Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 0.0e+00 1521.9 802 100.0
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 0.0e+00 1483.4 802 97.9
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 0.0e+00 1407.5 801 92.4
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1369.8 804 90.3
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1335.9 802 88.7
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1253.8 811 84.1
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1144.4 797 74.9
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1136.7 803 74.1
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1109.7 811 72.4
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1105.9 843 69.9
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1102.0 801 71.7
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1099.0 806 71.8
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 0.0e+00 1098.6 793 71.8
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1094.7 805 72.0
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1094.0 797 71.4
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1092.4 800 71.5
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1091.3 802 72.9
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1090.1 794 71.3
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1086.2 800 71.1
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1085.5 798 71.6
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1083.9 807 70.9
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1083.9 798 71.6
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1082.4 813 71.2
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1078.9 800 71.6
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1077.4 807 70.4
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1076.6 806 71.8
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1075.1 806 71.6
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 5.5e-312 1074.3 789 71.6
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 1.1e-311 1072.8 806 70.7
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 6.6e-311 1070.5 808 71.3
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.4e-310 1069.3 799 70.7
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.4e-310 1069.3 796 70.1
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 9.2e-310 1066.6 800 70.6
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 2.1e-309 1065.4 805 71.6
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 3.5e-309 1064.7 804 70.3
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.9e-307 1058.9 818 69.9
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 5.6e-307 1057.4 804 70.1
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 5.6e-307 1057.4 798 69.8
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 1.2e-306 1056.2 801 69.5
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 1.6e-306 1055.8 805 70.2
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 2.8e-306 1055.0 809 70.0
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 8.1e-306 1053.5 803 69.6
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.1e-305 1053.1 820 69.0
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.4e-305 1052.7 805 69.9
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 2.4e-305 1052.0 803 70.1
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 5.2e-305 1050.8 871 66.1
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 5.2e-305 1050.8 805 69.6
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 2.6e-304 1048.5 801 69.5
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 8.4e-303 1043.5 819 68.7
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 3.2e-302 1041.6 795 69.1
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 4.2e-302 1041.2 802 69.0
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 7.1e-302 1040.4 798 68.4
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 2.1e-301 1038.9 760 71.6
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 4.6e-301 1037.7 799 68.7
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 1.7e-300 1035.8 796 69.0
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 3.0e-300 1035.0 799 68.8
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 3.9e-300 1034.6 796 68.7
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 5.1e-300 1034.2 796 69.8
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.9e-299 1032.3 803 68.1
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 3.3e-299 1031.6 799 67.8
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 4.3e-299 1031.2 799 68.6
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 7.3e-299 1030.4 788 69.3
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 9.6e-299 1030.0 819 67.8
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 9.6e-299 1030.0 803 67.9
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 1.3e-298 1029.6 797 69.0
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 2.8e-298 1028.5 802 69.1
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 4.8e-298 1027.7 810 67.8
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 1.8e-297 1025.8 847 65.3
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 3.1e-297 1025.0 797 68.6
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 2.4e-294 1015.4 799 68.1
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.1e-293 1012.3 802 67.0
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 3.5e-293 1011.5 801 67.9
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.3e-292 1008.8 789 68.8
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.5e-291 1006.1 788 68.7
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 1.5e-291 1006.1 801 67.4
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 1.5e-291 1006.1 802 67.2
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 5.6e-291 1004.2 765 69.3
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 5.6e-291 1004.2 672 77.7
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 2.4e-289 998.8 786 67.6
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 3.1e-289 998.4 787 68.4
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 4.0e-289 998.0 786 67.6
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 4.0e-289 998.0 786 67.6
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.5e-288 996.1 802 66.2
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 4.5e-288 994.6 896 61.4
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.7e-287 992.6 799 66.1
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 4.9e-287 991.1 799 66.7
