Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g009730 Solanum pennellii HOM05D005714 ORTHO05D006812 2.4e-38 161.8 85 100.0
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 6.4e-28 127.1 86 81.4
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 1.0e-25 119.8 75 81.3
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 2.8e-23 111.7 84 72.6
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 6.9e-22 107.1 87 67.8
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 3.4e-21 104.8 87 69.0
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 7.4e-16 87.0 84 59.5
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 5.9e-13 77.4 94 52.1
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 6.5e-12 73.9 87 50.6
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 5.5e-11 70.9 88 48.9
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 9.4e-11 70.1 90 50.0
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 9.4e-11 70.1 84 50.0
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 1.0e-09 66.6 90 47.8
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 3.0e-09 65.1 87 44.8
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 3.0e-09 65.1 85 50.6
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 3.9e-09 64.7 90 44.4
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.1e-08 63.2 90 44.4
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 1.1e-08 63.2 90 43.3
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.5e-08 62.0 89 44.9
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 2.5e-08 62.0 90 46.7
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 4.3e-08 61.2 89 43.8
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 5.7e-08 60.8 91 41.8
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 7.4e-08 60.5 90 44.4
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 9.7e-08 60.1 90 42.2
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.3e-07 59.7 90 42.2
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.3e-07 59.7 90 42.2
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 1.3e-07 59.7 88 43.2
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 1.3e-07 59.7 83 45.8
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 1.3e-07 59.7 86 44.2
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 1.3e-07 59.7 84 42.9
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 1.7e-07 59.3 90 40.0
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.7e-07 59.3 90 41.1
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 1.7e-07 59.3 89 47.2
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.7e-07 59.3 89 43.8
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 2.2e-07 58.9 91 44.0
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 2.2e-07 58.9 93 39.8
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 2.8e-07 58.5 86 43.0
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 2.8e-07 58.5 83 45.8
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 2.8e-07 58.5 89 39.3
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 3.7e-07 58.2 86 45.3
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 3.7e-07 58.2 91 40.7
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 3.7e-07 58.2 92 42.4
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 4.8e-07 57.8 78 46.2
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 6.3e-07 57.4 93 41.9
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 6.3e-07 57.4 95 40.0
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 8.2e-07 57.0 97 38.1
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 8.2e-07 57.0 87 42.5
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.1e-06 56.6 89 47.2
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.1e-06 56.6 89 47.2
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 1.1e-06 56.6 92 40.2
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.1e-06 56.6 87 42.5
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 1.1e-06 56.6 85 42.4
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 1.4e-06 56.2 81 40.7
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 1.4e-06 56.2 81 40.7
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 1.4e-06 56.2 88 44.3
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 1.8e-06 55.8 81 40.7
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.8e-06 55.8 90 43.3
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.8e-06 55.8 90 43.3
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 1.8e-06 55.8 87 36.8
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 1.8e-06 55.8 90 41.1
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 2.4e-06 55.5 81 42.0
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 2.4e-06 55.5 91 39.6
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 3.1e-06 55.1 86 41.9
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 3.1e-06 55.1 94 38.3
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 4.1e-06 54.7 93 37.6
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 6.9e-06 53.9 87 37.9
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 6.9e-06 53.9 86 40.7
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 9.1e-06 53.5 81 40.7
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 9.1e-06 53.5 43 60.5
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 9.1e-06 53.5 84 38.1


User provided reference genes

Program Settings