Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g007300 Solanum pennellii HOM05D004236 ORTHO05D004903 4.1e-75 284.6 143 100.0
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 2.2e-57 225.7 123 92.7
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 5.7e-53 211.1 123 86.2
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 3.1e-51 205.3 123 85.4
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 3.6e-47 191.8 123 75.6
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 6.1e-47 191.0 124 75.0
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 8.0e-47 190.7 123 77.2
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 1.4e-46 189.9 123 74.8
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 2.3e-46 189.1 123 74.8
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 6.8e-46 187.6 123 75.6
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 1.5e-45 186.4 124 73.4
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 3.4e-45 185.3 123 76.4
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 4.4e-45 184.9 124 75.8
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 7.5e-45 184.1 125 76.0
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 9.8e-45 183.7 123 74.0
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 9.8e-45 183.7 123 74.0
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 9.8e-45 183.7 124 75.0
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 1.7e-44 183.0 123 74.0
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.7e-44 183.0 124 75.0
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 2.2e-44 182.6 123 72.4
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 2.2e-44 182.6 126 73.0
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 2.2e-44 182.6 124 71.0
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 2.8e-44 182.2 126 73.8
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 2.8e-44 182.2 124 73.4
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 6.3e-44 181.0 123 71.5
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 1.1e-43 180.3 123 72.4
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 1.1e-43 180.3 126 72.2
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 1.1e-43 180.3 124 73.4
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 1.1e-43 180.3 126 73.8
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 1.4e-43 179.9 126 72.2
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 1.8e-43 179.5 128 72.7
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 1.8e-43 179.5 124 74.2
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 2.4e-43 179.1 126 71.4
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 2.4e-43 179.1 126 71.4
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 5.4e-43 177.9 122 74.6
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 5.4e-43 177.9 122 74.6
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 1.2e-42 176.8 115 74.8
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 1.2e-42 176.8 124 72.6
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 1.2e-42 176.8 123 68.3
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 2.0e-42 176.0 123 69.9
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 2.0e-42 176.0 108 84.3
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 2.7e-42 175.6 123 68.3
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 3.5e-42 175.3 128 68.8
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 4.5e-42 174.9 129 71.3
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 5.9e-42 174.5 123 69.9
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 7.7e-42 174.1 123 67.5
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 7.7e-42 174.1 124 71.8
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 7.7e-42 174.1 126 71.4
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 1.0e-41 173.7 124 71.0
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 1.0e-41 173.7 124 71.0
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 1.3e-41 173.3 126 69.8
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 1.3e-41 173.3 126 69.0
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.7e-41 172.9 124 68.5
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.7e-41 172.9 124 68.5
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 2.9e-41 172.2 127 69.3
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 2.9e-41 172.2 126 68.3
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 2.9e-41 172.2 124 68.5
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 2.9e-41 172.2 124 68.5
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 3.8e-41 171.8 121 70.2
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 5.0e-41 171.4 128 69.5
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 6.5e-41 171.0 126 67.5
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 8.6e-41 170.6 125 68.0
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 1.1e-40 170.2 125 68.0
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 1.1e-40 170.2 125 68.8
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 1.5e-40 169.9 128 65.6
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 1.5e-40 169.9 125 68.0
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 1.5e-40 169.9 128 67.2
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 2.5e-40 169.1 136 64.7
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 3.3e-40 168.7 126 67.5
BcaB08g34729 Brassica carinata HOM05D000498 ORTHO05D000354 4.2e-40 168.3 126 65.9
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 4.2e-40 168.3 130 68.5
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 4.2e-40 168.3 126 69.0
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 4.2e-40 168.3 130 70.8
