Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 1.8e-165 585.9 296 100.0
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.8e-163 578.6 296 99.0
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 3.2e-143 511.9 296 86.1
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 4.0e-133 478.4 297 83.2
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.2e-131 472.6 303 81.8
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 6.0e-113 411.4 306 69.3
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 3.9e-112 408.7 299 68.9
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 2.5e-111 406.0 298 69.5
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.8e-110 402.5 298 68.1
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 8.1e-110 401.0 314 66.9
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.2e-106 389.0 299 68.9
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 7.8e-105 384.4 315 65.4
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 1.3e-104 383.6 306 66.7
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 8.6e-104 380.9 314 65.6
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 8.6e-104 380.9 305 65.9
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 1.4e-101 373.6 306 64.1
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 2.6e-100 369.4 307 64.8
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 2.6e-100 369.4 307 64.5
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 2.6e-100 369.4 297 65.7
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 4.4e-100 368.6 311 64.0
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 5.8e-100 368.2 301 66.1
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 7.6e-100 367.9 278 68.0
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 3.8e-99 365.5 266 71.4
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 1.1e-98 364.0 302 64.2
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.1e-98 364.0 299 64.2
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.9e-98 363.2 253 71.9
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 5.4e-98 361.7 298 64.1
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 5.4e-98 361.7 264 69.7
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 7.1e-98 361.3 304 64.8
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 9.2e-98 360.9 266 69.9
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.6e-97 360.1 306 64.1
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 3.5e-97 359.0 264 67.8
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 6.0e-97 358.2 266 69.2
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 7.8e-97 357.8 225 80.9
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 7.8e-97 357.8 269 68.0
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 1.7e-96 356.7 266 68.8
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 2.3e-96 356.3 296 64.2
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 3.0e-96 355.9 252 70.2
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 3.9e-96 355.5 270 67.4
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 5.1e-96 355.1 305 63.6
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 5.1e-96 355.1 301 61.5
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 5.1e-96 355.1 264 70.1
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 8.6e-96 354.4 268 67.9
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 8.6e-96 354.4 303 62.0
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.5e-95 353.6 255 69.4
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.9e-95 353.2 324 61.4
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.9e-95 353.2 324 61.4
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.5e-95 352.8 268 67.2
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.5e-95 352.8 300 63.3
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 3.3e-95 352.4 266 67.7
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 4.3e-95 352.1 305 63.0
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 4.3e-95 352.1 305 63.0
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 5.6e-95 351.7 277 66.1
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 1.6e-94 350.1 267 69.7
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 2.1e-94 349.7 285 62.1
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 2.1e-94 349.7 286 63.3
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 3.6e-94 349.0 257 67.7
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 3.6e-94 349.0 270 64.8
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.4e-93 347.1 256 69.5
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 1.8e-93 346.7 253 65.2
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.8e-93 346.7 267 68.5
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 2.4e-93 346.3 308 61.0
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 5.2e-93 345.1 254 68.1
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 5.2e-93 345.1 265 66.4
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.5e-92 343.6 257 66.5
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 2.0e-92 343.2 295 59.0
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 2.0e-92 343.2 296 58.8
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 2.0e-92 343.2 295 59.0
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 2.6e-92 342.8 255 69.8
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.6e-92 342.8 271 67.2
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 4.4e-92 342.0 297 60.9
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 5.8e-92 341.7 269 64.3
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 9.9e-92 340.9 269 63.9
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 9.9e-92 340.9 318 61.3
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.3e-91 340.5 299 59.2
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.3e-91 340.5 291 59.8
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.3e-91 340.5 256 68.8
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 2.9e-91 339.3 257 65.8
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 3.8e-91 339.0 241 71.8
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 4.9e-91 338.6 254 68.1
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.9e-90 336.7 267 63.3
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.9e-90 336.7 236 71.2
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 3.2e-90 335.9 257 67.3
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 4.2e-90 335.5 257 64.2
