Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 1.9e-83 312.4 146 100.0
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 5.4e-83 310.8 146 99.3
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 5.4e-83 310.8 146 99.3
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 1.2e-79 299.7 146 95.2
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 4.7e-79 297.7 146 93.2
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 6.2e-79 297.4 146 93.2
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 9.2e-75 283.5 146 88.4
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 2.1e-74 282.3 137 94.9
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.4e-70 268.9 146 84.2
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 3.1e-70 268.5 146 84.2
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 1.5e-69 266.2 146 82.2
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 2.6e-69 265.4 146 82.2
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 4.4e-69 264.6 146 83.6
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 7.6e-69 263.8 146 82.2
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 1.3e-68 263.1 146 82.9
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 1.3e-68 263.1 146 80.8
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.7e-68 262.7 150 82.7
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 1.7e-68 262.7 147 81.0
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 3.8e-68 261.5 146 82.9
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 3.8e-68 261.5 146 82.9
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 3.8e-68 261.5 146 80.8
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 3.8e-68 261.5 146 78.1
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 4.9e-68 261.2 146 81.5
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 8.4e-68 260.4 147 83.0
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 8.4e-68 260.4 146 78.8
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 1.1e-67 260.0 146 80.1
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 1.4e-67 259.6 146 78.8
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 2.4e-67 258.8 147 79.6
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 3.2e-67 258.5 146 80.8
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 4.2e-67 258.1 140 83.6
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 5.4e-67 257.7 146 79.5
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 7.1e-67 257.3 146 77.4
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 1.2e-66 256.5 147 79.6
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 2.7e-66 255.4 146 79.5
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 3.5e-66 255.0 151 80.8
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 4.6e-66 254.6 147 79.6
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 7.8e-66 253.8 146 78.1
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 1.3e-65 253.1 147 78.9
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.7e-65 252.7 146 79.5
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.7e-65 252.7 147 77.6
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.7e-65 252.7 147 77.6
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 2.3e-65 252.3 147 78.9
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 2.3e-65 252.3 146 78.1
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.3e-65 252.3 147 78.2
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 3.0e-65 251.9 146 79.5
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 5.1e-65 251.1 146 78.8
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 6.6e-65 250.8 146 76.0
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.1e-64 250.0 148 77.0
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.1e-64 250.0 148 77.7
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 1.5e-64 249.6 145 75.9
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.9e-64 249.2 146 75.3
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 2.5e-64 248.8 146 75.3
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 3.3e-64 248.4 147 78.9
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 3.3e-64 248.4 147 78.9
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 4.3e-64 248.1 146 78.1
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 5.6e-64 247.7 146 75.3
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 7.3e-64 247.3 146 78.1
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.3e-63 246.5 146 74.0
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 1.3e-63 246.5 146 75.3
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 1.6e-63 246.1 150 79.3
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.6e-63 246.1 146 76.0
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 2.8e-63 245.4 148 79.1
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 2.8e-63 245.4 148 77.0
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 3.6e-63 245.0 146 76.0
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 8.1e-63 243.8 146 76.7
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 75.3
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 1.4e-62 243.0 146 75.3
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.4e-62 243.0 146 75.3
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 2.4e-62 242.3 148 75.7
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 2.4e-62 242.3 146 75.3
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 3.1e-62 241.9 148 77.7
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 6.9e-62 240.7 147 73.5
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 9.0e-62 240.4 146 73.3
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 9.0e-62 240.4 145 73.8
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 9.0e-62 240.4 146 74.0
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.2e-61 240.0 147 74.8
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 74.7
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 73.3
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 73.3
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 74.0
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 74.0
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 2.0e-61 239.2 148 75.7
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 2.0e-61 239.2 146 74.0
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.6e-61 238.8 132 81.8
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.6e-61 238.8 132 81.8
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 2.6e-61 238.8 146 74.0
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.4e-61 238.4 132 82.6
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 3.4e-61 238.4 146 76.7
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 4.5e-61 238.0 146 73.3
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 5.8e-61 237.7 148 73.6
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 9.9e-61 236.9 147 72.8
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.3e-60 236.5 147 72.8
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 1.3e-60 236.5 146 72.6
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 1.7e-60 236.1 146 73.3
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.9e-60 235.3 146 73.3
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 3.8e-60 235.0 147 73.5
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 1.9e-59 232.6 149 73.8
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.9e-59 232.6 147 72.8
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.4e-59 232.3 146 74.7
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 2.4e-59 232.3 148 73.6
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 4.2e-59 231.5 148 75.0
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 9.3e-59 230.3 144 70.8
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 9.3e-59 230.3 146 67.8
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.2e-58 229.9 149 72.5
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.6e-58 229.6 149 72.5
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 3.5e-58 228.4 146 69.2
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 7.9e-58 227.3 147 71.4
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 7.9e-58 227.3 147 71.4
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 1.3e-57 226.5 131 74.8
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.8e-57 226.1 130 79.2
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.0e-57 225.3 140 72.1
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 3.9e-57 224.9 150 72.0
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 5.1e-57 224.6 150 73.3
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 6.7e-57 224.2 147 74.8
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-56 223.4 147 70.7
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 1.1e-56 223.4 147 70.7
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 1.1e-56 223.4 133 75.9
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 3.3e-56 221.9 146 66.4
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 9.6e-56 220.3 117 83.8
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 1.3e-55 219.9 125 79.2
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.6e-55 219.5 154 73.4
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 8.1e-55 217.2 147 69.4
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 5.3e-54 214.5 147 68.0
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 2.6e-53 212.2 151 66.9
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 2.6e-53 212.2 146 66.4
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 3.4e-53 211.8 132 75.0
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 5.8e-53 211.1 150 66.7
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 1.7e-52 209.5 150 70.0
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 2.2e-52 209.1 150 66.7
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 2.2e-52 209.1 150 66.7
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 1.1e-51 206.8 150 67.3
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 7.1e-51 204.1 150 66.7
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.6e-50 203.0 150 66.0
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.6e-50 203.0 150 66.0
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.6e-50 203.0 150 66.0
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 1.8e-49 199.5 146 65.1
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 5.1e-49 198.0 146 63.7
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-48 196.8 148 64.9
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-48 196.8 148 64.9
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.1e-48 196.8 148 64.9
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 7.4e-48 194.1 123 70.7
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 9.6e-48 193.7 134 69.4
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 2.0e-45 186.0 146 63.7
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 4.2e-43 178.3 146 63.0
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 1.6e-39 166.4 101 74.3
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 4.8e-39 164.9 101 74.3
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.4e-38 163.3 97 80.4
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 7.7e-37 157.5 146 58.2
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 1.8e-33 146.4 138 55.1
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 6.7e-33 144.4 135 52.6
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 8.8e-25 117.5 68 77.9
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 5.7e-24 114.8 127 53.5
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 1.7e-23 113.2 166 40.4
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 3.1e-22 109.0 75 69.3
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 8.8e-17 90.9 90 47.8
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 7.2e-11 71.2 98 33.7
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 9.4e-11 70.9 37 78.4
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 3.3e-08 62.4 76 48.7
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 1.1e-06 57.4 77 37.7


User provided reference genes

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