Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 1.2e-43 179.5 90 100.0
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.8e-29 131.7 81 82.7
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 1.4e-28 129.4 67 92.5
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 2.3e-28 128.6 67 92.5
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 5.2e-28 127.5 67 89.6
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 1.5e-27 125.9 67 89.6
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 1.1e-25 119.8 67 85.1
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 1.7e-23 112.5 70 78.6
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 1.7e-23 112.5 67 76.1
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 2.3e-23 112.1 69 73.9
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 2.3e-23 112.1 64 79.7
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 3.0e-23 111.7 64 81.2
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 3.9e-23 111.3 64 79.7
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 3.9e-23 111.3 64 79.7
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 3.9e-23 111.3 64 81.2
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 3.9e-23 111.3 64 82.8
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 3.9e-23 111.3 64 81.2
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 5.1e-23 110.9 69 76.8
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 5.1e-23 110.9 68 80.9
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 6.6e-23 110.5 67 77.6
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 6.6e-23 110.5 70 72.9
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 6.6e-23 110.5 64 79.7
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 6.6e-23 110.5 67 76.1
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 6.6e-23 110.5 67 76.1
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 8.6e-23 110.2 68 76.5
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 8.6e-23 110.2 68 77.9
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 1.1e-22 109.8 71 73.2
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 1.1e-22 109.8 80 67.5
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 1.1e-22 109.8 67 80.6
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 1.9e-22 109.0 64 78.1
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 1.9e-22 109.0 64 76.6
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 1.9e-22 109.0 67 76.1
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 1.9e-22 109.0 64 76.6
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 2.5e-22 108.6 64 76.6
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 3.3e-22 108.2 64 76.6
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 3.3e-22 108.2 64 76.6
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 3.3e-22 108.2 64 76.6
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 3.3e-22 108.2 64 76.6
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 3.3e-22 108.2 67 73.1
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 3.3e-22 108.2 68 77.9
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 4.3e-22 107.8 64 75.0
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 4.3e-22 107.8 87 64.4
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 4.3e-22 107.8 64 76.6
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 4.3e-22 107.8 64 78.1
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 5.6e-22 107.5 64 79.7
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 5.6e-22 107.5 64 78.1
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 7.3e-22 107.1 64 76.6
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 7.3e-22 107.1 64 76.6
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 7.3e-22 107.1 64 76.6
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 9.5e-22 106.7 64 79.7
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 9.5e-22 106.7 64 76.6
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 1.2e-21 106.3 64 76.6
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 1.2e-21 106.3 64 76.6
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 1.2e-21 106.3 64 75.0
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 1.2e-21 106.3 67 74.6
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 1.2e-21 106.3 64 76.6
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 1.6e-21 105.9 70 72.9
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 1.6e-21 105.9 65 70.8
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 1.6e-21 105.9 84 60.7
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 1.6e-21 105.9 64 75.0
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 1.6e-21 105.9 64 76.6
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.1e-21 105.5 64 75.0
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.1e-21 105.5 64 75.0
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 2.1e-21 105.5 64 76.6
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 2.1e-21 105.5 68 75.0
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 2.1e-21 105.5 64 78.1
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.8e-21 105.1 64 75.0
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 2.8e-21 105.1 67 68.7
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 3.6e-21 104.8 69 68.1
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 3.6e-21 104.8 65 70.8
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 3.6e-21 104.8 67 73.1
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 3.6e-21 104.8 64 76.6
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 3.6e-21 104.8 64 76.6
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 3.6e-21 104.8 64 73.4
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 4.7e-21 104.4 75 66.7
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 4.7e-21 104.4 67 73.1
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 4.7e-21 104.4 64 75.0
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 6.2e-21 104.0 69 71.0
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 6.2e-21 104.0 67 73.1
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 6.2e-21 104.0 64 75.0
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 6.2e-21 104.0 67 71.6
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 6.2e-21 104.0 64 73.4
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 8.1e-21 103.6 67 71.6
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 8.1e-21 103.6 77 66.2
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 1.1e-20 103.2 67 73.1
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 1.1e-20 103.2 67 73.1
