Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g024010 Solanum pennellii HOM05D003443 ORTHO05D009887 3.3e-189 664.8 329 100.0
Solyc03g093210.3 Solanum lycopersicum HOM05D003443 ORTHO05D009887 8.5e-177 623.6 329 94.2
PGSC0003DMG400014817 Solanum tuberosum HOM05D003443 ORTHO05D009887 3.6e-151 538.5 329 83.0
CAN.G48.26 Capsicum annuum HOM05D003443 ORTHO05D009887 6.4e-140 501.1 329 77.2
Nitab4.5_0002816g0090 Nicotiana tabacum HOM05D003443 ORTHO05D009887 2.4e-131 472.6 332 72.6
Nitab4.5_0010023g0010 Nicotiana tabacum HOM05D003443 ORTHO05D009887 1.7e-121 439.9 380 63.7
Peaxi162Scf00241g00037 Petunia axillaris HOM05D003443 ORTHO05D009887 2.3e-121 439.5 332 68.4
RhsimUnG0094800 Rhododendron simsii HOM05D003443 ORTHO05D009887 7.7e-69 265.0 334 45.5
Duzib093G0763 Durio zibethinus HOM05D003443 ORTHO05D009887 5.5e-67 258.8 326 43.9
Cc10_g11010 Coffea canephora HOM05D003443 ORTHO05D009887 5.1e-65 252.3 290 46.6
SGA_v2.0_scaffold52G18985 Striga asiatica HOM05D003443 ORTHO05D009887 1.1e-64 251.1 331 45.3
Thecc.08G121100 Theobroma cacao HOM05D003443 ORTHO05D009887 2.0e-64 250.4 326 44.5
GSVIVG01008903001 Vitis vinifera HOM05D003443 ORTHO05D009887 4.4e-64 249.2 338 43.8
TAR628G0851 Trochodendron aralioides HOM05D003443 ORTHO05D009887 2.4e-62 243.4 327 42.2
Gohir.A05G233300 Gossypium hirsutum HOM05D003443 ORTHO05D009887 7.0e-62 241.9 326 42.6
Migut.C01151 Erythranthe guttata HOM05D003443 ORTHO05D009887 2.0e-61 240.4 327 41.3
Gorai.009G244000 Gossypium raimondii HOM05D003443 ORTHO05D009887 4.5e-61 239.2 326 42.3
Atru.chr13.1406 Acer truncatum HOM05D003443 ORTHO05D009887 5.9e-61 238.8 328 42.7
QL09p035320 Quercus lobata HOM05D003443 ORTHO05D009887 1.0e-60 238.0 328 43.3
QL09p036517 Quercus lobata HOM05D003443 ORTHO05D009887 1.0e-60 238.0 328 43.3
MSTRG.1462 Avicennia marina HOM05D003443 ORTHO05D009887 5.0e-60 235.7 326 41.7
Prupe.1G501800 Prunus persica HOM05D003443 ORTHO05D009887 5.0e-60 235.7 331 42.6
vmacro00815 Vaccinium macrocarpon HOM05D003443 ORTHO05D009887 8.5e-60 235.0 278 48.6
Manes.02G161000 Manihot esculenta HOM05D003443 ORTHO05D009887 6.1e-58 228.8 326 39.6
SalBow7G0745 Salvia bowleyana HOM05D003443 ORTHO05D009887 1.4e-57 227.6 324 41.4
TWI56G0082 Tripterygium wilfordii HOM05D003443 ORTHO05D009887 1.4e-57 227.6 327 42.8
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 3.0e-57 226.5 317 42.3
FvH4_2g26511 Fragaria vesca HOM05D003443 ORTHO05D009887 3.0e-57 226.5 330 42.7
FAN27G2831 Fragaria x ananassa HOM05D003443 ORTHO05D009887 3.0e-57 226.5 339 41.3
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 3.9e-57 226.1 330 41.2
Sed0010337 Sechium edule HOM05D003443 ORTHO05D009887 2.6e-56 223.4 331 41.7
DCAR_003542 Daucus carota HOM05D003443 ORTHO05D009887 3.3e-56 223.0 324 40.4
HanXRQChr04g0111631 Helianthus annuus HOM05D003443 ORTHO05D009887 5.7e-56 222.2 333 39.6
Hund16841 Selenicereus undatus HOM05D003443 ORTHO05D009887 5.7e-56 222.2 324 41.0
Sabra05G0132100 Salix brachista HOM05D003443 ORTHO05D009887 7.4e-56 221.9 283 43.8
RcHm_v2.0_Chr6g0295331 Rosa chinensis HOM05D003443 ORTHO05D009887 2.8e-55 219.9 331 41.1
CANSAT25G3703 Cannabis sativa HOM05D003443 ORTHO05D009887 3.7e-55 219.5 330 41.5
CsaV3_4G028430 Cucumis sativus L. HOM05D003443 ORTHO05D009887 4.1e-54 216.1 331 40.2
Lsat_1_v5_gn_1_8320 Lactuca sativa HOM05D003443 ORTHO05D009887 7.0e-54 215.3 321 39.6
SalBow7G1610 Salvia bowleyana HOM05D003443 ORTHO05D009887 9.1e-54 214.9 324 40.1
