Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g023190 Solanum pennellii HOM05D006590 ORTHO05D008427 0.0e+00 1344.3 671 100.0
PGSC0003DMG400009120 Solanum tuberosum HOM05D006590 ORTHO05D008427 0.0e+00 1298.5 671 96.4
CAN.G108.67 Capsicum annuum HOM05D006590 ORTHO05D008427 0.0e+00 1203.0 670 89.9
Nitab4.5_0000714g0140 Nicotiana tabacum HOM05D006590 ORTHO05D008427 0.0e+00 1137.5 674 86.2
Peaxi162Scf00550g00546 Petunia axillaris HOM05D006590 ORTHO05D008427 0.0e+00 1118.6 673 84.5
Solyc03g083420.4 Solanum lycopersicum HOM05D006590 ORTHO05D008427 1.2e-310 1069.3 539 97.6
Nitab4.5_0007081g0010 Nicotiana tabacum HOM05D006590 ORTHO05D008427 1.4e-298 1029.2 674 79.4
Oeu041046.1 Olea europaea HOM05D006590 ORTHO05D008427 4.0e-266 921.4 669 68.3
CSS0003993 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 7.1e-263 910.6 677 67.9
Actinidia08640 Actinidia chinensis HOM05D006590 ORTHO05D008427 3.1e-258 895.2 674 66.8
Rhsim03G0207800 Rhododendron simsii HOM05D006590 ORTHO05D008427 1.2e-257 893.3 675 67.1
vmacro06540 Vaccinium macrocarpon HOM05D006590 ORTHO05D008427 4.5e-257 891.3 674 66.3
QL09p009505 Quercus lobata HOM05D006590 ORTHO05D008427 1.1e-255 886.7 673 66.6
GSVIVG01038710001 Vitis vinifera HOM05D006590 ORTHO05D008427 1.9e-255 885.9 625 70.1
Migut.F00225 Erythranthe guttata HOM05D006590 ORTHO05D008427 1.2e-254 883.2 668 65.9
Haze_00189 Corylus avellana HOM05D006590 ORTHO05D008427 3.5e-254 881.7 672 66.4
CiPaw.05G251800 Carya illinoinensis HOM05D006590 ORTHO05D008427 1.0e-253 880.2 674 66.6
ECA232G3273 Erigeron canadensis HOM05D006590 ORTHO05D008427 8.7e-253 877.1 669 66.5
Ciclev10004491m.g Citrus clementina HOM05D006590 ORTHO05D008427 1.9e-252 875.9 666 66.1
Dinv35324 Davidia involucrata HOM05D006590 ORTHO05D008427 2.5e-252 875.5 578 74.6
Cfa016251 Carpinus fangiana HOM05D006590 ORTHO05D008427 9.6e-252 873.6 677 65.6
SalBow4G1653 Salvia bowleyana HOM05D006590 ORTHO05D008427 1.3e-251 873.2 671 65.7
Prupe.2G311400 Prunus persica HOM05D006590 ORTHO05D008427 1.5e-249 866.3 677 66.5
Hma1.2p1_0404F.1_g145500 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 5.8e-249 864.4 586 72.0
TWI14G0328 Tripterygium wilfordii HOM05D006590 ORTHO05D008427 7.6e-249 864.0 671 65.3
Manes.06G159700 Manihot esculenta HOM05D006590 ORTHO05D008427 4.9e-248 861.3 634 67.7
Ca_16698_v3 Cicer arietinum L. HOM05D006590 ORTHO05D008427 6.4e-248 860.9 627 68.4
Eucgr.A01466 Eucalyptus grandis HOM05D006590 ORTHO05D008427 2.4e-247 859.0 627 68.1
