Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 0.0e+00 2023.1 1175 100.0
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 0.0e+00 1938.7 1176 95.6
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 0.0e+00 1849.3 1175 93.0
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 0.0e+00 1429.8 1189 77.4
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 0.0e+00 1248.4 1224 71.8
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 0.0e+00 1236.9 1256 70.1
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 0.0e+00 1145.6 1222 64.5
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 2.8e-113 414.5 1276 31.7
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 4.9e-110 403.7 1224 36.3
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 3.1e-96 357.8 1004 33.3
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 6.9e-96 356.7 1002 32.5
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 8.2e-89 333.2 1003 33.5
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 5.1e-83 313.9 997 32.3
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 7.7e-79 300.1 992 32.2
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 3.8e-78 297.7 992 32.1
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 1.6e-76 292.4 977 31.6
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 3.0e-75 288.1 991 30.6
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 1.5e-74 285.8 1007 31.1
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.1e-72 279.6 964 30.3
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.2e-71 276.2 994 31.4
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 3.1e-64 251.5 988 29.6
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 1.8e-59 235.7 1269 29.2
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 3.4e-58 231.5 1005 28.9
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 7.5e-58 230.3 611 33.2
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 2.2e-57 228.8 990 29.5
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.8e-56 225.7 975 29.9
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.8e-56 225.7 935 29.4
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 2.0e-55 222.2 1027 29.2
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 2.5e-53 215.3 999 29.5
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 1.6e-52 212.6 1012 27.8
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 3.6e-52 211.5 977 28.1
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 8.0e-52 210.3 1020 27.4
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 8.0e-52 210.3 1033 27.9
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 6.8e-51 207.2 1013 27.3
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 8.8e-51 206.8 909 29.3
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 5.7e-50 204.1 1013 27.0
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 9.8e-50 203.4 1001 27.5
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 9.8e-50 203.4 972 28.8
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.7e-49 201.4 1021 27.4
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 8.3e-49 200.3 959 28.1
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 3.8e-46 191.4 890 28.0
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 1.1e-45 189.9 1010 26.5
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.3e-45 188.3 994 27.9
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 1.4e-43 183.0 990 26.4
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 3.0e-43 181.8 988 27.3
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 4.0e-43 181.4 551 32.5
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 8.9e-43 180.3 678 30.1
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 1.5e-42 179.5 1047 27.3
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 1.5e-42 179.5 994 27.7
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.4e-42 178.3 993 27.4
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 5.7e-42 177.6 457 35.4
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 9.8e-42 176.8 989 26.4
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 1.7e-41 176.0 999 27.2
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 1.8e-40 172.6 965 25.9
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 3.2e-40 171.8 1015 26.2
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 7.8e-39 167.2 989 27.3
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.8e-35 156.0 1006 26.5
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 4.0e-35 154.8 1021 26.2
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 4.0e-35 154.8 1013 26.9
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 4.9e-33 147.9 969 26.3
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 6.4e-33 147.5 912 25.9
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 4.1e-32 144.8 1059 25.0
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 2.7e-31 142.1 572 26.9
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 3.0e-30 138.7 964 25.9
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 5.0e-30 137.9 971 25.3
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 8.6e-30 137.1 545 28.3
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 2.5e-29 135.6 959 24.1
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 9.5e-29 133.7 961 26.1
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 1.2e-28 133.3 462 29.9
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.6e-28 132.9 957 24.1
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 3.1e-27 128.6 435 31.5
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 6.8e-27 127.5 586 28.0
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 7.5e-26 124.0 955 25.8
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 7.5e-26 124.0 955 25.8
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 1.3e-25 123.2 531 26.7
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 2.2e-25 122.5 1019 25.1
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 2.4e-24 119.0 999 24.2
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 9.2e-24 117.1 497 26.6
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 4.3e-21 108.2 915 23.8
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.6e-20 105.1 296 30.7
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 4.7e-20 104.8 284 31.0
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 4.7e-20 104.8 967 24.0
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 2.4e-19 102.4 331 31.1
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 2.6e-18 99.0 1028 22.9
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 3.4e-18 98.6 1015 23.2
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 9.9e-18 97.1 280 30.4
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 9.9e-18 97.1 1079 23.8
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 9.9e-18 97.1 630 24.1
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 6.4e-17 94.4 253 30.8
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 1.1e-16 93.6 948 22.8
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 1.1e-16 93.6 160 41.2
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 1.4e-16 93.2 922 23.5
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 3.2e-16 92.0 990 23.6
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 5.4e-16 91.3 882 23.6
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 1.2e-15 90.1 289 29.8
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 6.0e-15 87.8 605 26.4
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 6.0e-15 87.8 1075 24.3
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.5e-13 83.2 677 24.8
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 1.9e-13 82.8 240 30.4
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 2.5e-13 82.4 252 29.4
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 9.6e-13 80.5 432 26.4
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.8e-12 79.0 107 43.9
Nitab4.5_0006821g0050 Nicotiana tabacum HOM05D001799 ORTHO05D001655 3.6e-12 78.6 64 65.6
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 8.1e-12 77.4 1064 22.3
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.1e-11 77.0 231 32.5
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 4.0e-11 75.1 116 41.4
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.2e-10 73.6 1000 22.2
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 7.6e-10 70.9 188 30.9
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 7.6e-10 70.9 430 24.2
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 1.3e-09 70.1 191 29.3
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 1.7e-09 69.7 183 29.0
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 1.7e-09 69.7 183 29.0
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 2.2e-09 69.3 194 28.4
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 6.4e-09 67.8 1013 22.8
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 8.4e-09 67.4 270 24.8
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 1.1e-08 67.0 259 28.2
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 1.1e-08 67.0 183 29.0
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 1.1e-08 67.0 183 29.0
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 1.9e-08 66.2 183 29.0
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.4e-08 65.9 292 29.8
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 3.2e-08 65.5 189 27.0
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 3.2e-08 65.5 835 22.4
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 2.7e-07 62.4 1012 21.0
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 2.7e-07 62.4 196 25.5
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 4.6e-07 61.6 182 29.7
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 4.6e-07 61.6 182 29.7
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 4.6e-07 61.6 266 25.6
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 6.0e-07 61.2 277 26.0
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 6.0e-07 61.2 226 27.4
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 6.0e-07 61.2 194 28.9
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 6.0e-07 61.2 277 26.0
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 6.0e-07 61.2 277 26.0
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 6.0e-07 61.2 226 27.4
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 7.8e-07 60.8 468 24.8
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 1.3e-06 60.1 427 23.9
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 3.0e-06 58.9 228 26.8
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 5.1e-06 58.2 457 23.6


User provided reference genes

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