.7
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.5e-155 553.5 455 67.0
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.5e-155 553.5 455 67.0
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 2.5e-155 552.7 459 66.0
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 5.6e-155 551.6 413 71.9
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 7.3e-155 551.2 464 66.8
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.6e-154 550.1 440 68.9
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 4.7e-154 548.5 430 68.8
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 8.0e-154 547.7 462 66.5
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 8.0e-154 547.7 430 69.1
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 8.0e-154 547.7 443 67.7
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 1.7e-151 540.0 574 55.6
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 4.9e-151 538.5 449 65.7
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 1.9e-150 536.6 435 67.6
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 2.4e-150 536.2 412 68.7
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 2.1e-149 533.1 416 67.1
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 3.5e-149 532.3 465 63.4
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 7.8e-149 531.2 411 69.8
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.3e-148 529.6 437 65.2
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 3.0e-148 529.3 435 66.2
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 6.6e-148 528.1 424 66.3
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 6.6e-148 528.1 424 66.3
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 8.6e-148 527.7 428 69.6
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 7.3e-147 524.6 414 66.4
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 7.3e-147 524.6 452 65.0
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 9.5e-147 524.2 422 68.0
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 4.7e-146 521.9 519 57.8
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 2.3e-145 519.6 448 62.5
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 3.1e-145 519.2 441 66.2
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 5.2e-145 518.5 446 63.2
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 1.2e-144 517.3 402 66.2
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.0e-144 516.5 402 69.2
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 4.4e-144 515.4 416 66.1
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 7.5e-144 514.6 426 63.8
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 1.3e-143 513.8 405 67.7
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 1.7e-143 513.5 428 64.0
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 3.7e-143 512.3 424 64.2
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 4.9e-143 511.9 428 63.8
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 4.9e-143 511.9 428 63.8
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.1e-141 506.5 403 68.0
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 1.0e-140 504.2 438 63.5
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 4.3e-139 498.8 416 66.8
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 8.1e-138 494.6 448 62.5
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 8.1e-138 494.6 399 65.4
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 8.9e-137 491.1 414 65.7
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 2.2e-135 486.5 393 65.6
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 1.9e-134 483.4 471 61.4
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 2.4e-134 483.0 463 58.7
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 7.1e-134 481.5 376 68.9
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 2.1e-133 479.9 509 53.4
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 5.1e-132 475.3 402 60.9
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 1.1e-131 474.2 426 61.0
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 2.8e-130 469.5 362 68.5
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.2e-128 464.2 375 68.0
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 2.2e-127 459.9 442 57.7
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 2.9e-127 459.5 400 60.0
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 4.9e-127 458.8 453 58.5
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.4e-127 458.0 400 60.0
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 5.4e-126 455.3 404 60.6
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 7.1e-126 454.9 417 60.0
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.7e-125 453.0 434 58.1
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.3e-121 438.7 442 58.6
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.1e-117 426.8 412 56.6
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 3.5e-117 426.0 372 64.0
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 6.0e-117 425.2 355 65.1
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 3.3e-115 419.5 331 69.2
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.8e-113 413.7 364 59.9
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.0e-112 410.2 411 57.4
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 4.9e-111 405.6 377 58.9
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 3.0e-108 396.4 370 57.8
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 6.7e-108 395.2 369 57.2
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 1.9e-102 377.1 372 57.5
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 6.1e-101 372.1 369 56.9
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 3.3e-99 366.3 334 61.7
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 1.4e-97 360.9 361 56.5
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 2.1e-93 347.1 577 40.9
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.7e-90 337.4 398 50.3
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 1.4e-89 334.3 333 56.2
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.5e-87 325.5 289 60.9
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 2.5e-86 323.6 291 62.9
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.9e-79 300.1 323 53.9
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 5.3e-73 279.3 264 56.8
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 2.6e-72 276.9 310 54.8
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 2.8e-66 256.9 286 52.1
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 5.5e-62 242.7 237 57.4
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 2.2e-58 230.7 121 93.4
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 9.1e-57 225.3 256 54.7
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 1.3e-55 221.5 255 51.8
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 2.3e-47 194.1 370 35.4
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 8.6e-47 192.2 191 55.5
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 4.4e-43 179.9 132 75.0
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 1.9e-38 164.5 161 59.6
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 4.7e-37 159.8 154 63.0
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 2.0e-35 154.5 122 72.1
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 1.6e-29 134.8 114 61.4
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 6.4e-26 122.9 120 56.7
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 2.4e-25 120.9 103 65.0
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 7.8e-24 115.9 71 71.8
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.1e-22 112.1 95 57.9
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.9e-22 111.3 66 86.4
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 4.3e-22 110.2 113 54.0
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 4.7e-21 106.7 61 80.3
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.4e-20 104.4 71 69.0
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.5e-19 101.7 58 87.9
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.4e-17 94.4 79 70.9
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 3.2e-17 94.0 51 86.3
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 2.1e-16 91.3 140 40.0
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 3.5e-16 90.5 76 63.2
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.0e-15 89.0 51 86.3
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 1.0e-15 89.0 60 71.7
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 1.3e-15 88.6 152 40.1
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 6.6e-15 86.3 51 82.4
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 8.7e-15 85.9 46 84.8
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.9e-14 84.7 55 76.4
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 2.8e-13 80.9 84 59.5
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.1e-12 79.0 51 76.5
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.0e-11 74.7 69 59.4
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 2.4e-09 67.8 81 55.6
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 4.6e-08 63.5 36 86.1
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 4.3e-06 57.0 65 49.2


User provided reference genes

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