Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 1.3e-108 396.4 198 100.0
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.9e-103 378.6 203 96.1
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.7e-85 318.9 201 84.1
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 3.1e-65 252.3 200 63.0
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 2.1e-53 213.0 206 55.3
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 5.1e-52 208.4 211 55.9
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.2e-48 197.2 192 57.3
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 8.8e-44 181.0 178 58.4
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.2e-42 176.4 183 55.2
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 5.5e-38 161.8 200 47.0
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.4e-36 157.1 214 44.9
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 3.0e-36 156.0 198 44.9
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 5.1e-36 155.2 213 44.1
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 5.1e-36 155.2 206 44.2
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 8.8e-36 154.5 201 46.3
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.5e-35 153.7 212 42.9
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 2.0e-35 153.3 197 44.7
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 7.4e-35 151.4 208 47.6
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 1.3e-34 150.6 200 45.0
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 1.3e-34 150.6 200 45.0
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.2e-34 149.8 213 42.7
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 2.2e-34 149.8 209 44.0
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 2.2e-34 149.8 200 45.0
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 2.2e-34 149.8 200 45.0
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 2.8e-34 149.4 200 45.0
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 3.7e-34 149.1 202 46.5
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 8.2e-34 147.9 196 41.8
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.1e-33 146.0 203 41.9
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 4.1e-33 145.6 201 43.8
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 5.3e-33 145.2 200 42.5
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 9.1e-33 144.4 212 41.0
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 1.6e-32 143.7 209 41.6
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 2.6e-32 142.9 199 42.2
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 4.5e-32 142.1 126 59.5
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 5.9e-32 141.7 209 41.6
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.7e-31 140.2 206 42.7
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 2.2e-31 139.8 206 42.7
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 8.5e-31 137.9 202 42.6
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 8.5e-31 137.9 143 54.5
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 1.5e-30 137.1 199 41.7
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 5.5e-30 135.2 217 40.1
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 9.4e-30 134.4 204 38.2
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 1.6e-29 133.7 210 36.2
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.6e-29 133.7 203 41.4
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 2.1e-29 133.3 215 41.9
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 2.7e-29 132.9 205 39.0
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 6.1e-29 131.7 137 55.5
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 8.0e-29 131.3 139 54.7
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 1.4e-28 130.6 199 39.2
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 1.4e-28 130.6 199 39.2
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 2.3e-28 129.8 196 36.7
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 2.3e-28 129.8 204 38.7
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 3.0e-28 129.4 231 38.5
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.0e-28 129.4 201 37.8
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 3.0e-28 129.4 199 38.7
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 4.0e-28 129.0 208 39.9
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 5.2e-28 128.6 201 37.8
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 6.7e-28 128.3 203 40.4
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 6.7e-28 128.3 201 37.3
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 6.7e-28 128.3 137 53.3
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 8.8e-28 127.9 190 37.4
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 1.1e-27 127.5 199 37.7
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-27 127.5 197 39.1
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 1.5e-27 127.1 202 37.6
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 1.5e-27 127.1 175 38.3
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.5e-27 127.1 201 38.3
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.0e-27 126.7 197 39.1
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.0e-27 126.7 197 39.1
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.6e-27 126.3 207 34.3
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.6e-27 126.3 140 55.0
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 3.3e-27 125.9 212 38.2
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 3.3e-27 125.9 207 38.6
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 3.3e-27 125.9 202 38.6
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 4.4e-27 125.6 203 37.4
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 4.4e-27 125.6 202 35.1
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 5.7e-27 125.2 202 34.7
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 5.7e-27 125.2 203 34.5
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 7.5e-27 124.8 200 38.0
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 7.5e-27 124.8 206 39.3
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 7.5e-27 124.8 206 39.3
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 9.7e-27 124.4 206 38.3
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 9.7e-27 124.4 202 35.6
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.3e-26 124.0 207 34.8
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 1.3e-26 124.0 203 36.5
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 1.3e-26 124.0 205 35.1
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.7e-26 123.6 211 36.0
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.2e-26 123.2 207 35.3
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 2.2e-26 123.2 204 41.2
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 2.2e-26 123.2 139 54.7
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.8e-26 122.9 207 35.7
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 2.8e-26 122.9 207 39.1
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 2.8e-26 122.9 202 36.1
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.8e-26 122.9 129 53.5
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 4.8e-26 122.1 140 55.0
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.1e-25 120.9 208 36.1
