Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 9.1e-56 219.9 106 100.0
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 9.1e-56 219.9 106 100.0
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 4.7e-52 207.6 106 95.3
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 9.5e-45 183.3 125 76.8
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.6e-44 181.4 122 78.7
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.0e-43 178.3 120 77.5
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 4.4e-42 174.5 130 71.5
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 3.0e-35 151.8 117 69.2
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 1.5e-34 149.4 125 64.8
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.5e-34 149.4 126 65.1
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.6e-34 148.7 122 65.6
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.6e-34 148.7 123 65.0
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 2.6e-34 148.7 120 63.3
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.4e-34 148.3 118 66.9
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.4e-34 148.3 118 66.9
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 4.4e-34 147.9 125 64.0
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 9.8e-34 146.7 120 64.2
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.7e-33 146.0 127 63.8
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 3.7e-33 144.8 115 66.1
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 3.7e-33 144.8 118 61.9
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 6.4e-33 144.1 116 63.8
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.4e-32 142.9 123 60.2
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.4e-32 142.9 125 60.8
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.4e-32 142.9 122 61.5
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.4e-32 142.1 121 64.5
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.4e-32 142.1 121 64.5
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 2.4e-32 142.1 125 60.8
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 4.1e-32 141.4 115 63.5
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 7.0e-32 140.6 122 62.3
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 7.0e-32 140.6 121 64.5
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.6e-31 139.4 125 58.4
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 2.7e-31 138.7 132 56.8
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 2.7e-31 138.7 111 65.8
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 7.8e-31 137.1 111 64.9
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.3e-30 136.3 127 61.4
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 1.3e-30 136.3 134 58.2
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.3e-30 136.3 122 59.0
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.7e-30 136.0 127 61.4
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.7e-30 136.0 127 61.4
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.7e-30 136.0 126 57.1
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 3.9e-30 134.8 119 61.3
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 1.1e-29 133.3 132 54.5
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.5e-29 132.9 122 57.4
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.9e-29 132.5 122 58.2
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 4.3e-29 131.3 133 57.1
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 4.3e-29 131.3 133 57.1
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 5.6e-29 131.0 122 57.4
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 5.6e-29 131.0 135 56.3
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 7.3e-29 130.6 133 54.9
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 7.3e-29 130.6 123 55.3
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 9.5e-29 130.2 118 60.2
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 9.5e-29 130.2 114 61.4
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.2e-28 129.8 111 61.3
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.2e-28 129.8 109 61.5
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.2e-28 129.8 146 50.0
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.2e-28 129.8 133 54.1
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.2e-28 129.8 133 54.1
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.2e-28 129.8 133 54.1
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.6e-28 129.4 133 54.1
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.1e-28 129.0 133 54.9
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 2.1e-28 129.0 118 60.2
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 2.8e-28 128.6 121 58.7
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 2.8e-28 128.6 107 62.6
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.7e-28 127.9 133 54.1
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 8.0e-28 127.1 120 58.3
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.0e-27 126.7 125 55.2
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.0e-27 126.7 152 47.4
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.0e-27 126.7 126 55.6
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.3e-27 125.6 145 49.7
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.3e-27 125.6 153 46.4
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 8.9e-27 123.6 146 48.6
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 8.9e-27 123.6 120 56.7
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 1.2e-26 123.2 118 56.8
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.2e-26 123.2 119 56.3
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.2e-26 123.2 118 59.3
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.2e-26 123.2 121 56.2
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.5e-26 122.9 117 57.3
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-26 122.9 118 56.8
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.0e-26 122.5 121 57.0
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 3.4e-26 121.7 118 57.6
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 3.4e-26 121.7 118 57.6
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 3.4e-26 121.7 117 59.0
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 3.4e-26 121.7 119 60.5
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 3.4e-26 121.7 121 55.4
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.4e-26 121.3 120 55.8
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 4.4e-26 121.3 116 57.8
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 4.4e-26 121.3 117 57.3
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.5e-26 120.6 107 57.0
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 9.8e-26 120.2 120 55.0
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 9.8e-26 120.2 121 55.4
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.3e-25 119.8 123 56.9
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.3e-25 119.8 117 58.1
