Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 1.0e-96 356.7 173 100.0
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 2.6e-92 342.0 168 98.2
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 8.6e-88 327.0 171 91.2
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 1.4e-85 319.7 172 86.0
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 4.0e-85 318.2 173 86.1
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 6.0e-65 251.1 157 73.2
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 1.0e-64 250.4 169 68.6
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 1.3e-64 250.0 172 68.0
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 1.8e-64 249.6 159 73.0
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 2.3e-64 249.2 150 76.7
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 3.9e-64 248.4 169 68.6
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 1.9e-63 246.1 158 70.9
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 2.5e-63 245.7 164 67.7
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 3.3e-63 245.4 159 69.8
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 5.6e-63 244.6 156 70.5
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 5.6e-63 244.6 156 70.5
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 5.6e-63 244.6 164 68.3
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 5.6e-63 244.6 163 68.7
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 9.6e-63 243.8 166 68.1
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 1.6e-62 243.0 156 71.2
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 1.6e-62 243.0 156 71.2
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 1.6e-62 243.0 164 67.1
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 1.6e-62 243.0 172 66.3
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 2.1e-62 242.7 159 69.2
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 2.8e-62 242.3 156 69.2
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 2.8e-62 242.3 161 68.9
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 3.7e-62 241.9 151 74.2
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 4.8e-62 241.5 174 67.8
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 4.8e-62 241.5 172 65.7
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 6.2e-62 241.1 156 68.6
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 6.2e-62 241.1 162 69.8
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 6.2e-62 241.1 165 68.5
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 1.1e-61 240.4 171 70.2
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 1.4e-61 240.0 156 68.6
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 1.4e-61 240.0 156 69.2
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 3.1e-61 238.8 165 66.1
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 3.1e-61 238.8 152 70.4
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 4.0e-61 238.4 157 69.4
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 6.9e-61 237.7 162 66.0
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 9.0e-61 237.3 150 71.3
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 9.0e-61 237.3 151 70.9
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 9.0e-61 237.3 163 67.5
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 1.2e-60 236.9 156 68.6
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 2.0e-60 236.1 159 67.3
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 2.6e-60 235.7 162 67.9
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 2.6e-60 235.7 150 72.0
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 4.5e-60 235.0 156 67.3
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 4.5e-60 235.0 164 62.8
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 4.5e-60 235.0 158 68.4
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 4.5e-60 235.0 153 71.2
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 7.6e-60 234.2 156 66.7
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 1.3e-59 233.4 163 65.0
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 1.7e-59 233.0 154 70.8
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 3.8e-59 231.9 149 69.8
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 4.9e-59 231.5 168 61.3
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 4.9e-59 231.5 149 69.8
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 8.4e-59 230.7 149 69.8
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 1.1e-58 230.3 154 68.8
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.1e-58 230.3 154 68.8
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 1.4e-58 229.9 173 64.2
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 1.9e-58 229.6 154 70.8
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 3.2e-58 228.8 170 65.3
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 5.5e-58 228.0 156 66.0
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 7.1e-58 227.6 150 69.3
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 9.3e-58 227.3 149 67.8
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.2e-57 226.9 154 68.2
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 1.2e-57 226.9 170 64.1
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 1.2e-57 226.9 161 64.6
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 1.6e-57 226.5 154 66.2
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 1.6e-57 226.5 151 68.2
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 2.1e-57 226.1 170 63.5
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 2.7e-57 225.7 162 64.8
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 2.7e-57 225.7 170 60.0
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 3.5e-57 225.3 149 68.5
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 4.6e-57 224.9 154 67.5
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 7.9e-57 224.2 149 69.1
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 1.8e-56 223.0 143 69.9
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 2.3e-56 222.6 165 64.2
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 3.0e-56 222.2 156 63.5
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 5.1e-56 221.5 158 60.1
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 1.5e-55 219.9 155 65.8
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 1.9e-55 219.5 144 68.1
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 3.3e-55 218.8 154 61.7
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 1.3e-54 216.9 169 62.1
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 6.2e-54 214.5 155 64.5
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 1.8e-53 213.0 144 63.9
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 4.1e-53 211.8 191 54.5
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 1.3e-51 206.8 161 62.7
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 2.9e-51 205.7 163 58.3
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 1.6e-49 199.9 188 56.9
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 3.7e-46 188.7 124 71.0
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 1.8e-45 186.4 150 54.0
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 5.3e-45 184.9 126 69.8
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 1.7e-43 179.9 177 52.0
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 5.0e-43 178.3 131 62.6
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 6.5e-43 177.9 132 62.9
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 9.4e-42 174.1 153 52.9
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 1.4e-40 170.2 122 62.3
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 1.3e-38 163.7 150 53.3
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 1.2e-33 147.1 148 50.7
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 1.8e-32 143.3 154 49.4
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 7.4e-31 137.9 92 64.1
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 9.1e-29 131.0 89 68.5
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-27 126.7 91 60.4
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 1.4e-24 117.1 114 52.6
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 6.7e-24 114.8 76 67.1
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 4.4e-23 112.1 69 73.9
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 4.0e-16 89.0 43 97.7
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 1.5e-10 70.5 50 62.0
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 1.6e-09 67.0 40 70.0
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 4.7e-09 65.5 37 75.7
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 3.0e-08 62.8 40 60.0
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 4.4e-07 58.9 63 46.0
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 1.7e-06 57.0 40 62.5


User provided reference genes

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