Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g014490 Solanum pennellii HOM05D003063 ORTHO05D003242 1.0e-93 346.7 172 100.0
Solyc02g092350.3 Solanum lycopersicum HOM05D003063 ORTHO05D003242 1.4e-34 150.2 171 50.9
PGSC0003DMG400021416 Solanum tuberosum HOM05D003063 ORTHO05D003242 1.4e-34 150.2 167 52.7
Sopen02g036900 Solanum pennellii HOM05D003063 ORTHO05D003242 1.8e-32 143.3 185 50.3
CAN.G1075.39 Capsicum annuum HOM05D003063 ORTHO05D003242 7.2e-26 121.3 186 45.2
Sopen12g021200 Solanum pennellii HOM05D003063 ORTHO05D003242 3.7e-22 109.0 94 60.6
Nitab4.5_0000142g0080 Nicotiana tabacum HOM05D003063 ORTHO05D003242 4.8e-22 108.6 123 52.8
Nitab4.5_0002119g0070 Nicotiana tabacum HOM05D003063 ORTHO05D003242 1.2e-17 94.0 130 48.5
Solyc03g060520.1 Solanum lycopersicum HOM05D003063 ORTHO05D003242 1.1e-15 87.4 60 75.0
QL06p039562 Quercus lobata HOM05D003063 ORTHO05D003242 9.7e-15 84.3 187 30.5
Oeu011986.1 Olea europaea HOM05D003063 ORTHO05D003242 2.2e-14 83.2 113 48.7
Prupe.6G220300 Prunus persica HOM05D003063 ORTHO05D003242 6.3e-14 81.6 113 46.0
Solyc12g042120.3 Solanum lycopersicum HOM05D003063 ORTHO05D003242 6.3e-14 81.6 48 81.2
Cc07_g07110 Coffea canephora HOM05D003063 ORTHO05D003242 1.2e-12 77.4 178 32.6
Rhsim08G0093400 Rhododendron simsii HOM05D003063 ORTHO05D003242 2.0e-12 76.6 190 30.5
Cfa004133 Carpinus fangiana HOM05D003401 ORTHO05D003906 3.4e-12 75.9 115 39.1
Dinv26934 Davidia involucrata HOM05D003063 ORTHO05D003242 5.9e-12 75.1 187 33.2
vmacro18025 Vaccinium macrocarpon HOM05D003063 ORTHO05D003242 7.7e-12 74.7 126 34.1
Eucgr.H02308 Eucalyptus grandis HOM05D003063 ORTHO05D003242 1.0e-11 74.3 202 29.7
CiPaw.01G004400 Carya illinoinensis HOM05D003063 ORTHO05D003242 1.7e-11 73.6 115 39.1
FvH4_1g17750 Fragaria vesca HOM05D003063 ORTHO05D003242 5.0e-11 72.0 167 33.5
FAN19G2514 Fragaria x ananassa HOM05D003063 ORTHO05D003242 5.0e-11 72.0 167 33.5
CSS0003630 Camellia sinensis var. sinensis HOM05D003063 ORTHO05D003242 6.5e-11 71.6 99 42.4
GSVIVG01000104001 Vitis vinifera HOM05D003063 ORTHO05D003242 6.5e-11 71.6 98 39.8
Actinidia16426 Actinidia chinensis HOM05D002283 ORTHO05D008228 2.5e-10 69.7 123 37.4
Thecc.01G072900 Theobroma cacao HOM05D003063 ORTHO05D003242 3.2e-10 69.3 146 33.6
Migut.H00346 Erythranthe guttata HOM05D003063 ORTHO05D003242 5.5e-10 68.6 115 39.1
RcHm_v2.0_Chr2g0108061 Rosa chinensis HOM05D003063 ORTHO05D003242 7.2e-10 68.2 99 37.4
THA.LOC104827634 Tarenaya hassleriana HOM05D003063 ORTHO05D003242 1.6e-09 67.0 121 36.4
Ciclev10027120m.g Citrus clementina HOM05D003063 ORTHO05D003242 2.1e-09 66.6 135 31.9
FAN23G1757 Fragaria x ananassa HOM05D003063 ORTHO05D003242 2.1e-09 66.6 113 36.3
Lj2g0021519 Lotus japonicus HOM05D003063 ORTHO05D003242 3.6e-09 65.9 112 36.6
Gohir.D11G208600 Gossypium hirsutum HOM05D003063 ORTHO05D003242 4.7e-09 65.5 123 33.3
TAR381G1137 Trochodendron aralioides HOM05D003063 ORTHO05D003242 4.7e-09 65.5 182 27.5
Duzib147G1538 Durio zibethinus HOM05D003063 ORTHO05D003242 6.1e-09 65.1 127 36.2
Gorai.007G223600 Gossypium raimondii HOM05D003063 ORTHO05D003242 6.1e-09 65.1 123 33.3
GSVIVG01002076001 Vitis vinifera HOM05D003063 ORTHO05D003242 1.0e-08 64.3 121 37.2
Sc07g0000540 Simmondsia chinensis HOM05D003063 ORTHO05D003242 1.4e-08 63.9 111 34.2
Atru.chr3.1013 Acer truncatum HOM05D003063 ORTHO05D003242 3.0e-08 62.8 112 38.4
TWI73G0373 Tripterygium wilfordii HOM05D003063 ORTHO05D003242 3.0e-08 62.8 123 32.5
Haze_15281 Corylus avellana HOM05D003063 ORTHO05D003242 3.9e-08 62.4 57 50.9
