Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g011570 Solanum pennellii HOM05D001608 ORTHO05D393261 2.6e-62 241.9 122 100.0
Oeu008014.1 Olea europaea HOM05D001608 ORTHO05D002070 8.1e-08 60.8 43 72.1
Oeu026404.2 Olea europaea HOM05D001608 ORTHO05D002070 8.1e-08 60.8 43 72.1
Eucgr.F00722 Eucalyptus grandis HOM05D001608 ORTHO05D002070 1.1e-07 60.5 45 68.9
SGA_v2.0_scaffold8G04343 Striga asiatica HOM05D001608 ORTHO05D002070 1.8e-07 59.7 43 69.8
Nitab4.5_0001393g0100 Nicotiana tabacum HOM05D001608 ORTHO05D002070 2.4e-07 59.3 46 67.4
MSTRG.12987 Avicennia marina HOM05D001608 ORTHO05D002070 3.1e-07 58.9 43 67.4
TPR.G33747 Trifolium pratense HOM05D001608 ORTHO05D002070 4.0e-07 58.5 48 62.5
Lj8A171G40 Lonicera japonica HOM05D001608 ORTHO05D002070 5.3e-07 58.2 46 67.4
Sopen10g002150 Solanum pennellii HOM05D001608 ORTHO05D002070 6.9e-07 57.8 46 56.5
SGA_v2.0_scaffold363G49947 Striga asiatica HOM05D001608 ORTHO05D002070 6.9e-07 57.8 43 67.4
Actinidia32267 Actinidia chinensis HOM05D001608 ORTHO05D002070 1.2e-06 57.0 46 65.2
CSS0005633 Camellia sinensis var. sinensis HOM05D001608 ORTHO05D002070 1.2e-06 57.0 43 69.8
Hma1.2p1_2862F.1_g329570 Hydrangea macrophylla HOM05D001608 ORTHO05D002070 1.5e-06 56.6 46 65.2
Nitab4.5_0000168g0240 Nicotiana tabacum HOM05D001608 ORTHO05D002070 2.0e-06 56.2 44 68.2
SalBow8G4621 Salvia bowleyana HOM05D001608 ORTHO05D002070 2.0e-06 56.2 46 60.9
THA.LOC104816911 Tarenaya hassleriana HOM05D001608 ORTHO05D002070 2.0e-06 56.2 46 60.9
Cpa.g.sc84.105 Carica papaya HOM05D001608 ORTHO05D002070 2.6e-06 55.8 46 63.0
ClCG09G010980 Citrullus lanatus HOM05D001608 ORTHO05D002070 2.6e-06 55.8 46 63.0
MELO3C013140.2 Cucumis melo HOM05D001608 ORTHO05D002070 2.6e-06 55.8 46 63.0
CsaV3_7G022000 Cucumis sativus L. HOM05D001608 ORTHO05D002070 2.6e-06 55.8 46 63.0
Duzib170G0224 Durio zibethinus HOM05D001608 ORTHO05D002070 2.6e-06 55.8 46 63.0
Potri.011G086800 Populus trichocarpa HOM05D001608 ORTHO05D002070 2.6e-06 55.8 46 63.0
Sed0022863 Sechium edule HOM05D001608 ORTHO05D002070 2.6e-06 55.8 46 63.0
CSS0031204 Camellia sinensis var. sinensis HOM05D001608 ORTHO05D002070 3.4e-06 55.5 42 69.0
Ca_25811_v3 Cicer arietinum L. HOM05D001608 ORTHO05D002070 3.4e-06 55.5 48 62.5
COL.COLO4_09899 Corchorus olitorius HOM05D001608 ORTHO05D002070 3.4e-06 55.5 46 60.9
Manes.15G068100 Manihot esculenta HOM05D001608 ORTHO05D002070 3.4e-06 55.5 46 63.0
vmacro02213 Vaccinium macrocarpon HOM05D001608 ORTHO05D002070 3.4e-06 55.5 45 64.4
RhsimUnG0248500 Rhododendron simsii HOM05D001608 ORTHO05D002070 4.5e-06 55.1 46 60.9
arahy.Tifrunner.gnm1.ann1.NRH3QV Arachis hypogaea HOM05D001608 ORTHO05D002070 5.8e-06 54.7 43 67.4
Gorai.013G250200 Gossypium raimondii HOM05D001608 ORTHO05D002070 5.8e-06 54.7 46 60.9
Lalb_Chr15g0081501 Lupinus albus HOM05D001608 ORTHO05D002070 5.8e-06 54.7 43 67.4
