Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 2.7e-129 465.3 233 100.0
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.2e-126 455.7 233 97.9
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 1.8e-120 436.0 228 95.2
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 3.2e-114 415.2 229 90.0
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.5e-111 406.4 228 89.0
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 9.2e-109 397.1 228 86.0
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 1.3e-91 340.1 228 72.4
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 3.1e-88 328.9 228 71.1
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 7.5e-87 324.3 232 67.7
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 1.7e-86 323.2 228 69.7
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 2.4e-85 319.3 226 68.6
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 2.4e-85 319.3 226 69.5
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.2e-84 317.0 229 69.0
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 6.0e-84 314.7 228 69.7
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 7.8e-84 314.3 228 68.0
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 1.0e-83 313.9 230 69.1
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 1.0e-83 313.9 227 67.8
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.3e-83 313.5 230 68.7
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.3e-83 313.5 230 68.7
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 3.0e-83 312.4 228 67.1
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 3.9e-83 312.0 228 67.1
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 3.9e-83 312.0 226 67.7
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 1.1e-82 310.5 229 66.8
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 3.3e-82 308.9 231 67.1
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 3.3e-82 308.9 230 64.3
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 4.3e-82 308.5 226 67.3
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 5.6e-82 308.1 229 66.4
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 1.2e-81 307.0 229 66.8
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 1.6e-81 306.6 228 66.7
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 2.1e-81 306.2 226 66.8
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 4.7e-81 305.1 228 67.5
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 6.2e-81 304.7 227 66.1
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 6.2e-81 304.7 228 65.8
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 6.2e-81 304.7 228 68.0
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 8.1e-81 304.3 230 65.7
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 8.1e-81 304.3 230 65.7
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 8.1e-81 304.3 229 63.8
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 1.4e-80 303.5 225 67.6
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 1.8e-80 303.1 226 64.6
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 2.3e-80 302.8 229 64.6
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 5.2e-80 301.6 227 66.5
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 5.2e-80 301.6 228 65.8
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 1.2e-79 300.4 225 67.6
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 1.2e-79 300.4 234 65.8
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 1.5e-79 300.1 219 69.4
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 2.6e-79 299.3 208 69.7
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 4.4e-79 298.5 230 64.8
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 9.9e-79 297.4 236 64.0
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 4.1e-77 292.0 219 64.8
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 2.7e-76 289.3 228 64.5
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 2.7e-76 289.3 230 64.8
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 3.5e-76 288.9 231 63.2
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 4.6e-76 288.5 225 65.3
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 2.3e-75 286.2 221 64.7
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 3.0e-75 285.8 227 65.2
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 3.9e-75 285.4 205 68.3
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 3.3e-74 282.3 227 61.7
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 9.6e-74 280.8 216 63.4
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 1.2e-73 280.4 240 57.1
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 2.8e-73 279.3 230 63.9
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 1.8e-72 276.6 233 61.4
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 2.4e-72 276.2 230 61.7
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 8.9e-72 274.2 230 59.6
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 1.2e-71 273.9 228 62.3
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 1.5e-71 273.5 216 62.0
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 1.5e-71 273.5 214 63.1
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 3.4e-71 272.3 210 65.7
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 5.8e-71 271.6 231 58.9
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 1.4e-69 266.9 226 59.3
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 2.4e-69 266.2 229 60.3
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 1.2e-68 263.8 230 59.6
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 1.6e-68 263.5 226 60.6
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.6e-68 263.5 226 60.6
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 1.6e-68 263.5 208 63.9
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 2.1e-68 263.1 215 61.9
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 3.5e-68 262.3 232 59.1
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.0e-67 260.8 227 59.9
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 1.0e-67 260.8 226 60.2
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 1.0e-67 260.8 217 59.4
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 2.3e-67 259.6 235 60.0
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 3.0e-67 259.2 220 59.5
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 3.9e-67 258.8 226 56.6
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 5.1e-67 258.5 214 59.8
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 6.6e-67 258.1 216 57.9
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 8.7e-67 257.7 226 60.2
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 2.5e-66 256.1 209 62.2
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 3.3e-66 255.8 234 59.8
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 1.6e-65 253.4 235 58.3
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 2.1e-65 253.1 227 58.6
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 2.8e-65 252.7 281 50.9
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 1.8e-64 250.0 226 55.3
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 3.1e-64 249.2 228 55.3
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 3.1e-64 249.2 226 54.9
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 5.3e-64 248.4 238 58.0
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 2.6e-63 246.1 233 54.9
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 1.3e-62 243.8 246 54.9
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 2.9e-62 242.7 274 51.5
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 1.8e-59 233.4 133 88.7
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 6.7e-59 231.5 232 56.5
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 4.3e-58 228.8 201 60.7
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 8.1e-57 224.6 226 52.7
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 5.3e-56 221.9 204 58.8
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 2.0e-55 219.9 162 64.8
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.4e-53 213.0 227 49.3
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 1.2e-52 210.7 234 50.9
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 3.0e-51 206.1 168 64.9
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.8e-48 196.8 232 45.3
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 2.0e-47 193.4 167 58.7
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 2.9e-46 189.5 249 43.8
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 8.4e-46 188.0 233 44.2
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.2e-44 184.1 228 47.4
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 2.3e-43 179.9 224 44.6
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 2.8e-41 172.9 233 42.5
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 4.8e-41 172.2 233 45.1
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 8.2e-41 171.4 173 50.3
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 3.1e-40 169.5 224 41.5
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 7.6e-39 164.9 137 62.8
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 5.0e-38 162.2 133 57.9
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 1.4e-37 160.6 248 40.7
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 7.9e-36 154.8 93 75.3
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 8.7e-35 151.4 211 45.5
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 2.6e-31 139.8 93 67.7
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 1.4e-29 134.0 105 65.7
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 9.4e-29 131.3 140 52.9
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 3.0e-27 126.3 99 67.7
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 5.7e-26 122.1 136 52.9
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.3e-25 120.9 103 59.2
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.0e-23 113.6 55 98.2
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 5.0e-22 109.0 153 43.1
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 2.5e-21 106.7 157 38.9
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 3.0e-19 99.8 76 64.5
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.0e-15 87.0 132 41.7
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 4.5e-15 85.9 112 49.1
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 1.7e-14 84.0 73 61.6
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 1.1e-13 81.3 85 51.8
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.9e-13 80.5 109 40.4
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 9.4e-13 78.2 186 28.0
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 9.4e-13 78.2 132 38.6
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 1.8e-11 73.9 103 44.7
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.4e-10 69.3 94 43.6


User provided reference genes

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