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 1.1e-20 103.2 67 73.1
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 1.1e-20 103.2 64 73.4
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 1.1e-20 103.2 67 71.6
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 1.1e-20 103.2 64 73.4
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 1.4e-20 102.8 64 73.4
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 1.4e-20 102.8 64 73.4
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 1.4e-20 102.8 67 71.6
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 1.8e-20 102.4 67 71.6
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 1.8e-20 102.4 64 73.4
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 1.8e-20 102.4 64 75.0
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 1.8e-20 102.4 73 63.0
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 2.4e-20 102.1 87 62.1
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 2.4e-20 102.1 64 73.4
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 3.1e-20 101.7 68 72.1
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 3.1e-20 101.7 81 64.2
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 4.0e-20 101.3 77 63.6
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 4.0e-20 101.3 64 71.9
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 5.2e-20 100.9 67 71.6
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 5.2e-20 100.9 67 71.6
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 5.2e-20 100.9 67 71.6
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 5.2e-20 100.9 67 71.6
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 5.2e-20 100.9 64 73.4
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 5.2e-20 100.9 64 73.4
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 5.2e-20 100.9 64 73.4
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 8.9e-20 100.1 64 73.4
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 8.9e-20 100.1 64 70.3
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 1.2e-19 99.8 64 70.3
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 1.2e-19 99.8 67 70.1
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 1.2e-19 99.8 67 70.1
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 1.2e-19 99.8 67 70.1
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 1.2e-19 99.8 67 70.1
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 1.2e-19 99.8 67 70.1
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 1.2e-19 99.8 67 70.1
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 1.2e-19 99.8 67 70.1
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 1.2e-19 99.8 67 70.1
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 1.5e-19 99.4 67 70.1
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 1.5e-19 99.4 81 60.5
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 1.5e-19 99.4 64 70.3
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 2.0e-19 99.0 64 73.4
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 2.6e-19 98.6 64 68.8
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 2.6e-19 98.6 64 68.8
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 3.4e-19 98.2 67 67.2
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 3.4e-19 98.2 64 68.8
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 3.4e-19 98.2 64 70.3
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 4.4e-19 97.8 64 65.6
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 4.4e-19 97.8 71 64.8
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 4.4e-19 97.8 64 67.2
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 7.6e-19 97.1 64 68.8
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 7.6e-19 97.1 68 69.1
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 7.6e-19 97.1 77 62.3
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 9.9e-19 96.7 67 68.7
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 2.9e-18 95.1 68 67.6
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 2.9e-18 95.1 67 65.7
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 4.9e-18 94.4 64 70.3
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 6.4e-18 94.0 64 67.2
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 8.4e-18 93.6 64 65.6
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 1.4e-17 92.8 64 64.1
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 3.2e-17 91.7 70 62.9
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 4.2e-17 91.3 67 65.7
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 7.1e-17 90.5 64 68.8
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 2.1e-16 89.0 76 59.2
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 4.6e-16 87.8 60 66.7
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 3.3e-14 81.6 48 75.0
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 7.3e-14 80.5 53 71.7
HanXRQChr14g0451651 Helianthus annuus HOM05D004126 ORTHO05D004818 1.2e-13 79.7 48 70.8
Haze_23434 Corylus avellana HOM05D004126 ORTHO05D004818 2.1e-13 79.0 50 70.0
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 2.1e-13 79.0 50 70.0
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 2.1e-13 79.0 50 74.0
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 2.8e-13 78.6 53 69.8
SEGI_11030 Sequoiadendron giganteum HOM05D004126 ORTHO05D004818 1.4e-12 76.3 50 72.0
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 1.4e-12 76.3 50 70.0
Os05g0457000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.8e-12 75.9 59 61.0
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.4e-12 75.5 50 72.0
CDE04G1551 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 1.2e-11 73.2 69 55.1
CDE02G2464 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 3.4e-11 71.6 69 55.1
DCAR_010375 Daucus carota HOM05D004126 ORTHO05D004818 9.9e-11 70.1 48 75.0
C08p30760 Brassica napus HOM05D004126 ORTHO05D004818 1.3e-10 69.7 54 64.8
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 3.8e-10 68.2 48 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2832 Anthoceros agrestis HOM05D004126 ORTHO05D004818 1.1e-09 66.6 57 50.9
PSO384G1920 Papaver somniferum HOM05D004126 ORTHO05D004818 9.3e-09 63.5 58 53.4
BcaC07g41056 Brassica carinata HOM05D004126 ORTHO05D004818 4.6e-08 61.2 47 63.8
Mapoly0085s0067 Marchantia polymorpha HOM05D004126 ORTHO05D004818 4.6e-08 61.2 56 53.6
Aqoxy3G03824 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 8.7e-07 57.0 44 65.9


User provided reference genes

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