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.7e-25 119.4 121 54.5
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.7e-25 119.4 104 57.7
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 2.2e-25 119.0 108 58.3
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 2.2e-25 119.0 97 63.9
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 2.9e-25 118.6 120 54.2
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.9e-25 117.9 118 57.6
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 4.9e-25 117.9 120 57.5
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 6.4e-25 117.5 120 54.2
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.4e-24 116.3 125 52.8
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.4e-24 116.3 123 53.7
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-24 115.9 103 61.2
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 5.4e-24 114.4 114 55.3
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 9.2e-24 113.6 154 47.4
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.2e-23 113.2 132 48.5
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.2e-23 113.2 123 54.5
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 2.0e-23 112.5 142 47.9
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.7e-23 112.1 127 54.3
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 3.5e-23 111.7 120 53.3
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 6.0e-23 110.9 125 50.4
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 6.0e-23 110.9 132 50.0
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 7.8e-23 110.5 131 49.6
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 7.8e-23 110.5 138 50.7
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.3e-22 109.8 119 52.1
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.7e-22 109.4 116 50.9
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.3e-22 109.0 120 53.3
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.9e-22 108.2 119 55.5
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 3.9e-22 108.2 129 51.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 5.0e-22 107.8 134 50.0
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 5.0e-22 107.8 134 49.3
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 8.6e-22 107.1 136 50.0
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.5e-21 106.3 126 48.4
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 1.5e-21 106.3 127 49.6
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.9e-21 105.9 128 49.2
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.5e-21 105.5 136 48.5
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 4.3e-21 104.8 136 46.3
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.6e-21 104.4 133 48.9
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 5.6e-21 104.4 122 52.5
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 5.6e-21 104.4 138 46.4
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 5.6e-21 104.4 134 48.5
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.6e-20 102.8 140 46.4
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.6e-20 102.8 108 55.6
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.6e-20 102.8 108 55.6
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 2.1e-20 102.4 143 46.2
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 2.1e-20 102.4 143 46.2
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 2.8e-20 102.1 144 45.8
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 3.6e-20 101.7 118 50.0
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 3.6e-20 101.7 123 48.8
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 6.2e-20 100.9 122 48.4
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 8.1e-20 100.5 126 47.6
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 1.4e-19 99.8 136 43.4
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.8e-19 99.4 142 43.7
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 2.3e-19 99.0 114 49.1
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 4.0e-19 98.2 111 49.5
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 5.2e-19 97.8 137 43.1
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.2e-19 97.8 105 55.2
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 6.8e-19 97.4 130 46.2
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 6.8e-19 97.4 141 44.0
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 8.9e-19 97.1 121 46.3
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.2e-18 96.7 130 47.7
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 2.6e-18 95.5 137 43.1
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 2.6e-18 95.5 124 47.6
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 5.8e-18 94.4 123 48.0
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 9.8e-18 93.6 126 44.4
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 9.8e-18 93.6 126 46.8
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 9.8e-18 93.6 118 48.3
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.3e-17 93.2 119 46.2
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 2.9e-17 92.0 136 48.5
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 3.7e-17 91.7 121 46.3
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 6.4e-17 90.9 113 53.1
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 8.3e-17 90.5 122 43.4
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 1.6e-15 86.3 122 41.8
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.7e-14 82.8 116 46.6
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.1e-14 81.3 62 67.7
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 8.6e-14 80.5 103 45.6
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.5e-13 79.7 97 50.5
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 4.3e-13 78.2 103 44.7
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 9.5e-13 77.0 120 42.5
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.4e-11 73.2 100 51.0
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 3.1e-11 72.0 61 60.7
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 8.9e-11 70.5 86 48.8
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.5e-10 69.7 124 43.5
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 7.6e-10 67.4 126 38.9
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 7.6e-10 67.4 126 38.9
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 7.6e-10 67.4 76 51.3
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-09 66.6 111 44.1
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 1.3e-09 66.6 126 37.3
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 1.7e-09 66.2 126 38.1
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 3.8e-09 65.1 149 30.9
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-08 63.5 126 36.5
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 9.2e-08 60.5 116 36.2
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 4.6e-07 58.2 93 38.7
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 6.0e-07 57.8 72 44.4


User provided reference genes

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