Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g023730 Solanum pennellii HOM05D005186 ORTHO05D006278 1.2e-198 696.4 398 100.0
Solyc03g083970.3 Solanum lycopersicum HOM05D005186 ORTHO05D006278 1.7e-192 676.0 398 98.2
PGSC0003DMG400013858 Solanum tuberosum HOM05D005186 ORTHO05D006278 8.1e-182 640.6 404 91.8
CAN.G48.15 Capsicum annuum HOM05D005186 ORTHO05D006278 7.6e-164 580.9 410 83.9
Nitab4.5_0001383g0010 Nicotiana tabacum HOM05D005186 ORTHO05D006278 1.3e-158 563.5 412 78.2
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 1.1e-149 533.9 410 77.3
Peaxi162Scf00241g00318 Petunia axillaris HOM05D005186 ORTHO05D006278 1.9e-130 469.9 417 71.5
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 5.0e-107 392.1 423 60.5
Cc02_g04200 Coffea canephora HOM05D005186 ORTHO05D006278 4.3e-106 389.0 434 61.1
Oeu022491.2 Olea europaea HOM05D005186 ORTHO05D006278 2.8e-105 386.3 456 59.2
SGA_v2.0_scaffold543G52822 Striga asiatica HOM05D005186 ORTHO05D006278 5.2e-104 382.1 415 57.6
HanXRQChr14g0461411 Helianthus annuus HOM05D005186 ORTHO05D006278 7.8e-100 368.2 404 59.7
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 7.8e-100 368.2 426 55.4
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 1.9e-98 363.6 416 56.5
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 4.3e-98 362.5 415 60.7
SGA_v2.0_scaffold2G01194 Striga asiatica HOM05D005186 ORTHO05D006278 2.1e-97 360.1 420 56.4
Oeu042561.2 Olea europaea HOM05D005186 ORTHO05D006278 1.8e-96 357.1 451 53.7
MSTRG.128 Avicennia marina HOM05D005186 ORTHO05D006278 5.8e-95 352.1 444 55.0
Thecc.03G156500 Theobroma cacao HOM05D005186 ORTHO05D006278 7.5e-95 351.7 403 60.3
TWI39G1272 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 1.3e-94 350.9 416 56.5
Ciclev10005111m.g Citrus clementina HOM05D005186 ORTHO05D006278 1.7e-94 350.5 411 57.7
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 4.1e-93 345.9 452 54.4
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 7.1e-93 345.1 411 53.8
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 2.1e-92 343.6 432 57.9
Duzib205G1009 Durio zibethinus HOM05D005186 ORTHO05D006278 2.7e-92 343.2 404 59.4
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 1.0e-91 341.3 421 53.9
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 1.3e-91 340.9 418 58.4
Aqoxy7G00728 Aquilegia oxysepala HOM05D005186 ORTHO05D006278 1.7e-91 340.5 420 54.0
TWI23G1038 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 5.1e-91 339.0 413 54.7
Gohir.D03G107500 Gossypium hirsutum HOM05D005186 ORTHO05D006278 1.1e-90 337.8 399 60.7
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 1.1e-90 337.8 407 58.5
Nn1g01074 Nelumbo nucifera HOM05D005186 ORTHO05D006278 1.5e-90 337.4 423 52.7
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 2.1e-89 333.6 373 59.2
Gorai.003G113800 Gossypium raimondii HOM05D005186 ORTHO05D006278 2.1e-89 333.6 399 60.4
TAR374G0329 Trochodendron aralioides HOM05D005186 ORTHO05D006278 1.4e-88 330.9 422 53.6
Gohir.A03G058600 Gossypium hirsutum HOM05D005186 ORTHO05D006278 1.8e-88 330.5 406 58.9
Sabra15G0140200 Salix brachista HOM05D005186 ORTHO05D006278 5.2e-88 328.9 416 53.6
SalBow2G2587 Salvia bowleyana HOM05D005186 ORTHO05D006278 5.2e-88 328.9 407 51.6
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 4.9e-86 322.4 425 56.9
Potri.015G126800 Populus trichocarpa HOM05D005186 ORTHO05D006278 7.1e-85 318.5 418 56.2
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 9.2e-85 318.2 411 56.9
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 9.2e-85 318.2 432 51.2
Cpa.g.sc3.315 Carica papaya HOM05D005186 ORTHO05D006278 1.2e-84 317.8 417 55.4
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 2.7e-84 316.6 415 53.7
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 3.5e-84 316.2 420 48.8
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 6.0e-84 315.5 408 53.9
Lj8A42G21 Lonicera japonica HOM05D005186 ORTHO05D006278 6.0e-84 315.5 438 53.7
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 6.0e-84 315.5 421 57.0
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 1.0e-83 314.7 437 56.3
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 1.3e-83 314.3 400 53.2
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 1.7e-83 313.9 404 55.7
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 1.9e-82 310.5 434 55.5
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 1.9e-82 310.5 394 53.3
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 1.9e-82 310.5 394 53.3
PGR142G0385 Punica granatum HOM05D005186 ORTHO05D006278 2.5e-82 310.1 420 52.1
Hund11823 Selenicereus undatus HOM05D005186 ORTHO05D006278 5.6e-82 308.9 430 56.3
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 7.3e-82 308.5 435 55.2
Sabra12G0094900 Salix brachista HOM05D005186 ORTHO05D006278 4.7e-81 305.8 436 54.4
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 6.2e-81 305.4 406 53.2
