Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 3.1e-122 441.8 221 100.0
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 6.6e-117 424.1 222 96.4
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.1e-109 397.9 227 89.0
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.9e-63 246.5 224 58.9
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 4.2e-63 245.4 232 55.2
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 7.2e-63 244.6 221 58.4
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.2e-62 243.8 224 58.0
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.1e-62 243.0 238 56.7
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 2.1e-62 243.0 225 60.0
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.6e-62 242.3 212 60.8
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 4.7e-62 241.9 244 55.7
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.4e-61 240.4 236 54.2
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 4.0e-61 238.8 217 58.5
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.2e-61 238.4 178 68.5
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.1e-60 237.3 182 63.7
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.5e-60 236.9 192 65.1
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.0e-60 236.5 179 64.8
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 2.6e-60 236.1 236 53.0
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.6e-60 236.1 181 65.2
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 4.4e-60 235.3 236 53.4
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-59 233.8 182 65.9
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.2e-59 233.0 173 64.2
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 4.8e-59 231.9 245 52.7
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 6.3e-59 231.5 214 56.5
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.1e-58 230.7 206 58.3
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.1e-58 230.7 235 54.9
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 2.4e-58 229.6 173 65.9
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 5.3e-58 228.4 194 60.3
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 7.0e-58 228.0 173 64.2
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 9.1e-58 227.6 236 52.1
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.2e-57 227.3 192 58.9
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.2e-57 227.3 188 60.6
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.2e-57 227.3 173 62.4
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 4.5e-57 225.3 230 53.0
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 5.9e-57 224.9 181 59.7
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 7.7e-57 224.6 211 55.5
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.3e-56 223.8 206 56.3
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 1.3e-56 223.8 179 62.0
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.7e-56 223.4 225 52.4
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.7e-56 223.4 235 51.1
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.2e-56 223.0 207 55.1
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 2.9e-56 222.6 186 58.1
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 2.9e-56 222.6 208 56.2
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 3.8e-56 222.2 198 57.1
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 3.8e-56 222.2 186 57.5
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 5.0e-56 221.9 238 51.7
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 5.0e-56 221.9 238 51.7
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 5.0e-56 221.9 238 51.7
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 6.5e-56 221.5 202 54.5
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 8.5e-56 221.1 181 58.6
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.1e-55 220.7 202 58.9
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.9e-55 219.9 184 58.7
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 1.9e-55 219.9 173 61.3
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 1.9e-55 219.9 173 61.3
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.9e-55 219.9 201 55.2
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 4.2e-55 218.8 184 57.6
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 5.5e-55 218.4 180 58.9
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 5.5e-55 218.4 178 59.0
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 9.4e-55 217.6 178 56.7
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.6e-54 216.9 173 58.4
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.6e-54 216.9 173 58.4
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.6e-54 216.9 185 58.4
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 2.1e-54 216.5 237 50.6
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 2.7e-54 216.1 176 60.8
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 2.7e-54 216.1 176 60.2
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 2.7e-54 216.1 176 60.2
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 3.6e-54 215.7 228 50.0
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 3.6e-54 215.7 198 55.6
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 4.7e-54 215.3 170 60.0
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 4.7e-54 215.3 173 60.7
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 8.0e-54 214.5 179 57.5
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 8.0e-54 214.5 179 58.7
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 8.0e-54 214.5 171 60.2
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.0e-53 214.2 179 58.1
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 1.0e-53 214.2 219 53.4
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 1.8e-53 213.4 182 58.2
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.3e-53 213.0 210 53.3
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 5.2e-53 211.8 173 58.4
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.8e-53 211.1 166 63.9
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 2.6e-52 209.5 176 59.7
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 3.4e-52 209.1 234 49.6
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.4e-52 209.1 179 54.7
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 3.4e-52 209.1 231 48.9
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 3.4e-52 209.1 188 55.9
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 3.4e-52 209.1 173 58.4
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 4.4e-52 208.8 227 49.8
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 5.7e-52 208.4 146 67.8
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 7.5e-52 208.0 201 51.7
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.7e-51 206.8 229 47.2
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.7e-51 206.8 149 67.8
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 1.7e-51 206.8 188 51.1
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 2.2e-51 206.5 179 55.3
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 3.7e-51 205.7 146 66.4
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 8.3e-51 204.5 144 68.1
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 8.3e-51 204.5 219 49.8
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.1e-50 204.1 189 55.0
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 1.1e-50 204.1 179 54.2
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.1e-50 204.1 226 46.9
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 3.1e-50 202.6 232 45.7
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 5.4e-50 201.8 230 46.5
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 5.4e-50 201.8 238 45.8
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 5.4e-50 201.8 220 48.2
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 7.0e-50 201.4 239 48.1
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 7.0e-50 201.4 231 47.2
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.6e-49 200.3 145 64.8
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 2.0e-49 199.9 194 52.1
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 2.7e-49 199.5 144 65.3
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 3.5e-49 199.1 137 69.3
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.5e-49 199.1 238 44.5
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 5.9e-49 198.4 230 45.7
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 5.9e-49 198.4 173 53.2
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.0e-48 197.6 178 52.2
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 3.8e-48 195.7 146 61.0
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 8.5e-48 194.5 157 60.5
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 1.9e-47 193.4 179 53.1
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 7.2e-47 191.4 218 49.5
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.2e-46 190.7 156 59.0
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.2e-46 190.7 164 57.3
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 6.1e-46 188.3 170 57.6
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 8.0e-46 188.0 166 56.0
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.5e-44 183.7 192 49.5
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 5.7e-44 181.8 158 56.3
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.4e-42 176.4 120 66.7
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.1e-42 176.0 177 50.8
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.0e-41 173.3 147 61.2
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 8.6e-40 167.9 191 49.7
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.6e-38 163.7 183 48.6
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.6e-38 162.5 216 43.5
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 6.1e-38 161.8 245 44.1
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.6e-36 156.4 181 44.8
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 4.4e-36 155.6 142 52.1
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 5.7e-36 155.2 143 48.3
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.3e-35 154.1 148 51.4
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 6.4e-35 151.8 122 60.7
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 6.4e-35 151.8 172 49.4
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 4.1e-34 149.1 180 48.3
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 2.5e-31 139.8 244 38.1
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 4.7e-30 135.6 222 37.4
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.7e-27 127.1 148 47.3
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.2e-25 120.9 111 52.3
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.2e-25 120.9 122 54.1
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 2.3e-24 116.7 144 44.4
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.2e-19 100.1 160 40.0
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.4e-18 97.4 145 40.0
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 4.6e-17 92.4 80 55.0
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.9e-16 89.4 139 35.3
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 1.2e-14 84.3 131 33.6
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 2.1e-14 83.6 165 33.3
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.8e-13 80.5 88 48.9
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 3.1e-13 79.7 132 34.8
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 3.8e-11 72.8 233 26.2
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.6e-09 67.4 149 31.5
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.1e-09 67.0 80 50.0
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.7e-08 63.9 145 25.5
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 3.0e-08 63.2 83 41.0
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.9e-08 62.8 118 32.2
MCO15G027 Micromonas commoda HOM05D023681 ORTHO05D024995 9.6e-07 58.2 137 26.3
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 1.6e-06 57.4 109 35.8


User provided reference genes

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