arahy.Tifrunner.gnm1.ann1.X012TI Arachis hypogaea HOM05D006590 ORTHO05D008427 3.2e-247 858.6 634 67.4
Lj1g0007393 Lotus japonicus HOM05D006590 ORTHO05D008427 5.5e-247 857.8 658 66.1
HanXRQChr09g0250931 Helianthus annuus HOM05D006590 ORTHO05D008427 7.1e-247 857.4 621 67.8
Thecc.03G196200 Theobroma cacao HOM05D006590 ORTHO05D008427 2.1e-246 855.9 630 67.6
Atru.chr1.163 Acer truncatum HOM05D006590 ORTHO05D008427 6.0e-246 854.4 675 64.1
COL.COLO4_11262 Corchorus olitorius HOM05D006590 ORTHO05D008427 7.9e-246 854.0 702 62.7
FvH4_7g31750 Fragaria vesca HOM05D006590 ORTHO05D008427 2.3e-245 852.4 673 64.9
FAN06G3161 Fragaria x ananassa HOM05D006590 ORTHO05D008427 2.3e-245 852.4 673 64.9
FAN10G1373 Fragaria x ananassa HOM05D006590 ORTHO05D008427 3.9e-245 851.7 678 65.0
FAN10G2802 Fragaria x ananassa HOM05D006590 ORTHO05D008427 8.7e-245 850.5 678 64.9
FAN06G3878 Fragaria x ananassa HOM05D006590 ORTHO05D008427 1.9e-244 849.4 673 64.8
Duzib205G0486 Durio zibethinus HOM05D006590 ORTHO05D008427 2.5e-244 849.0 632 67.7
arahy.Tifrunner.gnm1.ann1.ICGL65 Arachis hypogaea HOM05D006590 ORTHO05D008427 7.4e-244 847.4 650 66.0
Medtr3g091290 Medicago truncatula HOM05D006590 ORTHO05D008427 7.4e-244 847.4 657 65.1
FAN03G2401 Fragaria x ananassa HOM05D006590 ORTHO05D008427 1.6e-243 846.3 678 64.9
Lalb_Chr08g0240321 Lupinus albus HOM05D006590 ORTHO05D008427 1.6e-243 846.3 609 68.5
Phvul.009G053500 Phaseolus vulgaris HOM05D006590 ORTHO05D008427 2.1e-243 845.9 630 67.3
RcHm_v2.0_Chr1g0380971 Rosa chinensis HOM05D006590 ORTHO05D008427 2.1e-243 845.9 679 64.8
Sc13g0009780 Simmondsia chinensis HOM05D006590 ORTHO05D008427 2.8e-243 845.5 634 65.3
MD01G1219800 Malus domestica HOM05D006590 ORTHO05D008427 3.7e-243 845.1 633 67.5
PGR042G1173 Punica granatum HOM05D006590 ORTHO05D008427 8.2e-243 844.0 622 68.5
Psat5g078080 Pisum sativum HOM05D006590 ORTHO05D008427 4.0e-242 841.6 614 67.6
TPR.G17286 Trifolium pratense HOM05D006590 ORTHO05D008427 4.0e-242 841.6 655 65.3
Glyma.06G127700 Glycine max HOM05D006590 ORTHO05D008427 5.3e-242 841.3 651 65.6
CANSAT21G0035 Cannabis sativa HOM05D006590 ORTHO05D008427 9.0e-242 840.5 592 68.6
Potri.015G017100 Populus trichocarpa HOM05D006590 ORTHO05D008427 2.0e-241 839.3 584 71.4
Gohir.D12G251400 Gossypium hirsutum HOM05D006590 ORTHO05D008427 2.6e-241 839.0 676 62.9
Cc02_g01670 Coffea canephora HOM05D006590 ORTHO05D008427 4.5e-241 838.2 579 71.0
Glyma.04G236600 Glycine max HOM05D006590 ORTHO05D008427 5.8e-241 837.8 630 66.7
Gohir.A12G250600 Gossypium hirsutum HOM05D006590 ORTHO05D008427 1.3e-240 836.6 676 62.7
