Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g007910 Solanum pennellii HOM05D007513 ORTHO05D008148 1.1e-67 260.0 146 100.0
Solyc03g044080.4 Solanum lycopersicum HOM05D007513 ORTHO05D008148 7.9e-42 174.1 145 73.8
PGSC0003DMG400014868 Solanum tuberosum HOM05D007513 ORTHO05D008148 1.8e-25 119.8 70 88.6
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 2.6e-21 105.9 69 76.8
Peaxi162Scf00118g02024 Petunia axillaris HOM05D007513 ORTHO05D008148 1.4e-19 100.1 92 63.0
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 2.3e-17 92.8 101 53.5
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 2.7e-10 69.3 69 56.5
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 4.7e-10 68.6 69 55.1
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.0e-09 67.4 74 54.1
Cpa.g.sc6.31 Carica papaya HOM05D007513 ORTHO05D008148 3.0e-09 65.9 66 59.1
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 4.0e-09 65.5 71 47.9
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 4.0e-09 65.5 53 60.4
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 8.8e-09 64.3 65 52.3
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 1.2e-08 63.9 60 60.0
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 1.5e-08 63.5 53 60.4
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.5e-08 63.5 69 49.3
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 2.0e-08 63.2 59 55.9
EL10Ac8g20627 Beta vulgaris HOM05D007513 ORTHO05D008148 2.6e-08 62.8 68 48.5
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 2.6e-08 62.8 46 63.0
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 4.4e-08 62.0 52 59.6
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 5.7e-08 61.6 66 51.5
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 7.5e-08 61.2 61 54.1
Aa31LG6G14500 Aethionema arabicum HOM05D007513 ORTHO05D008148 7.5e-08 61.2 60 56.7
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 7.5e-08 61.2 62 53.2
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 9.7e-08 60.8 61 52.5
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 9.7e-08 60.8 67 55.2
MELO3C030975.2 Cucumis melo HOM05D007513 ORTHO05D008148 9.7e-08 60.8 61 52.5
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 9.7e-08 60.8 75 49.3
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 1.3e-07 60.5 61 52.5
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 1.7e-07 60.1 61 52.5
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 1.7e-07 60.1 69 50.7
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 3.7e-07 58.9 71 46.5
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 4.8e-07 58.5 55 50.9
Gohir.D03G027900 Gossypium hirsutum HOM05D007513 ORTHO05D008148 4.8e-07 58.5 52 55.8
Thhalv10027185m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 6.3e-07 58.2 62 54.8
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 8.2e-07 57.8 69 44.9
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 8.2e-07 57.8 53 50.9
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 8.2e-07 57.8 51 56.9
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 8.2e-07 57.8 51 56.9
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 1.1e-06 57.4 54 53.7
Ah.14g088990 Amaranthus hybridus HOM05D007513 ORTHO05D008148 1.4e-06 57.0 68 50.0
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 1.4e-06 57.0 70 47.1
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 1.8e-06 56.6 53 50.9
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 1.8e-06 56.6 53 50.9
Thhalv10000379m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 1.8e-06 56.6 47 57.4
Prupe.6G222400 Prunus persica HOM05D007513 ORTHO05D008148 1.8e-06 56.6 46 63.0
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 1.8e-06 56.6 61 49.2
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 2.4e-06 56.2 59 49.2
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 3.1e-06 55.8 62 45.2
MD02G1183800 Malus domestica HOM05D007513 ORTHO05D008148 3.1e-06 55.8 46 60.9
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 4.1e-06 55.5 71 45.1
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 4.1e-06 55.5 62 46.8
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 4.1e-06 55.5 66 43.9
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 4.1e-06 55.5 61 52.5
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 5.3e-06 55.1 61 50.8
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 5.3e-06 55.1 46 58.7
THA.LOC104807627 Tarenaya hassleriana HOM05D007513 ORTHO05D008148 5.3e-06 55.1 65 47.7
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 5.3e-06 55.1 59 45.8
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 7.0e-06 54.7 47 53.2
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 7.0e-06 54.7 52 50.0
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 7.0e-06 54.7 46 56.5
Aqoxy7G03437 Aquilegia oxysepala HOM05D007513 ORTHO05D008148 9.1e-06 54.3 66 50.0
A08p22690 Brassica napus HOM05D007513 ORTHO05D008148 9.1e-06 54.3 62 51.6
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 9.1e-06 54.3 47 53.2
Os03g0205150 Oryza sativa ssp. japonica HOM05D007513 ORTHO05D008148 9.1e-06 54.3 55 49.1


User provided reference genes

Program Settings