Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 8.9e-262 906.4 447 100.0
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 2.4e-259 898.3 447 99.1
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 4.5e-229 797.7 451 88.9
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 3.8e-212 741.5 450 84.9
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 3.9e-209 731.5 455 83.3
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 1.3e-207 726.5 450 82.0
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.1e-206 723.4 433 83.6
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 1.1e-206 723.4 424 85.1
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.4e-206 723.0 433 83.4
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 1.4e-206 723.0 424 85.1
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 3.1e-206 721.8 435 83.4
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 4.1e-206 721.5 424 84.4
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 6.9e-206 720.7 450 80.9
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 2.0e-205 719.2 413 86.2
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 2.0e-205 719.2 445 80.4
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 2.6e-205 718.8 445 81.3
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.4e-205 718.4 447 80.5
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 7.7e-205 717.2 426 83.3
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 1.3e-204 716.5 424 84.9
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 2.9e-204 715.3 431 82.6
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 2.9e-204 715.3 431 83.5
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 3.8e-204 714.9 445 80.7
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 5.0e-204 714.5 419 84.5
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 5.0e-204 714.5 442 81.9
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 5.0e-204 714.5 426 81.9
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 8.5e-204 713.8 413 85.7
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 3.2e-203 711.8 445 80.0
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 3.2e-203 711.8 445 80.7
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 4.2e-203 711.4 424 83.7
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 7.2e-203 710.7 445 79.8
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 1.6e-202 709.5 445 80.0
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 2.1e-202 709.1 424 83.0
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 2.1e-202 709.1 422 82.0
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 2.7e-202 708.8 446 79.8
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 6.1e-202 707.6 423 82.7
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 7.9e-202 707.2 424 82.1
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 1.8e-201 706.1 424 82.5
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 3.0e-201 705.3 425 83.3
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 8.8e-201 703.7 437 81.2
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 8.8e-201 703.7 421 82.9
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.1e-200 703.4 425 81.9
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 1.5e-200 703.0 434 81.6
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 2.6e-200 702.2 424 80.9
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 3.3e-200 701.8 449 78.2
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 1.3e-199 699.9 431 81.7
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 1.7e-199 699.5 426 81.9
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 3.7e-199 698.4 446 78.9
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 4.8e-199 698.0 424 81.8
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 1.1e-198 696.8 405 84.4
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 2.4e-198 695.7 381 88.2
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 3.1e-198 695.3 450 77.8
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 4.1e-198 694.9 431 80.7
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 5.3e-198 694.5 381 88.5
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 9.1e-198 693.7 407 84.0
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.2e-197 693.3 447 77.9
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 3.4e-197 691.8 381 87.9
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 3.4e-197 691.8 432 80.8
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 3.4e-197 691.8 381 87.7
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 4.5e-197 691.4 447 79.4
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 7.7e-197 690.6 416 81.7
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 1.0e-196 690.3 380 87.9
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 2.9e-196 688.7 431 80.0
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 6.5e-196 687.6 382 87.4
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 1.1e-195 686.8 382 87.2
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 1.4e-195 686.4 407 82.3
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 1.9e-195 686.0 426 80.8
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 5.5e-195 684.5 424 81.1
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 1.6e-194 682.9 433 79.9
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 4.7e-194 681.4 383 86.9
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 8.0e-194 680.6 383 86.9
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 8.0e-194 680.6 442 77.8
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 1.4e-193 679.9 382 87.2
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 1.8e-193 679.5 382 87.2
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 3.3e-192 675.2 382 84.8
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 3.3e-192 675.2 385 84.9
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 4.4e-192 674.9 404 83.2
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 5.7e-192 674.5 441 78.7
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 3.7e-191 671.8 490 71.8
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 3.7e-191 671.8 401 82.3
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 3.7e-191 671.8 382 84.3
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 2.4e-190 669.1 362 90.3
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 2.1e-186 656.0 380 82.6
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 3.0e-185 652.1 381 83.7
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.7e-183 645.2 357 88.5
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 3.7e-183 645.2 433 76.0
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.5e-179 633.3 451 75.4
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 1.2e-178 630.2 382 81.4
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 2.6e-176 622.5 358 84.1
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 4.4e-176 621.7 425 76.0
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 2.8e-175 619.0 424 75.5
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 5.4e-174 614.8 332 90.7
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 4.2e-171 605.1 421 70.8
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.2e-168 597.0 332 88.0
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 1.4e-161 573.5 437 65.9
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 9.8e-160 567.4 381 70.9
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 9.8e-160 567.4 430 66.5
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 4.3e-155 552.0 384 75.8
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 1.4e-153 547.0 326 84.7
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 5.2e-153 545.0 394 67.0
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.9e-150 536.6 326 81.3
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 1.5e-147 526.9 296 86.8
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 6.4e-143 511.5 279 89.2
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 3.8e-135 485.7 304 78.6
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 2.4e-134 483.0 433 57.7
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 2.2e-127 459.9 279 81.7
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 6.4e-127 458.4 375 65.9
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 6.4e-127 458.4 284 81.0
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.9e-124 449.1 235 90.6
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.9e-124 449.1 235 90.6
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 9.6e-123 444.5 421 58.7
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 2.8e-122 443.0 332 69.0
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 3.5e-109 399.4 409 49.4
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 2.1e-93 347.1 242 76.0
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 2.3e-76 290.4 318 47.2
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 7.2e-62 242.3 337 42.4
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.6e-56 224.6 403 36.5
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 7.5e-51 205.7 341 37.0
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 7.8e-48 195.7 117 81.2
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 7.8e-48 195.7 380 35.0
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 4.3e-46 189.9 102 89.2
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 4.7e-45 186.4 349 33.8
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 5.8e-43 179.5 363 32.2
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.1e-41 175.3 100 86.0
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 2.5e-38 164.1 140 62.1
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 2.1e-37 161.0 126 66.7
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 4.7e-37 159.8 90 88.9
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 1.8e-20 104.8 51 88.2
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 3.0e-15 87.4 62 77.4
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 7.1e-09 66.2 38 86.8
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 1.6e-08 65.1 42 78.6
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 3.5e-08 63.9 160 28.1
MD09G1061200 Malus domestica HOM05D005960 ORTHO05D007537 7.3e-06 56.2 61 50.8


User provided reference genes

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