Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 8.4e-180 634.0 439 100.0
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 6.2e-167 591.3 439 95.0
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.5e-157 560.1 447 87.0
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 1.1e-126 457.6 454 71.4
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.5e-123 447.2 449 71.9
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.4e-121 440.7 461 73.1
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 1.3e-100 370.9 250 80.8
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 3.1e-97 359.8 368 56.5
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 4.4e-96 355.9 358 61.2
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 1.3e-95 354.4 343 58.0
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 2.9e-95 353.2 421 56.5
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 1.9e-94 350.5 266 70.7
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 3.2e-94 349.7 364 60.2
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 4.1e-94 349.4 453 55.6
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 5.4e-94 349.0 248 71.8
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 5.4e-94 349.0 354 61.0
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 9.2e-94 348.2 255 70.6
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.6e-93 347.4 255 71.0
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.6e-93 347.4 421 56.5
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.6e-93 347.4 314 61.8
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.7e-93 346.7 255 69.4
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.7e-93 346.7 308 61.0
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.5e-93 346.3 252 72.2
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 1.3e-92 344.4 254 69.7
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.3e-92 343.6 255 70.2
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 5.0e-92 342.4 251 68.5
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 5.0e-92 342.4 251 68.9
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 5.0e-92 342.4 251 68.5
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 5.0e-92 342.4 251 69.3
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 8.6e-92 341.7 245 72.2
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 1.5e-91 340.9 256 69.1
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 1.9e-91 340.5 353 55.0
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 2.5e-91 340.1 453 53.4
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.5e-91 340.1 252 71.0
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 3.3e-91 339.7 350 64.0
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 4.3e-91 339.3 251 68.1
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 1.6e-90 337.4 248 68.1
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 1.6e-90 337.4 249 69.1
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 2.1e-90 337.0 251 67.3
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 2.8e-90 336.7 241 72.2
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 2.8e-90 336.7 244 71.3
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 2.8e-90 336.7 255 68.2
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 3.6e-90 336.3 367 54.5
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 4.7e-90 335.9 242 73.6
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 6.2e-90 335.5 246 72.0
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 1.1e-89 334.7 251 67.3
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 1.1e-89 334.7 361 55.4
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.1e-89 334.7 251 68.1
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.8e-89 334.0 256 66.8
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.8e-89 334.0 256 66.8
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 2.3e-89 333.6 248 67.7
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 4.0e-89 332.8 249 68.7
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 6.8e-89 332.0 242 70.7
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 1.5e-88 330.9 256 66.0
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.5e-88 330.9 256 66.0
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 1.5e-88 330.9 239 71.5
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 1.5e-88 330.9 248 68.5
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 3.4e-88 329.7 256 66.0
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 4.4e-88 329.3 254 67.3
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 4.4e-88 329.3 247 68.8
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 5.8e-88 328.9 256 65.6
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 5.8e-88 328.9 251 67.7
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 7.5e-88 328.6 241 67.6
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 7.5e-88 328.6 353 57.2
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 9.8e-88 328.2 265 63.4
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 9.8e-88 328.2 256 65.6
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 9.8e-88 328.2 360 54.7
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 1.3e-87 327.8 369 53.7
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 1.7e-87 327.4 433 52.9
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 1.7e-87 327.4 247 70.4
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 2.2e-87 327.0 247 70.0
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 2.2e-87 327.0 254 65.7
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 2.2e-87 327.0 458 50.0
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 2.9e-87 326.6 250 66.8
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 3.7e-87 326.2 257 66.9
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 4.9e-87 325.9 445 53.7
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 6.4e-87 325.5 265 62.6
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 1.9e-86 323.9 249 65.9
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 1.9e-86 323.9 249 65.9
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 3.2e-86 323.2 251 66.5
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 3.2e-86 323.2 250 64.0
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 3.2e-86 323.2 248 66.9
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 4.1e-86 322.8 248 68.5
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 5.4e-86 322.4 252 66.7
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 9.2e-86 321.6 245 70.2
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.6e-85 320.9 238 68.1
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 2.7e-85 320.1 260 64.6
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 3.5e-85 319.7 254 64.2
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 6.0e-85 318.9 379 50.9
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 6.0e-85 318.9 248 66.5
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 7.8e-85 318.5 253 64.0
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 1.7e-84 317.4 360 55.0
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 3.9e-84 316.2 257 66.9
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 6.6e-84 315.5 255 66.3
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 1.9e-83 313.9 438 48.9
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 2.5e-83 313.5 440 51.8
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 3.6e-82 309.7 446 50.4
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.8e-81 307.4 254 63.8
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.8e-81 307.4 253 63.6
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 5.2e-81 305.8 413 51.3
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 8.9e-81 305.1 250 63.2
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 1.2e-80 304.7 244 65.6
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 2.6e-80 303.5 255 63.5
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 9.9e-80 301.6 237 64.6
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.3e-79 301.2 253 62.8
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 3.7e-79 299.7 444 49.8
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 4.1e-78 296.2 245 60.8
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 4.6e-77 292.7 242 60.7
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 7.8e-77 292.0 257 58.0
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 3.0e-76 290.0 247 63.2
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 3.0e-76 290.0 213 70.4
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.1e-75 288.1 231 62.3
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 4.3e-75 286.2 233 63.1
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 9.6e-75 285.0 258 60.1
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 4.2e-70 269.6 221 58.8
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 1.3e-68 264.6 243 58.8
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 3.2e-62 243.4 424 48.1
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 2.4e-57 227.3 243 48.1
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 2.4e-54 217.2 256 45.7
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.3e-47 194.9 358 42.2
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 2.3e-44 184.1 248 41.5
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 6.7e-44 182.6 246 41.9
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 3.3e-43 180.3 231 42.0
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 1.0e-39 168.7 229 38.4
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 2.3e-36 157.5 112 68.8
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 2.5e-35 154.1 247 35.6
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 8.2e-34 149.1 254 35.8
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 4.1e-33 146.7 133 58.6
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 3.4e-32 143.7 213 38.0
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.8e-28 131.3 219 33.3
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 4.3e-27 126.7 207 31.4
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 9.7e-27 125.6 87 66.7
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 6.3e-26 122.9 270 52.2
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 8.2e-26 122.5 227 34.8
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.9e-22 111.3 222 31.1
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 1.9e-22 111.3 147 40.1
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 1.2e-21 108.6 224 30.4
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 2.0e-19 101.3 220 32.7
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 1.8e-17 94.7 285 43.9
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 5.5e-14 83.2 126 40.5
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 3.6e-13 80.5 131 38.2
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 5.2e-12 76.6 67 52.2
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 3.3e-11 73.9 97 42.3
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 5.7e-11 73.2 108 38.0
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 9.7e-11 72.4 43 69.8
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 4.8e-10 70.1 73 45.2
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 2.4e-09 67.8 186 30.1
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 4.1e-09 67.0 55 49.1
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 1.2e-08 65.5 61 50.8
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 1.3e-07 62.0 130 32.3
MCO08G346 Micromonas commoda HOM05D004657 ORTHO05D005562 5.0e-07 60.1 132 29.5


User provided reference genes

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