Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 6.7e-78 293.9 142 100.0
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 7.6e-74 280.4 151 92.1
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 3.3e-69 265.0 149 87.2
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 2.5e-56 222.2 148 73.0
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 1.2e-39 166.8 143 53.1
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.2e-39 166.8 142 54.9
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.2e-39 166.8 141 55.3
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 5.2e-38 161.4 137 54.0
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 8.8e-38 160.6 138 54.3
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 8.8e-38 160.6 135 57.0
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 1.5e-37 159.8 138 53.6
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 2.0e-37 159.5 138 53.6
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 2.0e-37 159.5 136 53.7
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 3.3e-37 158.7 141 53.2
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 4.4e-37 158.3 139 54.0
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 4.4e-37 158.3 139 54.0
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.4e-37 158.3 139 54.0
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.4e-37 158.3 135 56.3
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 4.4e-37 158.3 136 55.9
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 4.4e-37 158.3 136 55.1
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.7e-37 157.9 140 52.9
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.7e-37 157.9 140 52.9
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 9.7e-37 157.1 136 55.1
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.7e-37 157.1 137 54.7
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.7e-37 157.1 144 51.4
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 9.7e-37 157.1 140 51.4
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.3e-36 156.8 137 55.5
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.3e-36 156.8 141 52.5
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.7e-36 156.4 136 52.2
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.7e-36 156.4 136 53.7
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.2e-36 156.0 135 54.8
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 2.8e-36 155.6 136 53.7
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 3.7e-36 155.2 140 53.6
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 3.7e-36 155.2 140 53.6
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.7e-36 155.2 135 55.6
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 3.7e-36 155.2 137 52.6
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 4.8e-36 154.8 101 79.2
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 6.3e-36 154.5 137 51.8
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 6.3e-36 154.5 140 53.6
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 8.2e-36 154.1 139 54.0
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 1.1e-35 153.7 140 53.6
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 1.4e-35 153.3 143 53.1
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 1.4e-35 153.3 139 52.5
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 1.4e-35 153.3 139 49.6
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.4e-35 153.3 136 52.9
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 1.8e-35 152.9 135 54.1
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 2.4e-35 152.5 139 53.2
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 2.4e-35 152.5 139 53.2
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 3.1e-35 152.1 136 51.5
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 3.1e-35 152.1 136 52.2
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 3.1e-35 152.1 135 51.1
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 3.1e-35 152.1 138 52.9
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 3.1e-35 152.1 138 52.9
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 3.1e-35 152.1 138 52.9
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 4.1e-35 151.8 142 52.1
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 4.1e-35 151.8 136 52.9
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 4.1e-35 151.8 140 50.0
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 5.3e-35 151.4 144 50.7
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 5.3e-35 151.4 136 52.2
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 5.3e-35 151.4 136 52.9
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 5.3e-35 151.4 136 51.5
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 7.0e-35 151.0 138 52.2
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.0e-35 151.0 138 52.2
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 7.0e-35 151.0 145 49.0
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 9.1e-35 150.6 138 50.7
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 9.1e-35 150.6 138 50.7
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 9.1e-35 150.6 133 53.4
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 9.1e-35 150.6 138 52.2
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 1.2e-34 150.2 136 50.7
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 1.2e-34 150.2 139 53.2
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.6e-34 149.8 139 50.4
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.6e-34 149.8 139 54.7
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 1.6e-34 149.8 146 52.7
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 2.0e-34 149.4 137 51.1
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.0e-34 149.4 142 50.0
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.0e-34 149.4 142 50.0
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 2.0e-34 149.4 139 49.6
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 2.6e-34 149.1 140 50.0
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 2.6e-34 149.1 139 53.2
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 3.5e-34 148.7 137 50.4
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 3.5e-34 148.7 136 50.0
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 4.5e-34 148.3 143 52.4
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 5.9e-34 147.9 141 49.6
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 5.9e-34 147.9 136 48.5