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 5.4e-90 335.1 265 62.3
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 7.1e-90 334.7 295 58.6
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 7.1e-90 334.7 264 64.4
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 7.1e-90 334.7 255 67.8
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 2.1e-89 333.2 295 58.6
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 6.0e-89 331.6 275 63.3
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 6.0e-89 331.6 292 61.3
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 1.0e-88 330.9 274 59.5
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 3.9e-88 328.9 236 69.9
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 5.1e-88 328.6 254 63.4
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 5.1e-88 328.6 252 66.3
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 6.6e-88 328.2 254 63.4
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 6.6e-88 328.2 244 69.3
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.1e-87 327.4 285 58.9
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.1e-87 327.4 315 57.1
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.9e-87 326.6 360 50.8
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 4.3e-87 325.5 245 66.1
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 5.6e-87 325.1 287 57.8
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 9.6e-87 324.3 287 57.8
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.3e-86 323.9 241 68.0
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 2.8e-86 322.8 310 54.8
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 3.6e-86 322.4 250 62.8
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 6.2e-86 321.6 293 56.7
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 6.2e-86 321.6 293 56.7
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.1e-85 320.9 294 57.5
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 1.8e-85 320.1 236 66.1
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 9.0e-85 317.8 293 56.3
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 3.8e-83 312.4 265 58.9
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 8.4e-83 311.2 237 64.6
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 3.5e-81 305.8 252 61.5
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.0e-80 304.3 246 60.6
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.3e-80 303.9 246 63.8
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 2.5e-79 299.7 217 71.0
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 2.5e-79 299.7 371 47.2
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.3e-79 299.3 275 60.4
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 2.1e-78 296.6 239 65.7
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.8e-78 296.2 255 60.8
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 3.6e-78 295.8 268 57.5
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.4e-77 293.9 270 57.8
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 2.9e-75 286.2 265 58.9
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 1.9e-74 283.5 275 58.2
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.9e-74 283.5 241 58.9
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 6.0e-73 278.5 314 51.3
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.9e-73 278.1 335 50.1
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.3e-72 277.3 295 52.2
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 6.7e-72 275.0 263 59.7
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.9e-71 273.5 337 49.3
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 2.8e-70 269.6 250 54.8
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 1.5e-60 237.3 221 55.7
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.0e-56 224.6 244 46.7
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.3e-56 224.2 166 63.9
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 3.9e-56 222.6 300 41.3
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 5.7e-55 218.8 457 34.6
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 4.8e-54 215.7 259 45.9
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 4.1e-53 212.6 236 44.5
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 1.2e-52 211.1 250 43.6
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 1.8e-48 197.2 187 57.2
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 6.7e-48 195.3 135 68.9
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 7.4e-47 191.8 312 40.1
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 2.0e-44 183.7 127 70.9
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 1.1e-39 167.9 177 46.3
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 5.3e-37 159.1 123 63.4
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 3.8e-27 126.3 168 44.6
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 1.6e-20 104.4 93 48.4
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.0e-19 101.7 76 64.5
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 2.3e-19 100.5 73 67.1
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 6.8e-16 89.0 72 61.1
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 3.1e-13 80.1 69 58.0
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.6e-12 77.8 192 32.3
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 5.9e-12 75.9 70 48.6
Oeu028866.1 Olea europaea HOM05D002234 ORTHO05D002254 8.0e-09 65.5 195 32.3
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 4.0e-08 63.2 51 54.9
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 4.0e-08 63.2 50 66.0
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 5.2e-08 62.8 196 28.6
CAN.G726.26 Capsicum annuum HOM05D002234 ORTHO05D002254 8.9e-08 62.0 188 29.3
Migut.A01084 Erythranthe guttata HOM05D002234 ORTHO05D002254 1.5e-07 61.2 189 29.1
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 2.6e-07 60.5 199 26.1
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 5.7e-07 59.3 206 28.6
VMungo1215G0334 Vigna mungo HOM05D002234 ORTHO05D002254 5.7e-07 59.3 192 27.1
PGSC0003DMG402014796 Solanum tuberosum HOM05D002234 ORTHO05D002254 7.5e-07 58.9 191 29.3
Lj2P366T41 Lonicera japonica HOM05D004474 ORTHO05D005538 2.2e-06 57.4 87 49.4
TAR623G1365 Trochodendron aralioides HOM05D004474 ORTHO05D414940 2.9e-06 57.0 49 65.3


User provided reference genes

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