Gorai.008G269500 Gossypium raimondii HOM05D006590 ORTHO05D008427 4.9e-240 834.7 676 62.6
AUR62006110 Chenopodium quinoa HOM05D006590 ORTHO05D008427 1.2e-238 830.1 676 63.2
Nn1g01869 Nelumbo nucifera HOM05D006590 ORTHO05D008427 3.5e-238 828.6 628 66.4
VMungo1309G0677 Vigna mungo HOM05D006590 ORTHO05D008427 3.5e-238 828.6 615 67.3
THA.LOC104800297 Tarenaya hassleriana HOM05D006590 ORTHO05D008427 8.7e-237 823.9 671 61.5
Aqoxy5G04233 Aquilegia oxysepala HOM05D006590 ORTHO05D008427 1.1e-236 823.5 669 62.5
FAN01G1498 Fragaria x ananassa HOM05D006590 ORTHO05D008427 1.9e-236 822.8 689 63.1
MBI07_g07100_MAGBIO Magnolia biondii HOM05D006590 ORTHO05D008427 3.3e-236 822.0 640 64.8
AUR62019378 Chenopodium quinoa HOM05D006590 ORTHO05D008427 4.3e-236 821.6 703 60.0
MELO3C008489.2 Cucumis melo HOM05D006590 ORTHO05D008427 5.7e-236 821.2 666 63.1
CsaV3_3G027870 Cucumis sativus L. HOM05D006590 ORTHO05D008427 7.4e-236 820.8 666 62.9
TAR375G1022 Trochodendron aralioides HOM05D006590 ORTHO05D008427 4.8e-235 818.1 645 65.0
Sp6g15580 Schrenkiella parvula HOM05D006590 ORTHO05D008427 6.9e-234 814.3 678 62.5
Thhalv10012882m.g Eutrema salsugineum HOM05D006590 ORTHO05D008427 1.2e-233 813.5 677 62.3
PSO170G2823 Papaver somniferum HOM05D006590 ORTHO05D008427 7.6e-233 810.8 625 64.5
BolC9t57211H Brassica oleracea HOM05D006590 ORTHO05D008427 1.0e-232 810.4 670 63.0
SGA_v2.0_scaffold44G16790 Striga asiatica HOM05D006590 ORTHO05D008427 1.0e-232 810.4 671 61.1
PSO063G2913 Papaver somniferum HOM05D006590 ORTHO05D008427 1.7e-232 809.7 625 64.3
CARHR266570 Cardamine hirsuta HOM05D006590 ORTHO05D008427 5.0e-232 808.1 676 61.7
Carub.0008s1361 Capsella rubella HOM05D006590 ORTHO05D008427 1.1e-231 807.0 671 61.7
BraA10t43179Z Brassica rapa HOM05D006590 ORTHO05D008427 2.5e-231 805.8 670 63.0
AL8G28150 Arabidopsis lyrata HOM05D006590 ORTHO05D008427 5.5e-231 804.7 674 61.4
Aa31LG3G9610 Aethionema arabicum HOM05D006590 ORTHO05D008427 7.2e-231 804.3 670 61.9
DCAR_014541 Daucus carota HOM05D006590 ORTHO05D008427 1.2e-230 803.5 612 64.2
Sed0010238 Sechium edule HOM05D006590 ORTHO05D008427 8.8e-229 797.3 651 61.3
A10p10910 Brassica napus HOM05D001108 ORTHO05D001619 2.5e-223 779.2 648 63.0
C09p43300 Brassica napus HOM05D001108 ORTHO05D001619 2.5e-223 779.2 648 62.5
Lsat_1_v5_gn_5_75160 Lactuca sativa HOM05D006590 ORTHO05D008427 2.2e-219 766.1 643 63.0
Os01g0655500 Oryza sativa ssp. japonica HOM05D006590 ORTHO05D008427 1.2e-217 760.4 634 60.3
EL10Ac3g05300 Beta vulgaris HOM05D006590 ORTHO05D008427 3.4e-217 758.8 630 61.3