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 7.7e-34 147.5 139 53.2
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 7.7e-34 147.5 136 48.5
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 7.7e-34 147.5 136 50.7
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 7.7e-34 147.5 136 51.5
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 7.7e-34 147.5 136 50.7
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 1.3e-33 146.7 143 50.3
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 1.3e-33 146.7 136 53.7
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.3e-33 146.7 139 46.8
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.3e-33 146.7 139 46.8
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.3e-33 146.7 140 49.3
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.9e-33 145.6 139 46.0
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 2.9e-33 145.6 137 53.3
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.8e-33 145.2 136 49.3
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 6.5e-33 144.4 137 49.6
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 6.5e-33 144.4 137 49.6
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 6.5e-33 144.4 136 49.3
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 6.5e-33 144.4 135 54.8
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.1e-32 143.7 139 48.9
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 1.5e-32 143.3 138 50.7
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 1.5e-32 143.3 134 48.5
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.5e-32 143.3 136 47.1
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 2.5e-32 142.5 139 50.4
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 2.5e-32 142.5 146 48.6
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 2.5e-32 142.5 139 48.9
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 2.5e-32 142.5 141 48.9
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 2.5e-32 142.5 144 50.0
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 2.5e-32 142.5 146 50.0
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 3.2e-32 142.1 142 49.3
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 4.2e-32 141.7 134 49.3
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 4.2e-32 141.7 174 43.7
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 4.2e-32 141.7 136 51.5
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 5.5e-32 141.4 139 49.6
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 5.5e-32 141.4 138 47.8
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 7.2e-32 141.0 146 47.9
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 1.2e-31 140.2 142 47.9
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 2.1e-31 139.4 129 51.9
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 2.1e-31 139.4 140 48.6
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 2.7e-31 139.0 136 48.5
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 3.6e-31 138.7 121 54.5
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.7e-31 138.3 136 47.1
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 8.0e-31 137.5 137 47.4
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.4e-30 136.7 136 49.3
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.8e-30 136.3 145 42.8
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 4.0e-30 135.2 133 47.4
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 5.2e-30 134.8 136 47.8
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 6.7e-30 134.4 130 50.0
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.2e-29 133.7 121 53.7
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.6e-29 132.5 137 46.7
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 4.4e-29 131.7 143 46.9
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.3e-28 130.2 136 47.1
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.7e-28 129.8 203 38.4
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 4.8e-28 128.3 137 47.4
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 4.8e-28 128.3 131 46.6
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 1.8e-27 126.3 144 45.1
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 2.4e-27 125.9 143 42.7
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 2.4e-27 125.9 136 43.4
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 2.4e-27 125.9 138 42.8
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 5.9e-26 121.3 118 51.7
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 1.3e-25 120.2 114 53.5
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 1.7e-25 119.8 145 40.7
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.8e-25 118.6 131 45.8
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 6.5e-25 117.9 127 46.5
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 6.5e-25 117.9 136 45.6
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.6e-23 113.2 97 55.7
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 2.1e-23 112.8 98 53.1
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 4.7e-23 111.7 135 40.0
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 8.0e-23 110.9 138 43.5
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.4e-22 110.2 143 42.0
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.2e-21 107.1 119 51.3
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 1.5e-21 106.7 134 37.3
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 2.3e-17 92.8 123 43.9
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 2.9e-17 92.4 121 38.8
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 6.5e-17 91.3 57 78.9
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 1.0e-14 84.0 126 43.7
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 2.6e-13 79.3 66 59.1
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 4.4e-13 78.6 124 35.5
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.3e-12 77.0 69 53.6
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 2.4e-11 72.8 96 39.6
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 3.5e-10 68.9 61 55.7
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 2.9e-09 65.9 55 56.4
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 4.3e-08 62.0 41 51.2
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.2e-07 60.5 77 37.7
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 4.7e-07 58.5 36 52.8


User provided reference genes

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