Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 4327.7 2174 100.0
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 4216.8 2175 97.7
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 3747.2 2192 86.9
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 3635.9 2198 84.0
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 3534.2 2215 81.6
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2765.7 2237 64.4
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2710.3 2216 63.6
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2705.2 2239 63.1
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2651.7 2248 62.0
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2648.2 2237 62.4
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2640.5 2228 62.2
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2637.8 2229 62.3
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2634.0 2228 62.0
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2613.6 2247 61.4
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2601.2 2227 61.1
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2593.9 2226 61.3
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2589.3 2225 60.7
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2582.7 2221 60.6
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2578.5 2235 60.3
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2571.6 2234 60.0
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2563.1 2233 60.1
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2556.2 2233 59.7
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2552.7 2229 60.5
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2539.2 2230 59.9
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2538.1 2229 59.8
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2526.9 2229 60.2
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2523.8 2227 60.0
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2516.5 2241 59.5
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2511.5 2237 58.5
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2511.5 2229 59.4
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2501.5 2207 59.5
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2498.0 2228 58.8
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2496.1 2228 58.8
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2485.3 2231 57.9
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2483.4 2244 58.7
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2482.6 2217 58.5
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2448.7 2220 57.7
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2436.0 2218 57.3
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2424.8 2227 57.2
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2424.8 2242 57.6
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2422.9 2217 57.6
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2410.6 2210 57.2
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2409.4 2220 58.5
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2405.9 2237 57.1
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2403.6 2238 57.1
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2403.2 2220 57.6
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2399.8 2235 57.1
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2395.2 2219 57.2
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2387.5 2234 56.8
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2381.3 2214 57.9
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2378.2 2232 57.5
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2377.1 2226 58.0
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2376.3 2234 57.8
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2363.6 2234 56.8
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2357.8 2256 56.4
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2357.8 2232 56.3
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2338.9 2219 56.4
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2338.5 2212 56.3
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2334.7 2241 56.4
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2329.7 2225 56.5
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2327.7 2237 56.6
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2325.1 2251 56.1
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2319.7 2225 56.4
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2306.6 2232 56.5
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2301.6 2233 56.8
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2300.0 2226 56.2
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2286.1 2237 55.3
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2263.4 2211 55.9
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2257.6 2243 55.0
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2256.1 2208 55.5
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2244.5 2212 55.3
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2241.8 2211 55.0
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2238.4 2211 55.0
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2238.4 2211 55.0
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2236.5 2214 55.4
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2231.4 2207 55.0
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2231.4 2207 55.0
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2197.5 2320 52.8
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2123.2 2208 53.2
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2114.7 1902 57.7
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2114.7 1831 60.4
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2102.8 1817 60.5
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2100.1 1824 59.4
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2091.6 2045 56.0
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2063.9 2331 49.5
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2046.9 2232 50.9
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2040.0 2215 51.0
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1960.3 1716 59.3
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1878.2 2205 49.0
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1773.8 2388 44.1
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1713.0 1419 63.7
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1565.4 1697 52.0
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1510.7 1391 58.7
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1459.5 2176 41.8
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1455.3 2340 39.4
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1404.0 2357 38.1
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1340.9 2236 37.9
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1214.5 1114 58.4
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1185.6 1013 60.2
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1173.7 1212 53.4
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1135.2 1063 57.4
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1099.0 935 62.1
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 1092.8 1411 46.6
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 1.8e-270 937.6 783 63.2
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 2.2e-257 894.0 1016 50.9
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 2.5e-256 890.6 2466 29.5
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 3.7e-220 770.4 859 48.8
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 4.1e-219 766.9 1361 37.6
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 4.9e-204 716.8 729 54.0
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 1.1e-174 619.4 990 40.1
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 1.5e-152 545.8 2369 25.8
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 2.9e-124 451.8 441 51.2
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 3.7e-119 434.9 315 73.7
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.1e-107 396.7 301 70.4
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 4.5e-101 374.8 370 55.1
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 1.2e-98 366.7 228 82.5
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 3.5e-93 348.6 316 62.3
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 6.2e-82 311.2 228 71.9
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 5.4e-78 298.1 269 62.5
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 2.8e-74 285.8 289 57.1
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 1.4e-73 283.5 750 29.6
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.5e-59 236.1 218 61.5
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 3.3e-51 209.1 133 78.2
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 2.9e-47 196.1 177 61.0
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 9.0e-41 174.5 146 62.3
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 4.8e-34 152.1 97 75.3
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 4.2e-30 139.0 473 27.3
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 1.9e-27 130.2 285 33.0
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 7.4e-27 128.3 103 61.2
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 5.9e-24 118.6 106 60.4
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 3.9e-20 105.9 113 53.1
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 2.5e-14 86.7 988 20.2
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.8e-12 80.5 100 40.0


User provided reference genes

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