CSS0014515 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 2.9e-216 755.7 539 70.3
BcaB08g35710 Brassica carinata HOM05D006590 ORTHO05D008427 2.5e-215 752.7 676 60.4
HPP92_006416 Vanilla planifolia HOM05D006590 ORTHO05D008427 3.9e-213 745.3 622 61.1
ATR0602G100 Amborella trichopoda HOM05D006590 ORTHO05D008427 1.1e-212 743.8 625 61.1
Potri.015G016801 Populus trichocarpa HOM05D006590 ORTHO05D008427 3.2e-207 725.7 583 65.2
Hma1.2p1_0404F.1_g145510 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 5.2e-197 691.8 460 73.0
SEGI_37244 Sequoiadendron giganteum HOM05D006590 ORTHO05D008427 4.0e-189 665.6 598 57.2
unitig_899.g15485 Utricularia gibba HOM05D006590 ORTHO05D008427 2.3e-184 649.8 592 56.4
Cpa.g.sc3.70 Carica papaya HOM05D006590 ORTHO05D008427 3.0e-176 622.9 678 51.2
Lj1C1015G5 Lonicera japonica HOM05D006590 ORTHO05D008427 4.4e-172 609.0 681 50.1
AT5G53450 Arabidopsis thaliana HOM05D006590 ORTHO05D008427 2.1e-166 590.1 460 65.2
Mapoly0022s0163 Marchantia polymorpha HOM05D006590 ORTHO05D008427 2.1e-166 590.1 618 51.9
ClCG05G008870 Citrullus lanatus HOM05D006590 ORTHO05D008427 1.5e-156 557.4 432 65.3
SMO172G0068 Selaginella moellendorffii HOM05D006590 ORTHO05D008427 7.1e-154 548.5 606 49.2
Zm00001eb158040 Zea mays HOM05D006590 ORTHO05D008427 4.0e-149 532.7 357 70.3
SalBow4G1387 Salvia bowleyana HOM05D006590 ORTHO05D008427 1.3e-144 517.7 360 68.6
Sabra15G0013100 Salix brachista HOM05D006590 ORTHO05D008427 3.7e-94 350.1 262 70.6
CBR_g39728 Chara braunii HOM05D006590 ORTHO05D008427 1.5e-90 338.2 623 35.3
Potri.015G016500 Populus trichocarpa HOM05D006590 ORTHO05D008427 2.8e-70 270.8 230 60.0
Actinidia33527 Actinidia chinensis HOM05D006590 ORTHO05D008427 7.0e-69 266.2 346 45.4
Potri.015G016600 Populus trichocarpa HOM05D006590 ORTHO05D008427 4.4e-55 220.3 158 69.0
Sabra15G0012800 Salix brachista HOM05D006590 ORTHO05D008427 8.1e-41 172.9 148 59.5
BcaC04g19592 Brassica carinata HOM05D006590 ORTHO05D008427 8.9e-40 169.5 122 68.9
Potri.015G016375 Populus trichocarpa HOM05D006590 ORTHO05D008427 7.6e-39 166.4 144 59.0
Potri.015G016300 Populus trichocarpa HOM05D006590 ORTHO05D008427 2.9e-38 164.5 134 62.7
Hund04856 Selenicereus undatus HOM05D006590 ORTHO05D008427 1.7e-30 138.7 185 49.2
Actinidia34212 Actinidia chinensis HOM05D006590 ORTHO05D008427 7.3e-26 123.2 73 74.0
COL.COLO4_02893 Corchorus olitorius HOM05D006590 ORTHO05D008427 5.8e-23 113.6 61 85.2
CDE10G1176 Ceratophyllum demersum HOM05D006590 ORTHO05D008427 2.1e-17 95.1 58 74.1
