Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g016120 Solanum pennellii HOM05D003413 ORTHO05D004197 1.1e-98 363.2 180 100.0
Solyc05g056160.3 Solanum lycopersicum HOM05D003413 ORTHO05D004197 1.1e-61 240.4 135 88.9
Sopen05g034570 Solanum pennellii HOM05D003413 ORTHO05D004197 1.1e-61 240.4 135 88.9
PGSC0003DMG400023337 Solanum tuberosum HOM05D003413 ORTHO05D004197 1.6e-60 236.5 134 88.1
PGSC0003DMG400014972 Solanum tuberosum HOM05D003413 ORTHO05D004197 2.3e-59 232.6 120 95.0
CAN.G694.91 Capsicum annuum HOM05D003413 ORTHO05D004197 7.4e-58 227.6 135 83.7
Nitab4.5_0000582g0200 Nicotiana tabacum HOM05D003413 ORTHO05D004197 7.4e-58 227.6 135 84.4
Peaxi162Scf00858g00310 Petunia axillaris HOM05D003413 ORTHO05D004197 1.3e-57 226.9 134 84.3
Nitab4.5_0012482g0010 Nicotiana tabacum HOM05D003413 ORTHO05D004197 2.2e-57 226.1 135 83.0
Nitab4.5_0004212g0060 Nicotiana tabacum HOM05D003413 ORTHO05D004197 8.2e-57 224.2 135 83.0
Lj3C1066T5 Lonicera japonica HOM05D003413 ORTHO05D004197 1.6e-52 209.9 135 78.5
Dinv10975 Davidia involucrata HOM05D003413 ORTHO05D004197 2.3e-51 206.1 134 77.6
SGA_v2.0_scaffold87G27141 Striga asiatica HOM05D003413 ORTHO05D004197 2.3e-51 206.1 135 75.6
EL10Ac6g13472 Beta vulgaris HOM05D003413 ORTHO05D004197 3.0e-51 205.7 134 76.1
AUR62005593 Chenopodium quinoa HOM05D003413 ORTHO05D004197 3.0e-51 205.7 134 76.1
AUR62024135 Chenopodium quinoa HOM05D003413 ORTHO05D004197 3.0e-51 205.7 134 76.1
CiPaw.06G100800 Carya illinoinensis HOM05D003413 ORTHO05D004197 3.9e-51 205.3 134 76.9
Peaxi162Scf01227g00031 Petunia axillaris HOM05D003413 ORTHO05D004197 5.2e-51 204.9 135 76.3
Cc11_g16770 Coffea canephora HOM05D003413 ORTHO05D004197 6.7e-51 204.5 135 74.1
Gohir.A01G160500 Gossypium hirsutum HOM05D003413 ORTHO05D004197 8.8e-51 204.1 134 76.9
Cfa020602 Carpinus fangiana HOM05D003413 ORTHO05D004197 1.5e-50 203.4 134 76.1
Dinv14816 Davidia involucrata HOM05D003413 ORTHO05D004197 1.5e-50 203.4 136 75.0
Gohir.D01G155200 Gossypium hirsutum HOM05D003413 ORTHO05D004197 1.5e-50 203.4 134 76.9
Nitab4.5_0000071g0160 Nicotiana tabacum HOM05D003413 ORTHO05D004197 1.5e-50 203.4 160 68.8
Gorai.002G192400 Gossypium raimondii HOM05D003413 ORTHO05D004197 2.0e-50 203.0 134 76.9
Migut.E00028 Erythranthe guttata HOM05D003413 ORTHO05D004197 3.3e-50 202.2 135 74.1
Manes.13G017700 Manihot esculenta HOM05D003413 ORTHO05D004197 5.7e-50 201.4 134 76.9
Duzib251G0571 Durio zibethinus HOM05D003413 ORTHO05D004197 7.4e-50 201.1 134 76.1
Gohir.A04G138900 Gossypium hirsutum HOM05D003413 ORTHO05D004197 7.4e-50 201.1 134 74.6