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 1.1e-25 120.9 209 33.0
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 1.4e-25 120.6 204 34.3
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 1.8e-25 120.2 205 33.7
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 2.4e-25 119.8 199 34.7
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 2.4e-25 119.8 157 43.9
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 2.4e-25 119.8 200 33.5
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 2.4e-25 119.8 202 33.2
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 3.1e-25 119.4 200 37.5
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 4.1e-25 119.0 206 33.0
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 5.3e-25 118.6 236 35.6
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 5.3e-25 118.6 236 35.6
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 7.0e-25 118.2 201 35.3
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 7.0e-25 118.2 201 35.3
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 7.0e-25 118.2 201 35.3
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 1.6e-24 117.1 201 35.3
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 1.6e-24 117.1 203 34.0
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 1.6e-24 117.1 200 36.0
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 2.0e-24 116.7 202 35.6
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 2.7e-24 116.3 202 33.2
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 4.5e-24 115.5 200 35.0
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 4.5e-24 115.5 207 36.2
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 5.9e-24 115.2 204 35.8
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 5.9e-24 115.2 202 34.7
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 7.7e-24 114.8 203 33.5
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 7.7e-24 114.8 206 35.9
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 1.7e-23 113.6 208 34.6
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 2.2e-23 113.2 203 38.9
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 2.2e-23 113.2 169 43.2
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 2.9e-23 112.8 180 37.8
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 3.8e-23 112.5 204 36.3
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.8e-23 112.5 203 39.4
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 5.0e-23 112.1 174 35.6
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 5.0e-23 112.1 206 32.0
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 5.0e-23 112.1 202 36.1
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 5.0e-23 112.1 201 37.3
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 6.5e-23 111.7 215 34.4
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 6.5e-23 111.7 206 32.0
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 6.5e-23 111.7 206 32.0
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 6.5e-23 111.7 202 36.1
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 6.5e-23 111.7 202 38.1
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 8.5e-23 111.3 210 32.4
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.1e-22 110.9 210 33.3
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 1.1e-22 110.9 200 33.5
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 1.5e-22 110.5 202 32.7
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 1.5e-22 110.5 202 36.6
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.5e-22 110.5 180 40.6
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 1.9e-22 110.2 206 31.6
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 1.9e-22 110.2 203 33.0
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 1.9e-22 110.2 199 33.2
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.9e-22 110.2 203 37.4
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 2.5e-22 109.8 207 35.3
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 2.5e-22 109.8 171 35.7
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 3.2e-22 109.4 177 39.0
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 7.2e-22 108.2 208 33.7
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 7.2e-22 108.2 88 62.5
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 9.4e-22 107.8 207 32.4
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 9.4e-22 107.8 201 32.3
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 1.2e-21 107.5 210 35.2
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 1.2e-21 107.5 203 37.4
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 1.2e-21 107.5 202 32.7
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 2.1e-21 106.7 226 36.3
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 2.1e-21 106.7 208 32.7
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.7e-21 106.3 179 38.0
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 3.6e-21 105.9 208 30.8
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 4.7e-21 105.5 205 37.6
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 6.1e-21 105.1 205 37.6
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 6.1e-21 105.1 208 31.7
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 8.0e-21 104.8 198 35.9
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.0e-20 104.4 208 33.2
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 1.0e-20 104.4 107 50.5
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 1.4e-20 104.0 181 33.7
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 3.0e-20 102.8 202 30.7
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 1.5e-19 100.5 200 34.0
Nitab4.5_0000897g0040 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.5e-19 100.5 101 59.4
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 5.7e-19 98.6 199 31.2
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 7.5e-19 98.2 203 31.0
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.4e-17 93.2 106 41.5
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 7.0e-17 91.7 192 35.4
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 7.0e-17 91.7 145 39.3
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 3.5e-16 89.4 176 33.0
Peaxi162Scf00212g00104 Petunia axillaris HOM05D003474 ORTHO05D003971 3.5e-16 89.4 84 58.3
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 4.5e-16 89.0 205 31.2
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 8.5e-15 84.7 173 31.2
PGSC0003DMG400001889 Solanum tuberosum HOM05D003474 ORTHO05D003971 9.4e-14 81.3 87 57.5
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 2.7e-13 79.7 198 27.8
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 3.6e-13 79.3 221 33.5
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 1.5e-11 73.9 167 31.7
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 3.4e-11 72.8 194 27.3
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 4.4e-11 72.4 96 38.5
CAN.G255.16 Capsicum annuum HOM05D002261 ORTHO05D002334 1.4e-09 67.4 104 40.4
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 1.4e-09 67.4 138 39.1
Zm00001eb109720 Zea mays HOM05D003474 ORTHO05D003971 4.1e-09 65.9 109 36.7
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 9.2e-09 64.7 87 39.1


User provided reference genes

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