Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g023220 Solanum pennellii HOM05D007326 ORTHO05D009048 1.1e-56 223.0 112 100.0
Solyc03g083450.1 Solanum lycopersicum HOM05D007326 ORTHO05D009048 1.4e-51 206.1 112 93.8
PGSC0003DMG400009118 Solanum tuberosum HOM05D007326 ORTHO05D009048 9.3e-43 176.8 109 83.5
Nitab4.5_0002492g0030 Nicotiana tabacum HOM05D007326 ORTHO05D009048 4.8e-39 164.5 112 74.1
CAN.G108.61 Capsicum annuum HOM05D007326 ORTHO05D009048 3.9e-33 144.8 112 69.6
Nitab4.5_0000714g0090 Nicotiana tabacum HOM05D007326 ORTHO05D009048 5.1e-33 144.4 114 68.4
Nitab4.5_0000714g0080 Nicotiana tabacum HOM05D001433 ORTHO05D009048 2.0e-32 142.5 112 67.0
Peaxi162Scf00550g00426 Petunia axillaris HOM05D007326 ORTHO05D009048 2.0e-29 132.5 99 71.7
Rhsim09G0011500 Rhododendron simsii HOM05D007326 ORTHO05D009048 5.3e-14 81.3 125 44.8
COL.COLO4_03426 Corchorus olitorius HOM05D007326 ORTHO05D009048 5.9e-13 77.8 95 50.5
vmacro06547 Vaccinium macrocarpon HOM05D007326 ORTHO05D009048 1.3e-12 76.6 123 43.1
Oeu037093.1 Olea europaea HOM05D007326 ORTHO05D009048 1.7e-12 76.3 112 43.8
ECA232G0297 Erigeron canadensis HOM05D007326 ORTHO05D009048 2.2e-12 75.9 96 49.0
Hma1.2p1_0538F.1_g174400 Hydrangea macrophylla HOM05D007326 ORTHO05D009048 2.9e-12 75.5 124 39.5
Gohir.A11G014200 Gossypium hirsutum HOM05D007326 ORTHO05D009048 8.5e-12 73.9 90 50.0
Gohir.D11G014400 Gossypium hirsutum HOM05D007326 ORTHO05D009048 8.5e-12 73.9 90 50.0
Gorai.007G014800 Gossypium raimondii HOM05D007326 ORTHO05D009048 8.5e-12 73.9 90 50.0
Glyma.07G086800 Glycine max HOM05D007326 ORTHO05D009048 1.1e-11 73.6 88 50.0
CSS0025602 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 1.5e-11 73.2 125 43.2
Atru.chr1.147 Acer truncatum HOM05D007326 ORTHO05D009048 2.5e-11 72.4 88 50.0
Glyma.09G190100 Glycine max HOM05D007326 ORTHO05D009048 2.5e-11 72.4 88 46.6
VMungo0464G1195 Vigna mungo HOM05D007326 ORTHO05D009048 2.5e-11 72.4 91 46.2
CSS0006442 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 4.2e-11 71.6 123 42.3
Dinv29296 Davidia involucrata HOM05D007326 ORTHO05D009048 5.5e-11 71.2 109 42.2
Ah.04g150610 Amaranthus hybridus HOM05D007326 ORTHO05D009048 1.2e-10 70.1 36 86.1
Lsat_1_v5_gn_9_58181 Lactuca sativa HOM05D007326 ORTHO05D009048 1.2e-10 70.1 94 46.8
TAR629G0302 Trochodendron aralioides HOM05D007326 ORTHO05D009048 1.2e-10 70.1 123 39.8
Ciclev10006260m.g Citrus clementina HOM05D007326 ORTHO05D009048 1.6e-10 69.7 118 41.5
Duzib205G1092 Durio zibethinus HOM05D007326 ORTHO05D009048 1.6e-10 69.7 124 39.5
CDE05G0016 Ceratophyllum demersum HOM05D007326 ORTHO05D009048 2.1e-10 69.3 89 46.1
CANSAT21G2203 Cannabis sativa HOM05D007326 ORTHO05D009048 2.7e-10 68.9 119 37.0