SalBow1G2866 Salvia bowleyana HOM05D003413 ORTHO05D004197 9.7e-50 200.7 135 74.1
GSVIVG01010375001 Vitis vinifera HOM05D003413 ORTHO05D004197 9.7e-50 200.7 134 75.4
Thecc.02G276700 Theobroma cacao HOM05D003413 ORTHO05D004197 1.3e-49 200.3 134 75.4
MSTRG.2454 Avicennia marina HOM05D003413 ORTHO05D004197 2.2e-49 199.5 134 73.9
Gorai.012G175200 Gossypium raimondii HOM05D003413 ORTHO05D004197 2.8e-49 199.1 134 73.9
Prupe.1G229300 Prunus persica HOM05D003413 ORTHO05D004197 2.8e-49 199.1 134 74.6
Lsat_1_v5_gn_8_149501 Lactuca sativa HOM05D003413 ORTHO05D004197 3.7e-49 198.7 135 75.6
Manes.12G013500 Manihot esculenta HOM05D003413 ORTHO05D004197 3.7e-49 198.7 134 76.1
Sed0004676 Sechium edule HOM05D003413 ORTHO05D004197 3.7e-49 198.7 134 73.1
THA.LOC104812691 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 3.7e-49 198.7 136 75.0
Cpa.g.sc43.24 Carica papaya HOM05D003413 ORTHO05D004197 4.8e-49 198.4 134 75.4
Cfa009337 Carpinus fangiana HOM05D003413 ORTHO05D004197 4.8e-49 198.4 134 75.4
Thhalv10008454m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 4.8e-49 198.4 136 74.3
QL04p035333 Quercus lobata HOM05D003413 ORTHO05D004197 4.8e-49 198.4 135 77.0
Haze_12385 Corylus avellana HOM05D003413 ORTHO05D004197 8.2e-49 197.6 145 70.3
Duzib268G0982 Durio zibethinus HOM05D003413 ORTHO05D004197 8.2e-49 197.6 134 73.1
HanXRQChr12g0372411 Helianthus annuus HOM05D003413 ORTHO05D004197 8.2e-49 197.6 136 75.0
Oeu020301.1 Olea europaea HOM05D003413 ORTHO05D004197 8.2e-49 197.6 135 74.1
Sed0019386 Sechium edule HOM05D003413 ORTHO05D004197 8.2e-49 197.6 135 76.3
MD10G1030600 Malus domestica HOM05D003413 ORTHO05D004197 1.1e-48 197.2 135 75.6
CiPaw.05G112700 Carya illinoinensis HOM05D003413 ORTHO05D004197 2.4e-48 196.1 134 73.9
ECA233G4198 Erigeron canadensis HOM05D003413 ORTHO05D004197 3.1e-48 195.7 135 73.3
Thhalv10004762m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 3.1e-48 195.7 136 73.5
Aa31LG1G1740 Aethionema arabicum HOM05D003413 ORTHO05D004197 4.1e-48 195.3 136 73.5
ClCG08G010150 Citrullus lanatus HOM05D003413 ORTHO05D004197 4.1e-48 195.3 134 71.6
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 4.1e-48 195.3 134 70.9
CANSAT01G2316 Cannabis sativa HOM05D003413 ORTHO05D004197 5.3e-48 194.9 134 73.1
COL.COLO4_20354 Corchorus olitorius HOM05D003413 ORTHO05D004197 5.3e-48 194.9 134 74.6
ECA246G0095 Erigeron canadensis HOM05D003413 ORTHO05D004197 5.3e-48 194.9 135 74.1
HanXRQChr08g0207581 Helianthus annuus HOM05D003413 ORTHO05D004197 5.3e-48 194.9 136 74.3
Sp2g15490 Schrenkiella parvula HOM05D003413 ORTHO05D004197 5.3e-48 194.9 136 72.8
