Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 0.0e+00 1291.6 700 100.0
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 0.0e+00 1237.6 700 97.0
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 3.3e-287 991.5 699 80.1
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 6.1e-257 891.0 549 86.7
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 5.9e-212 741.5 772 57.4
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 1.9e-210 736.5 721 59.8
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.1e-205 720.7 722 59.0
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 2.0e-204 716.5 723 58.9
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.7e-198 695.7 722 55.8
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.1e-197 694.1 721 56.9
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 2.7e-196 689.5 715 56.2
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 3.3e-194 682.6 766 53.0
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.1e-192 677.6 728 56.5
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 6.8e-192 674.9 709 56.1
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 7.6e-191 671.4 709 56.0
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 6.0e-188 661.8 722 54.4
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 1.0e-187 661.0 651 57.1
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.5e-186 656.4 673 56.8
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 4.2e-181 639.0 721 54.6
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.0e-179 632.9 718 53.2
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 3.9e-179 632.5 722 55.7
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 8.7e-179 631.3 726 52.1
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 3.6e-177 625.9 727 53.1
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 7.6e-175 618.2 721 52.6
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 3.5e-172 609.4 734 51.4
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 9.6e-170 601.3 718 50.1
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 9.6e-170 601.3 694 54.6
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.1e-169 600.1 719 51.5
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 8.1e-169 598.2 707 51.8
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 1.4e-168 597.4 719 51.5
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 5.3e-168 595.5 715 51.2
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 6.9e-168 595.1 719 50.8
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 6.9e-168 595.1 758 51.2
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 4.5e-167 592.4 718 52.5
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 9.9e-167 591.3 744 52.8
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 1.3e-166 590.9 734 51.5
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 6.4e-166 588.6 719 51.9
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 8.4e-166 588.2 720 54.3
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 1.6e-164 583.9 724 51.8
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 7.9e-164 581.6 671 53.1
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 1.8e-163 580.5 696 53.0
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.8e-163 580.5 718 50.4
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 5.1e-163 578.9 713 52.2
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 1.1e-162 577.8 686 51.9
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 3.3e-162 576.2 706 52.1
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 5.6e-162 575.5 709 51.2
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.8e-161 573.2 709 51.1
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 1.1e-160 571.2 719 49.2
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 3.1e-160 569.7 728 50.0
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 6.9e-160 568.5 727 50.2
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 6.9e-160 568.5 725 50.2
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 6.9e-160 568.5 724 49.6
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 3.4e-159 566.2 719 51.2
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.5e-159 565.8 709 49.4
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 7.6e-159 565.1 694 50.6
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 7.6e-159 565.1 686 51.9
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 6.5e-158 562.0 720 50.8
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 1.4e-157 560.8 721 51.0
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.9e-157 560.5 715 51.3
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 4.2e-157 559.3 720 52.8
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 4.2e-157 559.3 712 50.4
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 4.2e-157 559.3 743 47.4
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 5.5e-157 558.9 694 50.6
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 1.2e-156 557.8 721 50.5
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.5e-156 556.2 707 50.2
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 4.6e-156 555.8 709 51.1
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 3.0e-155 553.1 708 52.0
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.5e-154 550.8 686 51.0
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 3.7e-153 546.2 699 49.4
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 3.1e-152 543.1 726 49.7
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 1.3e-150 537.7 649 51.6
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 2.7e-148 530.0 705 49.1
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.0e-147 528.1 694 49.1
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 5.1e-147 525.8 682 49.6
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 8.7e-147 525.0 715 47.7
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 8.2e-145 518.5 685 49.2
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 1.1e-144 518.1 728 46.7
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 2.4e-144 516.9 662 50.6
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 4.5e-143 512.7 727 45.8
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 8.5e-142 508.4 740 45.4
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 1.4e-141 507.7 711 47.0
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 7.2e-141 505.4 718 47.8
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 2.7e-140 503.4 718 48.2
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 3.6e-140 503.1 705 47.5
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 7.9e-140 501.9 658 48.2
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.0e-139 501.5 713 48.8