Actinidia06160 Actinidia chinensis HOM05D007326 ORTHO05D009048 3.6e-10 68.6 92 46.7
Os06g0157800 Oryza sativa ssp. japonica HOM05D007326 ORTHO05D009048 3.6e-10 68.6 32 90.6
TPR.G14875 Trifolium pratense HOM05D007326 ORTHO05D009048 3.6e-10 68.6 90 45.6
SGA_v2.0_scaffold105G30435 Striga asiatica HOM05D007326 ORTHO05D009048 4.7e-10 68.2 92 45.7
EL10Ac9g21379 Beta vulgaris HOM05D007326 ORTHO05D009048 6.1e-10 67.8 33 84.8
Lj1g0012737 Lotus japonicus HOM05D007326 ORTHO05D009048 8.0e-10 67.4 33 84.8
Mapoly0007s0050 Marchantia polymorpha HOM05D007326 ORTHO05D009048 8.0e-10 67.4 32 84.4
Oeu030278.1 Olea europaea HOM05D007326 ORTHO05D009048 8.0e-10 67.4 114 38.6
Sc03g0007330 Simmondsia chinensis HOM05D007326 ORTHO05D009048 8.0e-10 67.4 57 59.6
MSTRG.55 Avicennia marina HOM05D007326 ORTHO05D009048 1.0e-09 67.0 117 42.7
Nn4g24310 Nelumbo nucifera HOM05D000291 ORTHO05D009048 1.0e-09 67.0 67 56.7
Psat0s2030g0040 Pisum sativum HOM05D007326 ORTHO05D009048 1.0e-09 67.0 36 77.8
Thecc.03G195600 Theobroma cacao HOM05D007326 ORTHO05D009048 1.0e-09 67.0 119 41.2
Eucgr.A01472 Eucalyptus grandis HOM05D007326 ORTHO05D009048 1.8e-09 66.2 32 84.4
Medtr3g109290 Medicago truncatula HOM05D007326 ORTHO05D009048 1.8e-09 66.2 33 81.8
Haze_14278 Corylus avellana HOM05D007326 ORTHO05D009048 2.3e-09 65.9 89 43.8
FAN10G1221 Fragaria x ananassa HOM05D007326 ORTHO05D009048 2.3e-09 65.9 36 77.8
ATR0762G055 Amborella trichopoda HOM05D007326 ORTHO05D009048 3.0e-09 65.5 64 51.6
AL8G43810 Arabidopsis lyrata HOM05D007326 ORTHO05D009048 3.0e-09 65.5 32 87.5
Thhalv10005175m.g Eutrema salsugineum HOM05D007326 ORTHO05D009048 3.0e-09 65.5 32 87.5
MBI06_g08457_MAGBIO Magnolia biondii HOM05D007326 ORTHO05D009048 3.0e-09 65.5 67 56.7
SGA_v2.0_scaffold55G19762 Striga asiatica HOM05D007326 ORTHO05D009048 3.0e-09 65.5 85 45.9
Aa31LG1G16060 Aethionema arabicum HOM05D007326 ORTHO05D009048 4.0e-09 65.1 32 84.4
Potri.015G017700 Populus trichocarpa HOM05D007326 ORTHO05D009048 4.0e-09 65.1 96 41.7
Sed0023316 Sechium edule HOM05D007326 ORTHO05D009048 4.0e-09 65.1 43 65.1
Phvul.004G162900 Phaseolus vulgaris HOM05D007326 ORTHO05D009048 6.8e-09 64.3 30 90.0
QL09p009621 Quercus lobata HOM05D007326 ORTHO05D009048 6.8e-09 64.3 37 73.0
SEGI_38766 Sequoiadendron giganteum HOM05D007326 ORTHO05D009048 6.8e-09 64.3 32 84.4
TWI23G0901 Tripterygium wilfordii HOM05D007326 ORTHO05D009048 6.8e-09 64.3 123 41.5
ATR0037G036 Amborella trichopoda HOM05D007326 ORTHO05D009048 8.8e-09 63.9 66 48.5
AT5G67490 Arabidopsis thaliana HOM05D007326 ORTHO05D009048 8.8e-09 63.9 32 84.4
BcaB02g09919 Brassica carinata HOM05D007326 ORTHO05D009048 8.8e-09 63.9 32 84.4
Carub.0008s2698 Capsella rubella HOM05D007326 ORTHO05D009048 8.8e-09 63.9 32 84.4
