Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 0.0e+00 2520.7 1290 100.0
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 0.0e+00 2467.2 1291 96.6
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 0.0e+00 2215.7 1282 89.9
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 0.0e+00 2059.3 1318 81.6
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 2003.0 1321 78.7
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1996.5 1322 78.4
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 0.0e+00 1906.0 1329 76.1
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 0.0e+00 1192.6 1342 49.7
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1163.7 1350 48.9
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1155.6 1343 48.6
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1129.4 1326 48.1
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1119.8 1341 46.5
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 0.0e+00 1119.0 1217 50.8
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 0.0e+00 1118.6 1238 50.2
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1110.9 1328 47.5
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 3.5e-311 1072.0 1324 47.4
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 4.4e-311 1071.6 1456 42.5
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 1.9e-309 1066.2 1347 46.2
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 9.6e-309 1063.9 1324 46.1
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 3.8e-305 1052.0 1319 47.2
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 8.4e-305 1050.8 1329 45.1
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 7.9e-303 1044.3 1244 46.6
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 2.8e-300 1035.8 1310 45.6
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 1.4e-299 1033.5 1342 44.3
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.1e-296 1023.8 1231 47.5
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 2.1e-295 1019.6 1340 44.7
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 7.9e-295 1017.7 1333 44.6
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 1.4e-294 1016.9 1339 45.9
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 2.0e-293 1013.1 1337 43.6
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 1.2e-290 1003.8 1276 45.6
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 2.2e-289 999.6 1335 43.8
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 2.9e-289 999.2 1340 43.7
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 2.5e-288 996.1 1327 43.5
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 2.1e-287 993.0 1330 43.4
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 5.1e-286 988.4 1355 43.2
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 6.7e-286 988.0 1361 43.2
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 5.7e-285 984.9 1349 42.7
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 2.2e-284 983.0 1323 45.0
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.5e-282 976.9 1323 45.0
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 1.5e-282 976.9 1313 44.0
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 3.5e-282 975.7 1338 44.8
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 2.2e-281 973.0 1339 44.4
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 5.5e-280 968.4 1314 42.7
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 8.0e-279 964.5 1345 41.2
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 1.0e-278 964.1 1324 44.9
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 3.9e-278 962.2 1324 44.0
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 5.2e-278 961.8 1266 44.1
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 8.8e-278 961.1 1337 42.2
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 5.7e-277 958.4 1273 44.6
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 2.3e-270 936.4 1323 42.8
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 3.0e-270 936.0 1325 42.9
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 8.8e-270 934.5 1202 45.8
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 8.3e-260 901.4 1310 42.5
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 6.1e-255 885.2 1337 40.8
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 2.4e-251 873.2 1302 42.4
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 2.5e-248 863.2 1188 43.2
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 2.5e-248 863.2 1308 42.0
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 6.8e-246 855.1 1315 41.1
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 3.4e-245 852.8 1306 42.1
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 8.3e-244 848.2 1345 38.3
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 9.2e-243 844.7 1234 42.1
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 3.0e-241 839.7 1330 41.4
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 1.1e-238 831.2 1296 41.2
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 1.1e-238 831.2 1301 41.0
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 1.8e-238 830.5 1347 39.4
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 5.8e-237 825.5 1295 40.1
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 1.2e-234 817.8 1317 39.4
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 4.3e-232 809.3 1337 39.5
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 7.3e-232 808.5 1303 40.4
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 1.4e-230 804.3 1313 38.9
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 2.0e-229 800.4 1276 40.9
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 1.2e-226 791.2 1289 40.3
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 3.3e-224 783.1 1326 38.5
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 7.8e-218 761.9 1280 37.3
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 4.4e-213 746.1 1309 38.0
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 3.3e-208 729.9 1311 38.1
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 5.6e-208 729.2 1273 37.9
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 4.8e-207 726.1 1320 36.3
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 5.8e-197 692.6 1318 35.3
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 4.9e-196 689.5 1106 39.8
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.6e-194 684.5 1287 35.3
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 1.0e-180 638.6 1218 36.0
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 3.6e-178 630.2 1038 39.9
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 5.1e-177 626.3 1124 35.4
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.8e-175 620.5 1177 35.1
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 5.7e-168 596.3 1087 35.2
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.4e-166 591.7 1212 34.0
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 2.4e-166 590.9 644 48.6
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 7.7e-165 585.9 1218 34.2
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 1.7e-164 584.7 1279 32.9
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 5.0e-164 583.2 709 46.8
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 1.4e-161 575.1 681 48.5
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 6.3e-159 566.2 1229 32.8
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 2.2e-156 557.8 692 47.5
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 1.8e-153 548.1 703 46.2
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 5.4e-134 483.4 573 45.9
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 4.0e-121 440.7 783 34.2
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 1.2e-117 429.1 601 41.9
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 3.6e-114 417.5 705 38.6
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 2.0e-112 411.8 802 37.3
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 4.6e-109 400.6 1283 28.9
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 9.6e-107 392.9 762 35.3
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 2.6e-104 384.8 640 40.6
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 2.9e-103 381.3 661 39.3
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 3.9e-100 370.9 717 36.3
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 2.1e-90 338.6 804 29.6
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 4.9e-87 327.4 319 53.0
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 2.4e-86 325.1 802 29.1
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 9.6e-75 286.6 522 33.9
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.8e-60 239.2 757 25.4
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 3.0e-60 238.4 354 39.3
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.6e-40 172.9 296 37.5
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 7.2e-38 164.1 262 39.3
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 1.8e-36 159.5 263 35.7
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 8.6e-31 140.6 523 30.0
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 1.1e-30 140.2 532 29.1
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 2.8e-29 135.6 110 60.0
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 2.0e-24 119.4 286 30.8
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 1.6e-21 109.8 366 24.6
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 4.7e-21 108.2 373 24.4
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 3.0e-20 105.5 403 24.6
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 4.0e-20 105.1 467 28.3
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 4.0e-20 105.1 541 29.8
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 3.7e-18 98.6 528 27.7
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 8.3e-18 97.4 528 27.5
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 1.1e-17 97.1 543 26.7
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 1.4e-17 96.7 527 27.5
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 2.4e-17 95.9 334 25.1
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 2.4e-17 95.9 511 26.2
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 2.4e-17 95.9 511 26.2
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 2.1e-13 82.8 428 25.2
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 1.4e-12 80.1 461 27.8
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 2.0e-11 76.3 171 31.0
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 3.7e-10 72.0 139 30.2
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 2.4e-09 69.3 517 22.2
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.6e-08 66.6 262 32.8
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.6e-08 66.6 262 32.8
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 9.5e-06 57.4 123 25.2


User provided reference genes

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