Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 0.0e+00 1363.6 760 100.0
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 0.0e+00 1207.6 754 83.7
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 0.0e+00 1159.4 755 81.2
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 3.7e-308 1061.2 653 92.8
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 9.8e-269 930.2 760 65.1
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 6.4e-268 927.5 758 65.0
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 9.2e-267 923.7 721 67.5
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 5.0e-265 917.9 755 64.2
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 1.2e-263 913.3 755 63.6
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 1.6e-263 912.9 755 63.7
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 3.6e-263 911.8 757 63.8
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 2.6e-261 905.6 790 61.6
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.3e-260 903.3 790 61.0
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 6.4e-260 901.0 766 62.5
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 6.4e-260 901.0 766 62.3
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 3.2e-259 898.7 753 63.5
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 1.2e-255 886.7 760 62.5
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 3.1e-254 882.1 755 62.8
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.2e-253 880.2 760 62.1
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 2.0e-253 879.4 760 61.7
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 3.4e-253 878.6 759 63.0
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 7.5e-253 877.5 772 61.5
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 7.5e-253 877.5 761 61.8
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 2.4e-251 872.5 751 62.5
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 1.6e-250 869.8 754 60.3
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 3.5e-250 868.6 764 61.3
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 6.6e-249 864.4 753 61.4
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 2.1e-247 859.4 755 60.3
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 2.1e-247 859.4 750 61.9
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 3.6e-247 858.6 751 60.1
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 3.6e-247 858.6 759 60.1
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 8.1e-247 857.4 776 60.8
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 8.9e-246 854.0 758 60.0
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 1.2e-245 853.6 759 58.4
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 1.2e-245 853.6 762 60.4
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.0e-245 852.8 820 57.8
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 3.4e-245 852.0 759 59.7
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 3.4e-245 852.0 762 60.4
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 4.4e-245 851.7 761 63.1
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 5.8e-245 851.3 753 58.7
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 9.9e-245 850.5 784 58.4
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 1.7e-244 849.7 753 59.5
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 2.2e-244 849.4 788 57.9
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 3.7e-244 848.6 744 61.2
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.7e-244 848.6 786 59.3
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 4.9e-244 848.2 767 59.8
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 8.4e-244 847.4 768 58.2
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 3.2e-243 845.5 758 59.6
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 9.2e-243 844.0 769 58.0
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 4.6e-242 841.6 786 56.6
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 6.6e-241 837.8 755 59.5
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 4.7e-239 831.6 758 59.6
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 6.8e-238 827.8 763 58.6
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.5e-237 826.6 760 57.5
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 1.5e-237 826.6 794 57.3
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 5.8e-237 824.7 760 59.6
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 7.6e-237 824.3 762 58.1
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 1.3e-236 823.5 761 57.0
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 6.0e-234 814.7 765 57.5
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 1.3e-233 813.5 774 57.4
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 1.7e-233 813.1 756 57.9
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 3.9e-233 812.0 758 59.0
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 7.3e-232 807.7 755 58.0
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 3.1e-230 802.4 758 56.9
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 3.8e-228 795.4 778 55.7
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 1.2e-226 790.4 738 60.0
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.2e-226 790.4 829 54.3
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 3.4e-221 772.3 777 53.2
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.3e-220 770.4 713 57.5
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 2.2e-220 769.6 757 55.2
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 4.2e-219 765.4 757 55.7
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 3.5e-218 762.3 747 54.8
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 3.0e-217 759.2 704 57.1
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 3.0e-217 759.2 777 52.6
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 1.5e-216 756.9 771 52.8
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 4.8e-215 751.9 747 54.5
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 4.0e-214 748.8 754 56.1
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 5.3e-214 748.4 739 54.5
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.2e-213 747.3 747 54.6
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 2.6e-213 746.1 753 54.1
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 4.5e-213 745.3 611 69.1
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 4.9e-212 741.9 754 56.0
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 6.5e-212 741.5 752 53.6
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 3.2e-211 739.2 493 80.5
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 4.6e-210 735.3 748 52.4
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 2.1e-207 726.5 926 47.9
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 1.4e-203 713.8 752 52.1
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 8.7e-201 704.5 739 50.7
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 1.1e-200 704.1 763 51.4
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 4.3e-200 702.2 783 50.7
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 2.0e-197 693.3 752 51.3
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 1.3e-191 674.1 765 51.1
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 5.2e-185 652.1 770 48.7
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.8e-183 645.6 654 55.0
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 7.7e-181 638.3 434 73.0
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 2.2e-175 620.2 763 48.2
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 2.2e-175 620.2 763 48.2
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 2.2e-175 620.2 763 48.2
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 7.0e-174 615.1 747 44.7
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 9.1e-174 614.8 717 49.2
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 5.9e-173 612.1 700 50.6
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 2.0e-165 587.0 613 53.8
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 1.7e-164 583.9 826 41.6
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.2e-152 544.7 545 54.7
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 4.9e-151 539.3 731 43.0
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 1.4e-150 537.7 399 67.4
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 3.5e-149 533.1 593 48.7
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 7.3e-147 525.4 455 57.8
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 9.8e-144 515.0 508 57.5
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 5.2e-137 492.7 546 52.7
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 8.7e-108 395.6 574 41.1
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 1.6e-106 391.3 260 72.3
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 3.9e-92 343.6 531 43.1
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 5.1e-76 290.0 141 99.3
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 6.9e-73 279.6 354 44.9
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 3.0e-68 264.2 194 65.5
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 2.6e-67 261.2 224 64.3
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 5.7e-67 260.0 141 88.7
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.4e-65 254.6 172 75.6
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 3.0e-60 237.7 134 87.3
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 4.8e-50 203.8 161 64.6
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.2e-45 189.1 118 77.1
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 1.3e-39 169.1 143 56.6
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.2e-37 162.5 114 67.5
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 1.2e-35 156.0 99 72.7
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-31 140.6 154 47.4
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 5.0e-31 140.6 769 23.3
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 2.1e-29 135.2 233 35.2
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 2.8e-29 134.8 86 70.9
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 7.0e-25 120.2 103 59.2
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 7.0e-25 120.2 74 75.7
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 6.0e-24 117.1 89 64.0
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 1.8e-20 105.5 536 22.9
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 5.8e-19 100.5 324 27.2
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 1.3e-18 99.4 88 51.1
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 1.3e-18 99.4 88 51.1
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 6.4e-18 97.1 149 37.6
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 2.6e-11 75.1 47 76.6
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.7e-10 72.4 58 56.9
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 7.8e-08 63.5 70 48.6


User provided reference genes

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