Lj7A98G7 Lonicera japonica HOM05D003063 ORTHO05D003242 5.2e-08 62.0 168 27.4
Sp2g29100 Schrenkiella parvula HOM05D003063 ORTHO05D003242 5.2e-08 62.0 123 32.5
AL8G43750 Arabidopsis lyrata HOM05D003063 ORTHO05D003242 6.7e-08 61.6 117 35.0
CARHR280040 Cardamine hirsuta HOM05D003063 ORTHO05D003242 6.7e-08 61.6 121 33.9
Cpa.g.sc6.14 Carica papaya HOM05D003063 ORTHO05D003242 6.7e-08 61.6 113 37.2
Manes.12G114901 Manihot esculenta HOM05D003063 ORTHO05D003242 6.7e-08 61.6 111 35.1
PSO541G1933 Papaver somniferum HOM05D003063 ORTHO05D003242 6.7e-08 61.6 55 47.3
Medtr5g015390 Medicago truncatula HOM05D003063 ORTHO05D003242 1.1e-07 60.8 122 34.4
Hund13953 Selenicereus undatus HOM05D003063 ORTHO05D003242 1.1e-07 60.8 77 42.9
VMungo1215G2377 Vigna mungo HOM05D003063 ORTHO05D003242 1.1e-07 60.8 113 35.4
arahy.Tifrunner.gnm1.ann1.7H1L6U Arachis hypogaea HOM05D003063 ORTHO05D003242 1.5e-07 60.5 98 37.8
Psat2g171600 Pisum sativum HOM05D003063 ORTHO05D003242 1.5e-07 60.5 56 48.2
MD02G1186300 Malus domestica HOM05D003063 ORTHO05D003242 2.0e-07 60.1 113 38.9
BcaC04g23234 Brassica carinata HOM05D003063 ORTHO05D003242 2.6e-07 59.7 130 33.1
Thhalv10005509m.g Eutrema salsugineum HOM05D003063 ORTHO05D003242 2.6e-07 59.7 121 32.2
Glyma.11G047500 Glycine max HOM05D003063 ORTHO05D003242 2.6e-07 59.7 113 37.2
PSO675G8643 Papaver somniferum HOM05D003063 ORTHO05D003242 2.6e-07 59.7 55 45.5
BcaB04g20046 Brassica carinata HOM05D003063 ORTHO05D003242 3.3e-07 59.3 130 32.3
Phvul.002G010500 Phaseolus vulgaris HOM05D003063 ORTHO05D003242 3.3e-07 59.3 113 35.4
arahy.Tifrunner.gnm1.ann1.L590LZ Arachis hypogaea HOM05D003063 ORTHO05D003242 4.4e-07 58.9 56 46.4
AUR62040236 Chenopodium quinoa HOM05D003063 ORTHO05D003242 4.4e-07 58.9 89 40.4
Gohir.A11G214800 Gossypium hirsutum HOM05D003063 ORTHO05D003242 4.4e-07 58.9 104 34.6
AT5G67550 Arabidopsis thaliana HOM05D003063 ORTHO05D003242 5.7e-07 58.5 121 33.1
C09p10860 Brassica napus HOM05D003063 ORTHO05D003242 5.7e-07 58.5 130 32.3
Aqoxy6G02607 Aquilegia oxysepala HOM05D003063 ORTHO05D003242 9.7e-07 57.8 57 45.6
Lalb_Chr09g0323611 Lupinus albus HOM05D003063 ORTHO05D003242 9.7e-07 57.8 113 36.3
TPR.G9937 Trifolium pratense HOM05D003063 ORTHO05D003242 9.7e-07 57.8 109 36.7
A09p09280 Brassica napus HOM05D003063 ORTHO05D003242 1.3e-06 57.4 130 31.5
BraA09t36581Z Brassica rapa HOM05D003063 ORTHO05D003242 1.3e-06 57.4 130 31.5
SGA_v2.0_scaffold15G07460 Striga asiatica HOM05D003063 ORTHO05D003242 1.3e-06 57.4 178 30.9
A02p44150 Brassica napus HOM05D003063 ORTHO05D003242 2.2e-06 56.6 111 34.2
BraA02t09338Z Brassica rapa HOM05D003063 ORTHO05D003242 2.2e-06 56.6 111 34.2
PGR102G0884 Punica granatum HOM05D003063 ORTHO05D003242 2.2e-06 56.6 57 47.4
BcaC03g18366 Brassica carinata HOM05D003063 ORTHO05D003242 2.8e-06 56.2 138 30.4
C02p64410 Brassica napus HOM05D003063 ORTHO05D003242 2.8e-06 56.2 111 33.3
Zm00001eb168740 Zea mays HOM05D003063 ORTHO05D003242 2.8e-06 56.2 125 32.8
Lsat_1_v5_gn_4_161620 Lactuca sativa HOM05D003063 ORTHO05D003242 3.7e-06 55.8 115 35.7
MBI16_g23887_MAGBIO Magnolia biondii HOM05D003063 ORTHO05D003242 3.7e-06 55.8 92 35.9
COL.COLO4_11579 Corchorus olitorius HOM05D003063 ORTHO05D003242 4.8e-06 55.5 117 34.2
BolC2t12505H Brassica oleracea HOM05D003063 ORTHO05D003242 8.2e-06 54.7 111 33.3
HanXRQChr12g0373031 Helianthus annuus HOM05D003063 ORTHO05D003242 8.2e-06 54.7 124 31.5


User provided reference genes

Program Settings