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 1.4e-139 501.1 704 50.0
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.0e-138 497.3 722 46.4
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 5.7e-138 495.7 725 47.7
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 3.1e-136 490.0 727 47.7
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 5.3e-136 489.2 728 47.9
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 5.3e-136 489.2 716 47.1
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 9.1e-136 488.4 722 46.1
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.5e-134 481.9 719 45.6
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.4e-133 481.1 713 47.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.1e-132 477.2 712 46.9
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.6e-132 476.5 712 46.9
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.0e-131 473.4 725 43.9
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 3.9e-131 473.0 708 45.2
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 2.8e-129 466.8 714 46.2
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 2.5e-125 453.8 704 43.9
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 2.5e-125 453.8 667 49.3
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 2.0e-122 444.1 713 43.9
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 7.5e-122 442.2 642 47.0
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.7e-121 439.9 708 42.5
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.2e-119 434.9 661 44.2
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 4.5e-119 433.0 660 43.9
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.7e-118 431.0 639 46.0
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 4.0e-115 419.9 654 45.0
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.2e-115 419.5 725 41.4
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 7.5e-114 415.6 510 51.8
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 1.2e-111 408.3 747 41.0
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 4.4e-106 389.8 733 40.7
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 9.5e-101 372.1 728 42.0
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 8.9e-99 365.5 597 46.4
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 3.4e-98 363.6 725 40.7
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 2.4e-96 357.5 622 45.7
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 7.0e-96 355.9 586 46.9
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 7.0e-96 355.9 718 39.1
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.0e-95 354.4 587 44.1
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 2.3e-94 350.9 586 46.1
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.2e-92 345.1 712 37.9
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 3.6e-92 343.6 712 39.0
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 5.8e-90 336.3 625 44.0
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.1e-88 332.0 590 44.9
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.5e-85 321.6 590 44.1
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.9e-85 321.2 589 44.0
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 2.5e-85 320.9 585 41.5
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 6.2e-84 316.2 553 43.0
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 1.1e-83 315.5 589 40.6
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 2.3e-83 314.3 590 40.5
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 3.1e-83 313.9 589 40.6
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 6.8e-83 312.8 590 40.5
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.3e-78 298.5 485 41.6
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 4.4e-66 256.9 373 46.4
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 3.6e-60 237.3 581 34.9
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 4.8e-60 236.9 206 67.5
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 4.5e-58 230.3 772 31.6
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.2e-57 228.0 296 48.0
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.8e-54 218.4 223 61.0
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.8e-54 218.4 223 61.0
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 4.0e-51 207.2 802 31.0
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 2.2e-49 201.4 290 44.8
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 5.5e-48 196.8 422 37.0
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 1.1e-45 189.1 188 63.3
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 2.5e-45 188.0 198 60.1
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.3e-44 185.7 797 27.6
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 3.8e-41 174.1 581 30.1
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 3.9e-38 164.1 694 28.7
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 6.9e-35 153.3 597 31.5
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 2.3e-30 138.3 153 55.6
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 3.9e-30 137.5 125 56.8
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 3.9e-30 137.5 125 56.8
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 1.2e-26 125.9 230 40.4
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 5.9e-26 123.6 119 55.5
CAN.G300.4 Capsicum annuum HOM05D000541 ORTHO05D000137 7.2e-24 116.7 85 72.9
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 1.2e-23 115.9 207 44.4
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.7e-23 114.8 161 42.2
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 3.6e-23 114.4 160 43.1
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 9.7e-21 106.3 102 59.8
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 4.1e-19 100.9 160 40.0
CAN.G125.22 Capsicum annuum HOM05D001472 ORTHO05D004439 5.9e-18 97.1 95 56.8
CAN.G1307.1 Capsicum annuum HOM05D001472 ORTHO05D004439 1.0e-17 96.3 71 73.2
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 4.2e-16 90.9 59 79.7
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 2.3e-14 85.1 135 41.5
CAN.G578.12 Capsicum annuum HOM05D001816 ORTHO05D004439 8.8e-14 83.2 57 75.4
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 5.9e-10 70.5 65 58.5
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 3.8e-09 67.8 65 55.4
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 5.5e-08 63.9 85 40.0
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 5.5e-08 63.9 85 40.0
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 5.2e-06 57.4 396 28.0
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 8.8e-06 56.6 327 30.0


User provided reference genes

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