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 4.2e-40 168.3 139 63.3
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 5.5e-40 167.9 125 64.0
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 7.2e-40 167.5 123 65.0
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 1.6e-39 166.4 127 65.4
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 2.8e-39 165.6 123 65.0
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 2.8e-39 165.6 127 67.7
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.8e-39 165.6 124 66.1
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 3.6e-39 165.2 127 67.7
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 3.6e-39 165.2 123 65.0
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 6.1e-39 164.5 123 65.0
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 8.0e-39 164.1 113 71.7
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 1.0e-38 163.7 123 67.5
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 1.0e-38 163.7 128 64.8
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 1.4e-38 163.3 112 69.6
Oeu048228.1 Olea europaea HOM05D004236 ORTHO05D004903 1.4e-38 163.3 115 71.3
BcaB06g28281 Brassica carinata HOM05D004236 ORTHO05D004903 1.8e-38 162.9 126 65.9
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 3.0e-38 162.2 123 63.4
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 4.0e-38 161.8 131 63.4
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 4.0e-38 161.8 131 63.4
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 4.0e-38 161.8 123 63.4
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 4.0e-38 161.8 127 65.4
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 6.8e-38 161.0 126 64.3
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 6.8e-38 161.0 116 71.6
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 3.4e-37 158.7 125 64.8
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 3.4e-37 158.7 131 62.6
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 4.4e-37 158.3 131 61.8
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 5.7e-37 157.9 95 78.9
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 2.2e-36 156.0 125 64.8
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 4.9e-36 154.8 131 61.8
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 4.9e-36 154.8 132 61.4
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 6.3e-36 154.5 133 61.7
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 6.3e-36 154.5 125 64.8
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 8.3e-36 154.1 132 62.9
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 1.1e-35 153.7 132 61.4
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 4.1e-35 151.8 133 60.9
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 4.1e-35 151.8 132 61.4
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 4.1e-35 151.8 132 61.4
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 7.0e-35 151.0 96 77.1
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 7.0e-35 151.0 124 62.9
Sed0017902 Sechium edule HOM05D004236 ORTHO05D004903 2.0e-34 149.4 119 66.4
THA.LOC104822507 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 2.3e-33 146.0 117 66.7
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 2.9e-33 145.6 126 60.3
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 6.6e-33 144.4 201 43.8
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 2.1e-31 139.4 115 61.7
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 6.1e-31 137.9 117 56.4
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 8.0e-31 137.5 127 56.7
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 3.0e-30 135.6 123 59.3
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 4.0e-30 135.2 123 52.8
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 2.6e-29 132.5 145 49.7
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 9.8e-29 130.6 131 51.9
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 9.8e-29 130.6 131 51.9
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.3e-28 130.2 131 51.9
HPP92_027367 Vanilla planifolia HOM05D000680 ORTHO05D000738 1.1e-27 127.1 135 48.9
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 9.2e-27 124.0 124 57.3
Nitab4.5_0000901g0080 Nicotiana tabacum HOM05D004236 ORTHO05D000001 2.8e-23 112.5 72 86.1
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 2.8e-23 112.5 96 58.3
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 4.7e-23 111.7 72 84.7
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.1e-22 110.5 70 87.1
HPP92_023117 Vanilla planifolia HOM05D004236 ORTHO05D004903 2.4e-19 99.4 120 48.3
Zm00001eb334840 Zea mays HOM05D004236 ORTHO05D004903 7.0e-19 97.8 145 41.4
BcaB01g01715 Brassica carinata HOM05D004236 ORTHO05D004903 1.2e-18 97.1 83 62.7
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 1.1e-14 84.0 98 48.0
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 1.1e-14 84.0 47 76.6
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 1.8e-14 83.2 159 35.8
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 1.8e-14 83.2 108 42.6
Actinidia13574 Actinidia chinensis HOM05D004236 ORTHO05D004903 6.8e-14 81.3 74 60.8
Potri.012G068550 Populus trichocarpa HOM05D004236 ORTHO05D004903 2.0e-13 79.7 80 61.2
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 2.9e-12 75.9 76 55.3
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.4e-11 73.6 38 81.6
SHI07812 Sapria himalayana HOM05D004236 ORTHO05D004903 5.6e-08 61.6 73 49.3
SHI07811 Sapria himalayana HOM05D004236 ORTHO05D004903 3.6e-07 58.9 43 55.8
unitig_736.g22563 Utricularia gibba HOM05D004236 ORTHO05D004903 5.2e-06 55.1 48 58.3


User provided reference genes

Program Settings