CARHR013390 Cardamine hirsuta HOM05D003413 ORTHO05D004197 7.0e-48 194.5 136 74.3
Eucgr.H04655 Eucalyptus grandis HOM05D003413 ORTHO05D004197 7.0e-48 194.5 134 71.6
Gohir.D04G181800 Gossypium hirsutum HOM05D003413 ORTHO05D004197 7.0e-48 194.5 134 72.4
Ah.03g136290 Amaranthus hybridus HOM05D003413 ORTHO05D004197 9.1e-48 194.1 138 73.2
AT3G26340 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 9.1e-48 194.1 136 72.1
MELO3C011449.2 Cucumis melo HOM05D003413 ORTHO05D004197 9.1e-48 194.1 134 70.9
C08p15800 Brassica napus HOM05D003413 ORTHO05D004197 1.2e-47 193.7 136 72.8
CSS0027762 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 1.2e-47 193.7 134 74.6
Nn3g16510 Nelumbo nucifera HOM05D003413 ORTHO05D004197 1.6e-47 193.4 134 73.9
Sp1g11610 Schrenkiella parvula HOM05D003413 ORTHO05D004197 1.6e-47 193.4 136 72.8
Aa31LG2G6170 Aethionema arabicum HOM05D003413 ORTHO05D004197 2.0e-47 193.0 136 72.1
AL5G15110 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 2.0e-47 193.0 136 72.1
BcaB08g34231 Brassica carinata HOM05D003413 ORTHO05D004197 2.0e-47 193.0 136 72.8
BcaNung06606 Brassica carinata HOM05D003413 ORTHO05D004197 2.0e-47 193.0 136 72.8
A06p08660 Brassica napus HOM05D003413 ORTHO05D004197 2.0e-47 193.0 136 72.8
A08p32480 Brassica napus HOM05D003413 ORTHO05D004197 2.0e-47 193.0 136 72.8
A09p63450 Brassica napus HOM05D003413 ORTHO05D004197 2.0e-47 193.0 136 72.8
C08p46910 Brassica napus HOM05D003413 ORTHO05D004197 2.0e-47 193.0 136 72.8
BolC8t49206H Brassica oleracea HOM05D003413 ORTHO05D004197 2.0e-47 193.0 136 72.8
BolC8t52226H Brassica oleracea HOM05D003413 ORTHO05D004197 2.0e-47 193.0 136 72.8
BraA08t35172Z Brassica rapa HOM05D003413 ORTHO05D004197 2.0e-47 193.0 136 72.8
BraA09t41695Z Brassica rapa HOM05D003413 ORTHO05D004197 2.0e-47 193.0 136 72.8
unitig_62.g23655 Utricularia gibba HOM05D003413 ORTHO05D004197 2.0e-47 193.0 135 71.9
Sed0010714 Sechium edule HOM05D003413 ORTHO05D004197 2.6e-47 192.6 129 73.6
BcaC05g25088 Brassica carinata HOM05D003413 ORTHO05D004197 4.5e-47 191.8 136 72.1
C05p10270 Brassica napus HOM05D003413 ORTHO05D004197 4.5e-47 191.8 136 72.1
BraA06t24062Z Brassica rapa HOM05D003413 ORTHO05D004197 4.5e-47 191.8 136 72.1
Actinidia08079 Actinidia chinensis HOM05D003413 ORTHO05D004197 5.9e-47 191.4 134 73.1
Actinidia30663 Actinidia chinensis HOM05D003413 ORTHO05D004197 5.9e-47 191.4 134 73.1
Carub.0005s0426 Capsella rubella HOM05D003413 ORTHO05D004197 5.9e-47 191.4 136 71.3
CsaV3_5G030400 Cucumis sativus L. HOM05D003413 ORTHO05D004197 5.9e-47 191.4 135 74.1
