Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 2.9e-157 558.5 286 100.0
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 5.5e-156 554.3 286 99.0
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 2.6e-153 545.4 286 97.2
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 8.8e-130 467.2 280 86.4
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.4e-122 443.4 284 84.9
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 6.8e-122 441.0 291 82.5
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 1.2e-107 393.7 279 73.8
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 1.2e-105 387.1 272 73.9
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 6.4e-104 381.3 268 72.0
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 4.1e-103 378.6 229 80.8
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 5.4e-103 378.3 254 76.0
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 7.1e-103 377.9 287 69.0
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 9.2e-103 377.5 284 69.7
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 9.2e-103 377.5 220 84.5
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 3.5e-102 375.6 220 85.0
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 4.6e-102 375.2 229 82.1
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 6.0e-102 374.8 249 75.1
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 6.0e-102 374.8 224 83.0
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 6.6e-101 371.3 281 69.4
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 6.6e-101 371.3 231 80.5
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 1.1e-100 370.5 228 81.6
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 2.5e-100 369.4 286 67.5
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 2.1e-99 366.3 286 67.5
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 2.1e-99 366.3 223 82.5
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 2.8e-99 365.9 223 82.1
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 2.8e-99 365.9 254 75.2
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.8e-99 365.9 284 69.7
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 3.6e-99 365.5 241 76.3
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 3.6e-99 365.5 286 68.9
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 8.1e-99 364.4 223 82.1
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 1.8e-98 363.2 290 68.3
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 2.3e-98 362.8 284 66.9
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 3.1e-98 362.5 286 68.9
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 2.0e-97 359.8 254 72.4
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 2.6e-97 359.4 218 82.1
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 5.8e-97 358.2 267 69.7
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 5.8e-97 358.2 257 71.2
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 5.8e-97 358.2 297 66.0
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 1.7e-96 356.7 281 67.6
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 3.7e-96 355.5 286 66.8
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 8.4e-96 354.4 222 78.4
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 8.4e-96 354.4 200 86.5
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 8.4e-96 354.4 221 80.1
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 1.1e-95 354.0 222 79.3
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 1.9e-95 353.2 271 69.7
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 2.4e-95 352.8 266 68.8
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 4.1e-95 352.1 257 72.0
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 4.1e-95 352.1 233 76.4
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 5.4e-95 351.7 219 79.0
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 2.7e-94 349.4 286 64.3
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 4.6e-94 348.6 220 79.1
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 4.6e-94 348.6 214 80.4
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 7.8e-94 347.8 219 78.1
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 1.0e-93 347.4 219 78.5
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 1.3e-93 347.1 285 64.6
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 1.3e-93 347.1 218 79.4
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 1.7e-93 346.7 222 78.4
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 1.7e-93 346.7 220 78.6
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 2.3e-93 346.3 231 76.6
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 2.3e-93 346.3 218 78.4
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 2.3e-93 346.3 217 78.8
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 3.0e-93 345.9 222 78.4
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 3.0e-93 345.9 222 78.4
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 8.6e-93 344.4 252 69.4
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 1.1e-92 344.0 222 77.9
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 1.1e-92 344.0 214 79.0
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.1e-92 344.0 214 79.0
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 1.1e-92 344.0 229 77.3
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 2.5e-92 342.8 222 77.5
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 2.5e-92 342.8 226 74.3
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.3e-92 342.4 286 64.7
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 4.3e-92 342.0 244 73.4
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 4.3e-92 342.0 244 73.4
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 7.3e-92 341.3 234 73.5
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 2.8e-91 339.3 221 77.8
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 4.7e-91 338.6 265 67.9
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 6.2e-91 338.2 283 64.0
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 2.4e-90 336.3 282 64.5
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 3.1e-90 335.9 313 57.8
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 1.5e-89 333.6 198 82.3
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 2.4e-87 326.2 203 77.8
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 7.8e-86 321.2 212 74.5
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.3e-85 320.5 183 82.5
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.7e-85 320.1 183 82.0
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.3e-84 315.8 213 75.6
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 2.8e-83 312.8 173 87.3
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 2.8e-83 312.8 317 57.4
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 1.8e-82 310.1 168 89.9
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 1.5e-81 307.0 232 68.5
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 7.6e-81 304.7 189 81.5
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 3.8e-80 302.4 191 79.6
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 1.9e-79 300.1 221 68.3
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 3.2e-79 299.3 215 71.6
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 1.2e-78 297.4 216 69.4
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 6.0e-78 295.0 221 65.6
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 3.0e-77 292.7 210 69.5
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 3.9e-77 292.4 197 72.6
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 6.2e-75 285.0 204 69.6
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 8.1e-75 284.6 198 71.2
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 2.4e-74 283.1 308 55.2
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 4.0e-74 282.3 226 66.4
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 4.9e-72 275.4 217 66.8
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 7.1e-71 271.6 171 80.1
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 2.1e-67 260.0 192 63.0
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 1.4e-63 247.3 242 59.1
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 2.5e-63 246.5 243 58.8
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 6.9e-58 228.4 222 57.2
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 5.3e-50 202.2 109 87.2
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 2.9e-48 196.4 187 60.4
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 2.5e-47 193.4 221 46.2
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 4.6e-46 189.1 222 52.7
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 3.7e-43 179.5 210 44.3
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 5.3e-42 175.6 205 46.8
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.2e-41 174.5 119 73.9
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 1.4e-39 167.5 97 83.5
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 9.4e-39 164.9 97 82.5
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 6.3e-35 152.1 276 40.2
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 1.4e-34 151.0 182 50.0
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 2.2e-32 143.7 184 48.9
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 6.5e-32 142.1 78 87.2
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 1.2e-30 137.9 80 81.2
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 1.8e-29 134.0 96 71.9
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 9.7e-28 128.3 78 78.2
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 2.8e-19 100.1 79 68.4
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 1.4e-18 97.8 140 48.6
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 3.5e-17 93.2 55 78.2
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 4.5e-17 92.8 52 82.7
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 8.5e-16 88.6 50 84.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 1.1e-15 88.2 51 82.4
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 2.3e-13 80.5 48 79.2
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 5.2e-13 79.3 83 49.4
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.3e-11 74.7 47 68.1
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 4.9e-11 72.8 113 39.8
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 8.6e-08 62.0 47 61.7


User provided reference genes

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