CARHR280100 Cardamine hirsuta HOM05D007326 ORTHO05D009048 8.8e-09 63.9 32 84.4
CiPaw.06G009800 Carya illinoinensis HOM05D007326 ORTHO05D009048 8.8e-09 63.9 124 39.5
Ca_15635_v3 Cicer arietinum L. HOM05D007326 ORTHO05D009048 8.8e-09 63.9 30 86.7
A06p32910 Brassica napus HOM05D007326 ORTHO05D009048 1.2e-08 63.5 31 87.1
C03p59560 Brassica napus HOM05D007326 ORTHO05D009048 1.2e-08 63.5 31 87.1
BolC3t18219H Brassica oleracea HOM05D007326 ORTHO05D009048 1.2e-08 63.5 31 87.1
BraA06t26223Z Brassica rapa HOM05D007326 ORTHO05D009048 1.2e-08 63.5 31 87.1
FAN10G2940 Fragaria x ananassa HOM05D007326 ORTHO05D009048 1.2e-08 63.5 36 75.0
Sp2g29160 Schrenkiella parvula HOM05D007326 ORTHO05D009048 1.2e-08 63.5 31 87.1
ClCG01G000490 Citrullus lanatus HOM05D007326 ORTHO05D009048 1.5e-08 63.2 117 36.8
Zm00001eb376510 Zea mays HOM05D007326 ORTHO05D009048 1.5e-08 63.2 40 65.0
TAR629G2746 Trochodendron aralioides HOM05D007326 ORTHO05D009048 2.0e-08 62.8 37 73.0
Aqoxy7G00103 Aquilegia oxysepala HOM05D007326 ORTHO05D009048 3.4e-08 62.0 123 35.0
Manes.05G205250 Manihot esculenta HOM05D007326 ORTHO05D009048 3.4e-08 62.0 39 71.8
Manes.06G159200 Manihot esculenta HOM05D007326 ORTHO05D009048 3.4e-08 62.0 88 45.5
THA.LOC104819263 Tarenaya hassleriana HOM05D007326 ORTHO05D009048 4.4e-08 61.6 61 52.5
RcHm_v2.0_Chr1g0381021 Rosa chinensis HOM05D007326 ORTHO05D009048 5.7e-08 61.2 110 39.1
Actinidia06159 Actinidia chinensis HOM05D007326 ORTHO05D009048 9.8e-08 60.5 127 36.2
PGR042G3637 Punica granatum HOM05D007326 ORTHO05D009048 9.8e-08 60.5 112 42.0
Cpa.g.sc3.64 Carica papaya HOM05D007326 ORTHO05D009048 1.7e-07 59.7 128 39.1
AUR62013031 Chenopodium quinoa HOM05D007326 ORTHO05D009048 1.7e-07 59.7 113 35.4
TAR375G0672 Trochodendron aralioides HOM05D007326 ORTHO05D009048 2.2e-07 59.3 98 41.8
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 2.8e-07 58.9 63 50.8
MCO04G224 Micromonas commoda HOM05D007326 ORTHO05D009048 4.8e-07 58.2 37 67.6
Prupe.2G311900 Prunus persica HOM05D007326 ORTHO05D009048 4.8e-07 58.2 122 35.2
Rhsim03G0206100 Rhododendron simsii HOM05D043765 ORTHO05D009048 4.8e-07 58.2 109 39.4
TPR.G1327 Trifolium pratense HOM05D007326 ORTHO05D009048 1.1e-06 57.0 67 43.3
Pp3c23_5100 Physcomitrium patens HOM05D007326 ORTHO05D009048 3.1e-06 55.5 120 35.8
AUR62010038 Chenopodium quinoa HOM05D007326 ORTHO05D009048 4.1e-06 55.1 114 34.2
CBR_g41366 Chara braunii HOM05D007326 ORTHO05D009048 5.4e-06 54.7 44 63.6
CsaV3_5G000570 Cucumis sativus L. HOM05D007326 ORTHO05D009048 5.4e-06 54.7 116 37.1
unitig_8.g3560 Utricularia gibba HOM05D000146 ORTHO05D000178 7.0e-06 54.3 76 40.8


User provided reference genes

Program Settings