MBI04_g08407_MAGBIO Magnolia biondii HOM05D003413 ORTHO05D004197 5.9e-47 191.4 134 71.6
Potri.008G177000 Populus trichocarpa HOM05D003413 ORTHO05D004197 5.9e-47 191.4 135 72.6
ClCG11G013810 Citrullus lanatus HOM05D003413 ORTHO05D004197 7.7e-47 191.0 120 80.0
MD16G1116800 Malus domestica HOM05D003413 ORTHO05D004197 7.7e-47 191.0 147 68.7
THA.LOC104814351 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 7.7e-47 191.0 136 71.3
vmacro20451 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 1.0e-46 190.7 134 72.4
CARHR147350 Cardamine hirsuta HOM05D003413 ORTHO05D004197 1.3e-46 190.3 136 69.9
RcHm_v2.0_Chr4g0430701 Rosa chinensis HOM05D003413 ORTHO05D004197 2.2e-46 189.5 134 73.1
Atru.chr11.2293 Acer truncatum HOM05D003413 ORTHO05D004197 2.9e-46 189.1 134 72.4
Sc01g0009880 Simmondsia chinensis HOM05D003413 ORTHO05D004197 2.9e-46 189.1 134 71.6
Phvul.009G167300 Phaseolus vulgaris HOM05D003413 ORTHO05D004197 3.8e-46 188.7 134 71.6
Hund25449 Selenicereus undatus HOM05D003413 ORTHO05D004197 3.8e-46 188.7 135 72.6
ATR1120G105 Amborella trichopoda HOM05D003413 ORTHO05D004197 5.0e-46 188.3 134 69.4
Rhsim12G0028500 Rhododendron simsii HOM05D003413 ORTHO05D004197 5.0e-46 188.3 134 71.6
Lalb_Chr07g0183311 Lupinus albus HOM05D003413 ORTHO05D004197 6.5e-46 188.0 134 71.6
TAR629G2699 Trochodendron aralioides HOM05D003413 ORTHO05D004197 6.5e-46 188.0 161 64.0
AL1G24710 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 1.5e-45 186.8 136 71.3
Glyma.06G171200 Glycine max HOM05D003413 ORTHO05D004197 1.5e-45 186.8 134 70.9
Carub.0001s1281 Capsella rubella HOM05D003413 ORTHO05D004197 1.9e-45 186.4 136 71.3
PGR119G0878 Punica granatum HOM05D003413 ORTHO05D004197 2.5e-45 186.0 134 69.4
Lalb_Chr12g0202151 Lupinus albus HOM05D003413 ORTHO05D004197 3.2e-45 185.7 134 71.6
Rhsim12G0102400 Rhododendron simsii HOM05D003413 ORTHO05D004197 3.2e-45 185.7 134 71.6
AT1G13060 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 4.2e-45 185.3 136 70.6
CSS0015662 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 4.2e-45 185.3 135 72.6
Ca_24508_v3 Cicer arietinum L. HOM05D003413 ORTHO05D004197 4.2e-45 185.3 134 70.9
Psat0s14g0120 Pisum sativum HOM05D003413 ORTHO05D004197 5.5e-45 184.9 134 70.9
arahy.Tifrunner.gnm1.ann1.3BP915 Arachis hypogaea HOM05D001045 ORTHO05D004836 7.2e-45 184.5 135 70.4
Lj1g0010419 Lotus japonicus HOM05D003413 ORTHO05D004197 7.2e-45 184.5 134 70.1
BolC5t29773H Brassica oleracea HOM05D003413 ORTHO05D004197 9.4e-45 184.1 130 72.3
Oeu056675.1 Olea europaea HOM05D003413 ORTHO05D004197 9.4e-45 184.1 134 72.4