Hma1.2p1_0404F.1_g145520 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 5.3e-16 90.5 60 71.7
Lsat_1_v5_gn_2_64600 Lactuca sativa HOM05D006590 ORTHO05D011991 1.7e-14 85.5 125 39.2
CAN.G37.10 Capsicum annuum HOM05D006590 ORTHO05D008427 2.5e-13 81.6 56 69.6
Pp3c4_25980 Physcomitrium patens HOM05D002406 ORTHO05D007964 7.4e-10 70.1 317 25.6
Aqoxy2G01300 Aquilegia oxysepala HOM05D006590 ORTHO05D008427 3.7e-09 67.8 47 59.6
Pp3c26_5140 Physcomitrium patens HOM05D002406 ORTHO05D007964 1.4e-08 65.9 360 25.0
CDE09G1163 Ceratophyllum demersum HOM05D002406 ORTHO05D007964 2.4e-08 65.1 369 21.1
Mapoly0009s0197 Marchantia polymorpha HOM05D002406 ORTHO05D007964 4.1e-08 64.3 443 22.6
Sabra10G0098600 Salix brachista HOM05D002406 ORTHO05D007964 5.3e-08 63.9 347 21.0
SMO364G0095 Selaginella moellendorffii HOM05D002406 ORTHO05D007964 1.5e-07 62.4 258 22.9
Potri.008G116800 Populus trichocarpa HOM05D002406 ORTHO05D007964 2.0e-07 62.0 348 21.0
Cre02.g120250 Chlamydomonas reinhardtii HOM05D002406 ORTHO05D007964 2.6e-07 61.6 270 27.8
AagrBONN_evm.TU.Sc2ySwM_117.16 Anthoceros agrestis HOM05D002406 ORTHO05D007964 3.4e-07 61.2 294 22.8
FAN07G2527 Fragaria x ananassa HOM05D002406 ORTHO05D007964 3.4e-07 61.2 347 21.3
unitig_52.g17148 Utricularia gibba HOM05D002406 ORTHO05D007964 4.5e-07 60.8 347 20.7
Sabra08G0088500 Salix brachista HOM05D002406 ORTHO05D007964 5.8e-07 60.5 304 21.7
FvH4_4g28080 Fragaria vesca HOM05D002406 ORTHO05D007964 7.6e-07 60.1 347 21.0
MD13G1046400 Malus domestica HOM05D002406 ORTHO05D007964 7.6e-07 60.1 348 21.0
CAN.G430.6 Capsicum annuum HOM05D002406 ORTHO05D007964 1.3e-06 59.3 305 21.6
Oeu022120.1 Olea europaea HOM05D002406 ORTHO05D007964 1.3e-06 59.3 304 22.0
CBR_g8256 Chara braunii HOM05D002406 ORTHO05D007964 2.2e-06 58.5 264 23.5
COL.COLO4_07869 Corchorus olitorius HOM05D002406 ORTHO05D007964 2.2e-06 58.5 348 21.0
SGA_v2.0_scaffold14G06823 Striga asiatica HOM05D002406 ORTHO05D007964 2.2e-06 58.5 296 21.6
THA.LOC104808195 Tarenaya hassleriana HOM05D002406 ORTHO05D007964 2.2e-06 58.5 297 21.9
CSS0033832 Camellia sinensis var. sinensis HOM05D002406 ORTHO05D007964 3.8e-06 57.8 347 20.5
FAN12G2143 Fragaria x ananassa HOM05D002406 ORTHO05D007964 5.0e-06 57.4 258 21.7
Thecc.02G360900 Theobroma cacao HOM05D002406 ORTHO05D007964 6.5e-06 57.0 347 19.9
CiPaw.15G003700 Carya illinoinensis HOM05D002406 ORTHO05D007964 8.4e-06 56.6 347 19.9
RcHm_v2.0_Chr4g0435821 Rosa chinensis HOM05D002406 ORTHO05D007964 8.4e-06 56.6 303 21.8


User provided reference genes

Program Settings