Oeu050896.1 Olea europaea HOM05D003443 ORTHO05D009887 3.5e-53 213.0 284 44.7
Nn5g28161 Nelumbo nucifera HOM05D003443 ORTHO05D009887 4.5e-53 212.6 335 38.2
ClCG11G015590 Citrullus lanatus HOM05D003443 ORTHO05D009887 7.7e-53 211.8 330 39.7
MD08G1168100 Malus domestica HOM05D003443 ORTHO05D009887 1.0e-52 211.5 328 39.6
MELO3C010459.2 Cucumis melo HOM05D003443 ORTHO05D009887 2.5e-51 206.8 332 41.0
Phvul.008G165600 Phaseolus vulgaris HOM05D003443 ORTHO05D009887 3.2e-51 206.5 326 36.8
arahy.Tifrunner.gnm1.ann1.5F0RSX Arachis hypogaea HOM05D003443 ORTHO05D009887 9.4e-51 204.9 338 38.8
VMungo0647G1328 Vigna mungo HOM05D003443 ORTHO05D009887 1.2e-50 204.5 324 36.1
Psat2g078480 Pisum sativum HOM05D003443 ORTHO05D009887 1.0e-49 201.4 324 37.0
Eucgr.F03767 Eucalyptus grandis HOM05D003443 ORTHO05D009887 1.8e-49 200.7 320 37.5
arahy.Tifrunner.gnm1.ann1.JR3K98 Arachis hypogaea HOM05D003443 ORTHO05D009887 2.3e-49 200.3 338 38.2
Glyma.14G162900 Glycine max HOM05D003443 ORTHO05D009887 5.2e-49 199.1 326 36.2
AUR62004719 Chenopodium quinoa HOM05D003443 ORTHO05D009887 1.2e-48 198.0 327 38.5
AUR62023638 Chenopodium quinoa HOM05D003443 ORTHO05D009887 4.4e-48 196.1 321 38.9
Lalb_Chr10g0101921 Lupinus albus HOM05D003443 ORTHO05D009887 8.2e-47 191.8 326 35.0
TPR.G8502 Trifolium pratense HOM05D003443 ORTHO05D009887 8.2e-47 191.8 331 36.6
Ca_03725_v3 Cicer arietinum L. HOM05D003443 ORTHO05D009887 1.1e-46 191.4 325 35.1
Medtr5g059070 Medicago truncatula HOM05D003443 ORTHO05D009887 1.0e-44 184.9 326 35.9
Medtr5g459020 Medicago truncatula HOM05D003443 ORTHO05D009887 1.0e-44 184.9 326 35.9
Actinidia29454 Actinidia chinensis HOM05D003443 ORTHO05D009887 8.5e-44 181.8 236 43.6
Lj1g0008620 Lotus japonicus HOM05D003443 ORTHO05D009887 2.5e-43 180.3 326 35.0
Sc01g0001370 Simmondsia chinensis HOM05D003443 ORTHO05D009887 3.2e-43 179.9 327 34.6
Lj7C333G3 Lonicera japonica HOM05D003443 ORTHO05D009887 1.6e-42 177.6 259 41.3
EL10Ac1g00011 Beta vulgaris HOM05D003443 ORTHO05D009887 2.1e-42 177.2 329 37.7
ECA247G0446 Erigeron canadensis HOM05D003443 ORTHO05D009887 6.1e-42 175.6 293 35.8
Gohir.D05G235701 Gossypium hirsutum HOM05D003443 ORTHO05D009887 7.5e-40 168.7 228 42.5
Actinidia25684 Actinidia chinensis HOM05D003443 ORTHO05D009887 1.4e-38 164.5 200 46.5
Potri.005G174900 Populus trichocarpa HOM05D003443 ORTHO05D009887 2.9e-28 130.2 141 46.8
Haze_00482 Corylus avellana HOM05D003443 ORTHO05D009887 2.0e-24 117.5 238 33.6
Os04g0450500 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D009887 3.4e-24 116.7 282 29.1
MBI06_g02575_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 8.3e-23 112.1 180 37.8
MBI06_g44274_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 1.2e-21 108.2 171 39.8
Aqoxy5G02442 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 2.1e-18 97.4 150 38.7
MBI06_g35595_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 6.2e-18 95.9 133 39.8
ATR0684G011 Amborella trichopoda HOM05D003443 ORTHO05D009887 1.5e-16 91.3 133 34.6
Aqoxy5G02443 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 1.0e-12 78.6 123 36.6
Migut.K01194 Erythranthe guttata HOM05D003443 ORTHO05D009887 6.2e-10 69.3 51 62.7
SEGI_24688 Sequoiadendron giganteum HOM05D003443 ORTHO05D009887 6.2e-10 69.3 208 27.4
Lsat_1_v5_gn_1_21640 Lactuca sativa HOM05D001068 ORTHO05D002190 8.3e-07 58.9 42 57.1
MBI06_g35594_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 8.3e-07 58.9 80 41.2


User provided reference genes

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