Peaxi162Scf00660g00007 Petunia axillaris HOM05D001608 ORTHO05D002070 5.8e-06 54.7 39 74.4
Zm00001eb070960 Zea mays HOM05D001608 ORTHO05D002070 5.8e-06 54.7 42 66.7
AL3G34720 Arabidopsis lyrata HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
AT3G20800 Arabidopsis thaliana HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
arahy.Tifrunner.gnm1.ann1.RCKD5T Arachis hypogaea HOM05D001608 ORTHO05D002070 7.6e-06 54.3 42 69.0
BcaB04g20627 Brassica carinata HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
BcaB06g26150 Brassica carinata HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
BcaC05g28280 Brassica carinata HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
BcaC09g49022 Brassica carinata HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
A01p34020 Brassica napus HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
A05p27980 Brassica napus HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
C01p43420 Brassica napus HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
C05p43280 Brassica napus HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
BolC5t33060H Brassica oleracea HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
BraA01t03506Z Brassica rapa HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
BraA05t21681Z Brassica rapa HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
Carub.0003s2076 Capsella rubella HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
Cc05_g14080 Coffea canephora HOM05D001608 ORTHO05D002070 7.6e-06 54.3 43 65.1
Thhalv10021160m.g Eutrema salsugineum HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
Gorai.010G128500 Gossypium raimondii HOM05D001608 ORTHO05D002070 7.6e-06 54.3 45 64.4
Os04g0613400 Oryza sativa ssp. japonica HOM05D001608 ORTHO05D002070 7.6e-06 54.3 42 66.7
Sp3g18820 Schrenkiella parvula HOM05D001608 ORTHO05D002070 7.6e-06 54.3 46 60.9
Glyma.08G319800 Glycine max HOM05D001608 ORTHO05D002070 1.0e-05 53.9 42 69.0
Glyma.18G092700 Glycine max HOM05D001608 ORTHO05D002070 1.0e-05 53.9 42 69.0
Os03g0784800 Oryza sativa ssp. japonica HOM05D001608 ORTHO05D002070 1.0e-05 53.9 42 64.3
Phvul.006G046900 Phaseolus vulgaris HOM05D001608 ORTHO05D002070 1.0e-05 53.9 42 69.0
Potri.001G359300 Populus trichocarpa HOM05D001608 ORTHO05D002070 1.0e-05 53.9 46 60.9
PGR031G1391 Punica granatum HOM05D001608 ORTHO05D002070 1.0e-05 53.9 43 67.4
PGSC0003DMG400014419 Solanum tuberosum HOM05D001608 ORTHO05D002070 1.0e-05 53.9 35 74.3
TWI39G0872 Tripterygium wilfordii HOM05D001608 ORTHO05D002070 1.0e-05 53.9 42 69.0
vmacro09697 Vaccinium macrocarpon HOM05D001608 ORTHO05D002070 1.0e-05 53.9 46 63.0
HPP92_000964 Vanilla planifolia HOM05D001608 ORTHO05D002070 1.0e-05 53.9 42 64.3
VMungo0540G2230 Vigna mungo HOM05D001608 ORTHO05D002070 1.0e-05 53.9 42 69.0


User provided reference genes

Program Settings