Aqoxy5G03439 Aquilegia oxysepala HOM05D003413 ORTHO05D004197 1.6e-44 183.3 139 69.8
SHI04151 Sapria himalayana HOM05D003413 ORTHO05D004197 1.6e-44 183.3 136 70.6
Potri.010G058100 Populus trichocarpa HOM05D003413 ORTHO05D004197 2.1e-44 183.0 137 70.8
vmacro01074 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 3.6e-44 182.2 117 77.8
VMungo1309G0564 Vigna mungo HOM05D003413 ORTHO05D004197 3.6e-44 182.2 138 69.6
Glyma.04G194700 Glycine max HOM05D003413 ORTHO05D004197 1.4e-43 180.3 134 68.7
Sabra10G0047300 Salix brachista HOM05D003413 ORTHO05D004197 1.8e-43 179.9 138 69.6
TWI18G0413 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 3.0e-43 179.1 137 67.9
arahy.Tifrunner.gnm1.ann1.DD2PIM Arachis hypogaea HOM05D003413 ORTHO05D004197 4.0e-43 178.7 136 68.4
arahy.Tifrunner.gnm1.ann1.R6HZSL Arachis hypogaea HOM05D003413 ORTHO05D004197 5.2e-43 178.3 117 76.1
FvH4_4g24020 Fragaria vesca HOM05D003413 ORTHO05D004197 5.2e-43 178.3 139 67.6
FAN12G0555 Fragaria x ananassa HOM05D003413 ORTHO05D004197 5.2e-43 178.3 139 67.6
FAN17G2448 Fragaria x ananassa HOM05D003413 ORTHO05D004197 5.2e-43 178.3 139 67.6
FAN22G2268 Fragaria x ananassa HOM05D003413 ORTHO05D004197 5.2e-43 178.3 139 66.9
Hund21776 Selenicereus undatus HOM05D003413 ORTHO05D004197 6.7e-43 177.9 118 77.1
Medtr3g089040 Medicago truncatula HOM05D003413 ORTHO05D004197 1.2e-42 177.2 132 69.7
TWI36G0673 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 1.5e-42 176.8 137 67.9
CDE07G0715 Ceratophyllum demersum HOM05D003413 ORTHO05D004197 3.3e-42 175.6 146 63.7
Ciclev10032238m.g Citrus clementina HOM05D003413 ORTHO05D004197 3.7e-41 172.2 134 66.4
CDE05G0059 Ceratophyllum demersum HOM05D003413 ORTHO05D004197 4.8e-41 171.8 120 74.2
PSO063G0094 Papaver somniferum HOM05D003413 ORTHO05D004197 8.2e-41 171.0 135 68.1
PSO782G4279 Papaver somniferum HOM05D003413 ORTHO05D004197 8.2e-41 171.0 135 68.1
FAN07G1700 Fragaria x ananassa HOM05D003413 ORTHO05D004197 1.4e-40 170.2 128 71.1
Sabra08G0134800 Salix brachista HOM05D003413 ORTHO05D004197 5.3e-40 168.3 151 61.6
Mapoly0021s0078 Marchantia polymorpha HOM05D003413 ORTHO05D004197 1.6e-39 166.8 138 60.9
DCAR_026471 Daucus carota HOM05D003413 ORTHO05D004197 6.5e-38 161.4 96 83.3
Lj6A824T74 Lonicera japonica HOM05D003413 ORTHO05D004197 8.5e-38 161.0 180 51.7
Pp3c11_2970 Physcomitrium patens HOM05D003413 ORTHO05D004197 1.1e-37 160.6 132 62.9
SMO147G0030 Selaginella moellendorffii HOM05D003413 ORTHO05D004197 3.2e-37 159.1 134 59.7
Os06g0153800 Oryza sativa ssp. japonica HOM05D003413 ORTHO05D004197 1.6e-36 156.8 139 60.4
