Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g007510 Solanum pennellii HOM05D008294 ORTHO05D010468 6.5e-47 190.3 89 100.0
PGSC0003DMG400016702 Solanum tuberosum HOM05D008294 ORTHO05D010468 9.4e-46 186.4 89 96.6
Nitab4.5_0002366g0040 Nicotiana tabacum HOM05D008294 ORTHO05D010468 2.8e-26 121.7 104 60.6
Peaxi162Scf00118g00016 Petunia axillaris HOM05D008294 ORTHO05D010468 5.9e-24 114.0 93 63.4
Solyc02g091380.1 Solanum lycopersicum HOM05D008294 ORTHO05D010468 6.1e-21 104.0 107 52.3
Sopen02g036000 Solanum pennellii HOM05D008294 ORTHO05D010468 6.1e-21 104.0 107 52.3
PGSC0003DMG400030645 Solanum tuberosum HOM05D008294 ORTHO05D010468 1.4e-20 102.8 105 52.4
Nitab4.5_0002248g0070 Nicotiana tabacum HOM05D008294 ORTHO05D010468 1.8e-17 92.4 98 53.1
Nitab4.5_0004399g0030 Nicotiana tabacum HOM05D008294 ORTHO05D010468 1.2e-16 89.7 105 48.6
ECA238G3741 Erigeron canadensis HOM05D008294 ORTHO05D010468 2.0e-16 89.0 100 47.0
HanXRQChr14g0439951 Helianthus annuus HOM05D008294 ORTHO05D010468 2.7e-16 88.6 98 46.9
SGA_v2.0_scaffold329G48860 Striga asiatica HOM05D008294 ORTHO05D010468 3.5e-16 88.2 103 44.7
Cc07_g08180 Coffea canephora HOM05D008294 ORTHO05D010468 5.9e-16 87.4 102 44.1
SalBow7G4521 Salvia bowleyana HOM05D008294 ORTHO05D010468 1.5e-14 82.8 105 43.8
Oeu054753.1 Olea europaea HOM05D008294 ORTHO05D010468 2.5e-14 82.0 109 40.4
MSTRG.3520 Avicennia marina HOM05D008294 ORTHO05D010468 3.3e-14 81.6 114 43.0
Gorai.008G058300 Gossypium raimondii HOM05D008294 ORTHO05D010468 9.5e-14 80.1 97 44.3
Lsat_1_v5_gn_2_81341 Lactuca sativa HOM05D008294 ORTHO05D010468 2.8e-13 78.6 99 44.4
GSVIVG01030864001 Vitis vinifera HOM05D008294 ORTHO05D010468 3.6e-13 78.2 99 42.4
DCAR_025875 Daucus carota HOM05D008294 ORTHO05D010468 1.4e-12 76.3 114 40.4
Sabra17G0107200 Salix brachista HOM05D008294 ORTHO05D010468 5.2e-12 74.3 95 38.9
Thecc.04G121200 Theobroma cacao HOM05D008294 ORTHO05D010468 5.2e-12 74.3 96 37.5
Manes.01G115600 Manihot esculenta HOM05D008294 ORTHO05D010468 6.8e-12 73.9 98 42.9
TAR017G0001 Trochodendron aralioides HOM05D008294 ORTHO05D010468 6.8e-12 73.9 94 39.4
Eucgr.F02821 Eucalyptus grandis HOM05D008294 ORTHO05D010468 1.2e-11 73.2 90 45.6
Nn3g18213 Nelumbo nucifera HOM05D008294 ORTHO05D010468 1.2e-11 73.2 56 60.7
QL11p004113 Quercus lobata HOM05D008294 ORTHO05D010468 1.2e-11 73.2 104 40.4
Lalb_Chr17g0346181 Lupinus albus HOM05D008294 ORTHO05D010468 2.0e-11 72.4 102 38.2
Potri.004G088300 Populus trichocarpa HOM05D008294 ORTHO05D010468 2.6e-11 72.0 98 39.8
Migut.L00469 Erythranthe guttata HOM05D008294 ORTHO05D010468 3.4e-11 71.6 118 39.0
MBI10_g08546_MAGBIO Magnolia biondii HOM05D008294 ORTHO05D010468 3.4e-11 71.6 56 55.4