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 1.8e-80 303.9 420 51.9
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 8.9e-80 301.6 392 54.1
Manes.06G135200 Manihot esculenta HOM05D005186 ORTHO05D006278 8.9e-80 301.6 422 53.6
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 1.2e-79 301.2 416 56.0
CiPaw.04G060200 Carya illinoinensis HOM05D005186 ORTHO05D006278 1.5e-79 300.8 414 54.1
Eucgr.A02891 Eucalyptus grandis HOM05D005186 ORTHO05D006278 2.0e-79 300.4 427 49.6
Ah.07g207900 Amaranthus hybridus HOM05D005186 ORTHO05D006278 1.3e-78 297.7 411 52.1
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 1.3e-78 297.7 411 53.5
PGR042G0730 Punica granatum HOM05D005186 ORTHO05D006278 2.2e-78 297.0 420 49.0
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 6.4e-78 295.4 437 50.1
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 9.3e-77 291.6 405 48.6
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 9.3e-77 291.6 394 51.8
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 1.2e-76 291.2 434 50.7
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 2.7e-76 290.0 412 50.5
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 3.5e-76 289.7 418 45.9
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.6e-76 289.3 411 50.6
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.6e-76 289.3 409 50.1
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 4.6e-76 289.3 440 50.7
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 7.8e-76 288.5 412 50.5
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 1.0e-75 288.1 412 45.6
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.3e-75 287.7 412 50.0
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 3.0e-75 286.6 325 61.2
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 3.0e-75 286.6 439 48.3
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 5.1e-75 285.8 432 48.1
TAR375G0993 Trochodendron aralioides HOM05D005186 ORTHO05D006278 5.1e-75 285.8 348 54.0
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 3.3e-74 283.1 412 50.5
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 9.6e-74 281.6 421 48.9
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 3.1e-72 276.6 313 58.5
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 5.3e-72 275.8 421 48.5
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 7.1e-69 265.4 419 47.3
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 9.3e-69 265.0 256 60.9
AUR62015515 Chenopodium quinoa HOM05D005186 ORTHO05D006278 4.6e-68 262.7 190 75.3
AUR62002195 Chenopodium quinoa HOM05D005186 ORTHO05D006278 1.7e-67 260.8 248 65.7
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 1.1e-64 251.5 374 45.5
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 1.5e-63 247.7 189 71.4
HPP92_022436 Vanilla planifolia HOM05D005186 ORTHO05D006278 3.4e-63 246.5 406 43.3
CSS0020740 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 1.7e-62 244.2 341 56.0
Migut.F01178 Erythranthe guttata HOM05D005186 ORTHO05D006278 8.4e-62 241.9 180 72.8
CiPaw.03G094100 Carya illinoinensis HOM05D005186 ORTHO05D006278 2.1e-60 237.3 340 54.1
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 2.7e-60 236.9 173 74.6
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 1.0e-59 235.0 457 45.5
Hund04601 Selenicereus undatus HOM05D005186 ORTHO05D006278 2.5e-58 230.3 393 43.5
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 2.8e-57 226.9 455 44.0
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 8.1e-57 225.3 456 43.9
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 6.9e-56 222.2 453 44.6
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 1.2e-55 221.5 174 67.2
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 1.2e-55 221.5 469 43.3
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 5.8e-55 219.2 445 40.7
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 1.0e-54 218.4 169 67.5
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 1.7e-54 217.6 445 40.4
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 8.4e-54 215.3 169 67.5
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 1.1e-53 214.9 297 55.9
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 2.5e-53 213.8 170 67.6
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 1.2e-52 211.5 477 43.8
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 3.5e-52 209.9 288 58.0
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 4.6e-52 209.5 169 67.5
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 1.3e-51 208.0 451 40.6
Zm00001eb379410 Zea mays HOM05D005186 ORTHO05D006278 7.4e-50 202.2 301 44.2
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 1.3e-49 201.4 393 40.2
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 6.3e-49 199.1 434 40.3
COL.COLO4_12507 Corchorus olitorius HOM05D005186 ORTHO05D006278 1.0e-46 191.8 362 40.6