CBR_g34466 Chara braunii HOM05D003413 ORTHO05D004197 5.7e-34 148.3 102 67.6
HPP92_020236 Vanilla planifolia HOM05D003413 ORTHO05D004197 7.5e-34 147.9 134 58.2
Zm00001eb376670 Zea mays HOM05D003413 ORTHO05D004197 1.7e-33 146.7 138 59.4
CBR_g23349 Chara braunii HOM05D003413 ORTHO05D004197 1.8e-32 143.3 143 51.7
Solyc03g063450.2 Solanum lycopersicum HOM05D003413 ORTHO05D004197 4.1e-32 142.1 173 50.9
Pp3c7_21050 Physcomitrium patens HOM05D003413 ORTHO05D004197 1.2e-31 140.6 95 71.6
MCO06G264 Micromonas commoda HOM05D003413 ORTHO05D004197 3.5e-31 139.0 140 51.4
Lsat_1_v5_gn_3_130100 Lactuca sativa HOM05D003413 ORTHO05D013393 5.9e-31 138.3 98 74.5
Cre10.g461950 Chlamydomonas reinhardtii HOM05D003413 ORTHO05D004197 1.6e-28 130.2 102 59.8
PRCOL_00003194 Prasinoderma coloniale HOM05D003413 ORTHO05D004197 1.8e-27 126.7 155 47.7
Cc07_g08060 Coffea canephora HOM05D003413 ORTHO05D004197 4.5e-23 112.1 102 58.8
TPR.G750 Trifolium pratense HOM05D003413 ORTHO05D029074 3.3e-21 105.9 81 69.1
unitig_52.g17190 Utricularia gibba HOM05D003413 ORTHO05D004197 4.0e-19 99.0 135 43.7
BolC8t47970H Brassica oleracea HOM05D003413 ORTHO05D004197 3.4e-18 95.9 86 61.6
Cfa025082 Carpinus fangiana HOM05D003413 ORTHO05D124667 3.4e-18 95.9 85 55.3
Haze_26535 Corylus avellana HOM05D003413 ORTHO05D004197 4.9e-17 92.0 85 55.3
DCAR_026523 Daucus carota HOM05D003413 ORTHO05D004197 3.2e-16 89.4 66 68.2
TPR.G26137 Trifolium pratense HOM05D003413 ORTHO05D004197 1.2e-15 87.4 54 77.8
SGA_v2.0_scaffold96G29099 Striga asiatica HOM05D003413 ORTHO05D004197 2.0e-15 86.7 67 68.7
MD06G1053500 Malus domestica HOM05D003413 ORTHO05D029074 3.9e-14 82.4 81 58.0
QL05p055614 Quercus lobata HOM05D003413 ORTHO05D004197 1.9e-13 80.1 56 67.9
Lalb_Chr06g0172281 Lupinus albus HOM05D003413 ORTHO05D004197 5.2e-11 72.0 44 86.4
COL.COLO4_15071 Corchorus olitorius HOM05D003413 ORTHO05D029074 1.1e-08 64.3 33 93.9
COL.COLO4_24638 Corchorus olitorius HOM05D003413 ORTHO05D029074 1.1e-08 64.3 33 93.9
GSVIVG01026163001 Vitis vinifera HOM05D000518 ORTHO05D439062 1.1e-08 64.3 35 91.4
BcaC07g37608 Brassica carinata HOM05D003413 ORTHO05D004197 1.9e-08 63.5 72 51.4
A03p26430 Brassica napus HOM05D003413 ORTHO05D004197 7.0e-08 61.6 35 88.6
Oeu049152.1 Olea europaea HOM05D003413 ORTHO05D004197 4.6e-07 58.9 39 66.7
Hma1.2p1_0055F.1_g031530 Hydrangea macrophylla HOM05D003413 ORTHO05D004197 3.0e-06 56.2 68 51.5
Hma1.2p1_0743F.1_g211500 Hydrangea macrophylla HOM05D000070 ORTHO05D000042 6.6e-06 55.1 28 92.9


User provided reference genes

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