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 6.4e-287 990.7 787 67.1
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 6.4e-287 990.7 787 67.1
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 2.4e-286 988.8 793 65.3
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 3.9e-284 981.5 789 66.4
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 5.1e-284 981.1 814 65.6
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 1.3e-276 956.4 798 63.5
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 5.1e-276 954.5 646 75.9
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 5.7e-275 951.0 748 67.6
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 1.1e-273 946.8 802 63.7
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.2e-272 943.3 784 65.1
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 6.5e-271 937.6 646 75.1
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.1e-270 936.8 646 74.9
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.1e-267 926.8 800 64.9
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 5.7e-267 924.5 786 64.9
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 3.4e-264 915.2 784 64.3
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 5.9e-264 914.4 785 63.7
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.1e-262 910.2 800 60.5
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 2.0e-259 899.4 781 63.3
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 7.0e-257 891.0 785 62.0
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 6.1e-253 877.9 810 59.6
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.3e-247 860.1 724 67.5
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 4.2e-246 855.1 786 61.3
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 6.3e-242 841.3 800 57.8
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 5.3e-241 838.2 828 56.6
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.2e-236 821.6 801 56.1
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 5.2e-220 768.5 649 63.5
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 2.5e-214 749.6 635 64.4
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 8.6e-207 724.5 480 78.5
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.7e-202 710.3 800 50.4
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.3e-191 674.1 844 46.7
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.3e-191 674.1 844 46.7
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 4.5e-179 632.5 865 44.4
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.2e-178 630.2 841 45.2
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.2e-165 585.1 652 49.8
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 4.0e-164 582.8 460 65.4
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.5e-161 573.5 620 54.0
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 5.5e-161 572.4 598 54.3
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.1e-160 570.5 544 59.4
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 7.4e-158 562.0 826 43.0
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 4.8e-157 559.3 435 66.7
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 1.8e-127 461.1 402 62.7
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 4.0e-103 380.2 615 43.1
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 1.0e-98 365.5 619 42.8
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 4.3e-81 307.0 213 75.6
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 5.8e-78 296.6 769 31.3
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 4.4e-70 270.4 291 55.0
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 2.1e-67 261.5 208 66.3
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 1.6e-64 251.9 198 66.7
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 2.8e-64 251.1 198 66.7
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 2.8e-64 251.1 198 66.7
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 9.9e-62 242.7 240 57.5
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 3.2e-60 237.7 212 60.8
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 4.0e-55 220.7 346 41.9
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 1.2e-54 219.2 474 35.7
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 5.3e-47 193.7 131 80.2
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 7.4e-41 173.3 117 70.1
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.8e-40 170.6 229 48.9
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 2.0e-33 148.7 141 56.0
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.3e-31 140.6 361 31.6
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 9.1e-31 139.8 86 73.3
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 9.1e-31 139.8 86 73.3
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.5e-30 139.0 90 72.2
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 1.7e-29 135.6 802 25.1
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.8e-29 134.4 130 58.5
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 5.9e-22 110.5 75 77.3
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.4e-18 99.4 145 47.6
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.7e-18 97.1 108 50.0
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 5.7e-17 94.0 93 50.5
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.6e-14 85.9 119 43.7
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 2.7e-14 85.1 75 58.7
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 3.5e-14 84.7 70 58.6
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 1.3e-13 82.8 101 47.5
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.8e-13 81.3 113 39.8
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 8.5e-13 80.1 56 71.4
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 7.2e-12 77.0 77 54.5
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 9.4e-12 76.6 181 33.1
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 4.7e-11 74.3 52 78.8
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 3.0e-10 71.6 60 56.7
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 1.2e-09 69.7 52 75.0
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 4.4e-09 67.8 51 72.5
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 1.7e-08 65.9 93 48.4
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 1.7e-08 65.9 52 67.3
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 1.8e-07 62.4 78 47.4
Oeu049880.1 Olea europaea HOM05D000526 ORTHO05D000956 4.5e-06 57.8 45 66.7


User provided reference genes

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