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 4.2e-45 186.4 144 70.1
CDE11G1075 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 9.3e-45 185.3 408 37.5
Zm00001eb229450 Zea mays HOM05D005186 ORTHO05D006278 4.6e-44 183.0 167 59.9
HanXRQChr05g0146091 Helianthus annuus HOM05D005186 ORTHO05D006278 5.1e-43 179.5 167 61.7
Os06g0104400 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 4.3e-42 176.4 378 39.4
SHI13968 Sapria himalayana HOM05D005186 ORTHO05D006278 2.4e-40 170.6 418 33.5
Os02g0105500 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 2.0e-39 167.5 259 41.3
CAN.G1067.7 Capsicum annuum HOM05D005186 ORTHO05D006278 6.7e-35 152.5 180 53.9
Atru.chr5.265 Acer truncatum HOM05D005186 ORTHO05D006278 1.4e-32 144.8 130 58.5
CAN.G319.13 Capsicum annuum HOM05D005186 ORTHO05D006278 2.8e-25 120.6 80 82.5
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 2.1e-20 104.4 120 45.8
COL.COLO4_07114 Corchorus olitorius HOM05D005186 ORTHO05D006278 3.6e-20 103.6 79 72.2
GSVIVG01000691001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.0e-19 102.1 86 66.3
GSVIVG01000692001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.4e-19 101.7 86 67.4
CSS0003747 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 5.7e-18 96.3 67 71.6
ECA238G1972 Erigeron canadensis HOM05D005186 ORTHO05D006278 2.0e-15 87.8 64 71.9
Nn3g18746 Nelumbo nucifera HOM05D005186 ORTHO05D006278 1.6e-12 78.2 67 58.2
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 2.0e-10 71.2 116 35.3
Ca_25004_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 4.4e-10 70.1 261 37.5
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 7.5e-10 69.3 105 44.8
vmacro13212 Vaccinium macrocarpon HOM05D006269 ORTHO05D001487 7.5e-10 69.3 174 27.6
FAN03G1572 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.7e-09 68.2 66 54.5
Sabra14G0043300 Salix brachista HOM05D005186 ORTHO05D006278 4.8e-09 66.6 61 54.1
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 1.8e-08 64.7 107 34.6
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 4.1e-08 63.5 147 33.3
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 5.4e-08 63.2 101 33.7
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 7.0e-08 62.8 107 34.6
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 9.1e-08 62.4 107 30.8
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 2.0e-07 61.2 99 38.4
RcHm_v2.0_Chr1g0335331 Rosa chinensis HOM05D005186 ORTHO05D006278 2.0e-07 61.2 62 59.7
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 2.0e-07 61.2 99 41.4
Rhsim10G0141000 Rhododendron simsii HOM05D006269 ORTHO05D001487 2.7e-07 60.8 174 25.3
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 3.5e-07 60.5 117 31.6
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 3.5e-07 60.5 99 38.4
Atru.chr1.1456 Acer truncatum HOM05D005186 ORTHO05D006278 5.9e-07 59.7 67 46.3
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 5.9e-07 59.7 140 32.9
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 5.9e-07 59.7 140 32.9
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 5.9e-07 59.7 160 28.8
Lalb_Chr10g0096511 Lupinus albus HOM05D006269 ORTHO05D001487 7.7e-07 59.3 106 31.1
Pp3c13_3400 Physcomitrium patens HOM05D006269 ORTHO05D001487 7.7e-07 59.3 113 31.0
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 1.0e-06 58.9 99 39.4
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 1.0e-06 58.9 99 39.4
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 1.0e-06 58.9 147 33.3
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 1.3e-06 58.5 99 38.4
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 1.7e-06 58.2 99 37.4
arahy.Tifrunner.gnm1.ann1.YSVF0U Arachis hypogaea HOM05D006269 ORTHO05D001487 2.9e-06 57.4 117 30.8
Lsat_1_v5_gn_6_68201 Lactuca sativa HOM05D005186 ORTHO05D006278 2.9e-06 57.4 34 82.4
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 2.9e-06 57.4 99 36.4
SEGI_19331 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 2.9e-06 57.4 108 30.6
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 3.8e-06 57.0 99 38.4
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 3.8e-06 57.0 99 37.4
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 3.8e-06 57.0 99 36.4
SalBow5G2113 Salvia bowleyana HOM05D006269 ORTHO05D001487 3.8e-06 57.0 139 25.2
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 5.0e-06 56.6 133 30.1
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 5.0e-06 56.6 100 37.0
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 5.0e-06 56.6 99 38.4
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 6.5e-06 56.2 99 38.4
Cpa.g.sc96.31 Carica papaya HOM05D002685 ORTHO05D001487 6.5e-06 56.2 150 24.7
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 6.5e-06 56.2 99 35.4
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 8.5e-06 55.8 99 37.4


User provided reference genes

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