ClCG05G010930 Citrullus lanatus HOM05D008294 ORTHO05D010468 4.4e-11 71.2 102 37.3
Ciclev10013091m.g Citrus clementina HOM05D008294 ORTHO05D010468 1.3e-10 69.7 100 42.0
Potri.017G128700 Populus trichocarpa HOM05D008294 ORTHO05D010468 2.2e-10 68.9 107 37.4
Atru.chr13.2285 Acer truncatum HOM05D008294 ORTHO05D010468 6.3e-10 67.4 99 36.4
MELO3C020292.2 Cucumis melo HOM05D008294 ORTHO05D010468 6.3e-10 67.4 103 36.9
Cpa.g.sc604.2 Carica papaya HOM05D008294 ORTHO05D010468 8.3e-10 67.0 94 35.1
CsaV3_3G021650 Cucumis sativus L. HOM05D008294 ORTHO05D010468 2.4e-09 65.5 108 34.3
AUR62023240 Chenopodium quinoa HOM05D008294 ORTHO05D010468 3.1e-09 65.1 121 36.4
Sed0009315 Sechium edule HOM05D008294 ORTHO05D010468 3.1e-09 65.1 93 37.6
Lalb_Chr04g0251301 Lupinus albus HOM05D008294 ORTHO05D010468 4.1e-09 64.7 105 34.3
Gohir.D12G055400 Gossypium hirsutum HOM05D008294 ORTHO05D010468 7.0e-09 63.9 89 39.3
EL10Ac2g04485 Beta vulgaris HOM05D008294 ORTHO05D010468 4.5e-08 61.2 120 32.5
Sc10g0000850 Simmondsia chinensis HOM05D008294 ORTHO05D010468 4.5e-08 61.2 87 42.5
Medtr8g035940 Medicago truncatula HOM05D002803 ORTHO05D003089 1.0e-07 60.1 44 50.0
Migut.H00270 Erythranthe guttata HOM05D008294 ORTHO05D010468 2.3e-07 58.9 62 41.9
Prupe.3G159000 Prunus persica HOM05D008294 ORTHO05D010468 2.9e-07 58.5 80 38.8
Lj5g0014631 Lotus japonicus HOM05D002803 ORTHO05D003089 3.9e-07 58.2 45 48.9
Lj1g0007014 Lotus japonicus HOM05D008294 ORTHO05D010468 5.0e-07 57.8 91 39.6
Ah.16g101330 Amaranthus hybridus HOM05D008294 ORTHO05D010468 6.6e-07 57.4 31 74.2
Glyma.17G018400 Glycine max HOM05D002803 ORTHO05D003089 8.6e-07 57.0 53 41.5
arahy.Tifrunner.gnm1.ann1.HG0CBG Arachis hypogaea HOM05D008294 ORTHO05D010468 1.5e-06 56.2 115 27.8
Glyma.02G246900 Glycine max HOM05D008294 ORTHO05D010468 1.5e-06 56.2 99 33.3
arahy.Tifrunner.gnm1.ann1.RHD4AQ Arachis hypogaea HOM05D008294 ORTHO05D010468 1.9e-06 55.8 115 27.8
TPR.G11262 Trifolium pratense HOM05D002803 ORTHO05D003089 1.9e-06 55.8 43 46.5
Zm00001eb334540 Zea mays HOM05D008294 ORTHO05D010468 1.9e-06 55.8 34 64.7
Pp3c23_15940 Physcomitrium patens HOM05D035914 ORTHO05D050329 2.5e-06 55.5 38 55.3
TPR.G9792 Trifolium pratense HOM05D002803 ORTHO05D003089 2.5e-06 55.5 41 51.2
Rhsim08G0138100 Rhododendron simsii HOM05D002803 ORTHO05D003089 3.3e-06 55.1 37 56.8
TPR.G9796 Trifolium pratense HOM05D002803 ORTHO05D003089 5.6e-06 54.3 59 40.7
Glyma.14G069300 Glycine max HOM05D008294 ORTHO05D010468 7.3e-06 53.9 99 32.3
Pp3c20_15420 Physcomitrium patens HOM05D035914 ORTHO05D050329 7.3e-06 53.9 38 52.6


User provided reference genes

Program Settings